Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001022

Physical Location & Seq

Genomic Coordinates Forward (+)

16239496 .. 16240741

Gene Structure 1246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG183200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGAGGAAATACACTGGGATTACTTCGGAGTGTGCCGTCCCTTCAGATAGGGAGAGGAATGCACCTTCGCCTAATTTCCGGGTGCCAGTTACGGCACAAATTGTGATTGGAACTCCTGGTACTATCAGGAGATGGATGTCGATGAAAAAGTTGGGTGTAAGCCGCGTGAAGGTCCTTGTTTTCGATGAGGCTGATCACATGCTGGCTGAGGATGGCTTCCAAGATGATTCCTTAAGGATAAAGAGGGACCCAGAAAAGGTTATCCCTAACTGCCAGGTTCTTCTGTTTTCAGCTACATTTAATGAAAGAGTCACAAATTTTGTCTCAAGGGTTGTGAAACGTGGTAACAATCAACTTTTTGTCAAGAAAGAAGAGCTATCTTTGGAGGGTGTTAAGCAGTACAAGGTGTACTGTCCTGATGAACTGAGCAAGATTGAGGTTATCAAGACCAAAATTTTTGACCTGGGAGAAAAATTAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005730 GO:0005737 GO:0005886 GO:0006139 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008026 GO:0008104 GO:0008150 GO:0008152 GO:0008186 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010467 GO:0010501 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0016973 GO:0017111 GO:0031503 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0033036 GO:0033993 GO:0034613 GO:0034641 GO:0042221 GO:0042623 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070013 GO:0070035 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0090304 GO:0097305 GO:0140098 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

160

Amino Acids

18.22

Weight (kDa)

9.3

Isoelectric Point (pI)

39.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	30 - 105	2.3e-13	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53110
fragaria_vesca	FvH4_6g17230 FvH4_6g17230 FvH4_6g17230 FvH4_6g17280 FvH4_6g17280
malus_domestica	MD12G1102600.v1.1 MD14G1096800.v1.1
prunus_persica	Prupe.3G009100_v2.0.a1 Prupe.7G122600_v2.0.a1
pyrus_communis	pycom03g08760 pycom12g10060 pycom14g09450
rosa_chinensis	RchiOBHm_Chr3g0471311 RchiOBHm_Chr3g0471321 RchiOBHm_Chr3g0471361 RchiOBHm_Chr3g0471391
rosa_laevigata	RLG00000024181 RLG00000024187 RLG00000024188
rosa_multiflora	Rmu_sc0006582.1_g000015 Rmu_sc0006582.1_g000018 Rmu_sc0009082.1_g000003 Rmu_sc0010513.1_g000003 Rmu_sc0015755.1_g000002 Rmu_sc0030425.1_g000001
rosa_roxburghii	Rroxscaffold_6G00409980 Rroxscaffold_6G00410000 Rroxscaffold_6G00410060 Rroxscaffold_6G00410080
rosa_rugosa	Rorug03G0117100 Rorug03G0117100 Rorug03G0117100 Rorug03G0117400 Rorug03G0117500 Rorug03G0117500
rosa_samantha	Rh3AG166500 Rh3AG166600 Rh3AG166700 Rh3AG167100 Rh3BG191900 Rh3BG192000 Rh3BG192100 Rh3BG192400 Rh3BG192500 Rh3BG192800 Rh3CG182200 Rh3CG182300 Rh3CG182400 Rh3CG182700 Rh3CG182800 Rh3CG183200 Rh3DG182700 Rh3DG183100 Rh3DG183200 Rh3DG183700 Rh3DG183800
rosa_wichuraiana	Rw3G015670 Rw3G015680 Rw3G015730 Rw3G015760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	82
AccII	CGCG	1 cut(s)	165
AciI	CCGC	1 cut(s)	163
AcsI	RAATTY	2 cut(s)	316, 453
AcuI	CTGAAG	1 cut(s)	27
AfaI	GTAC	3 cut(s)	121, 401, 410
AfiI	CCNNNNNNNGG	2 cut(s)	169, 256
AflII	CTTAAG	1 cut(s)	232
AjnI	CCWGG	3 cut(s)	115, 273, 462
AluBI	AGCT	2 cut(s)	293, 376
AluI	AGCT	2 cut(s)	293, 376
Alw26I	GTCTC	1 cut(s)	328
ApoI	RAATTY	2 cut(s)	316, 453
AspS9I	GGNCC	2 cut(s)	172, 247
AsuC2I	CCSGG	1 cut(s)	80
AvaII	GGWCC	2 cut(s)	172, 247
BanI	GGYRCC	1 cut(s)	82
BbvCI	CCTCAGC	1 cut(s)	207
BccI	CCATC	2 cut(s)	126, 206
BceAI	ACGGC	2 cut(s)	20, 108
BciT130I	CCWGG	3 cut(s)	117, 275, 464
BclI	TGATCA	1 cut(s)	193
BcnI	CCSGG	1 cut(s)	80
BcoDI	GTCTC	1 cut(s)	328
BfrI	CTTAAG	1 cut(s)	232
BisI	GCNGC	1 cut(s)	163
BlsI	GCNGC	1 cut(s)	164
Bme1390I	CCNGG	4 cut(s)	80, 117, 275, 464
Bme18I	GGWCC	2 cut(s)	172, 247
BmgT120I	GGNCC	2 cut(s)	172, 247
BmiI	GGNNCC	3 cut(s)	84, 248, 249
BmrFI	CCNGG	4 cut(s)	80, 117, 275, 464
BmrI	ACTGGG	1 cut(s)	24
BmuI	ACTGGG	1 cut(s)	24
Bpu10I	CCTNAGC	1 cut(s)	207
BpuEI	CTTGAG	1 cut(s)	310
BpuMI	CCSGG	1 cut(s)	80
BsaJI	CCNNGG	1 cut(s)	463
Bsc4I	CCNNNNNNNGG	2 cut(s)	169, 256
Bse1I	ACTGG	2 cut(s)	19, 86
BseBI	CCWGG	3 cut(s)	117, 275, 464
BseDI	CCNNGG	1 cut(s)	463
BseGI	GGATG	2 cut(s)	141, 217
BseLI	CCNNNNNNNGG	2 cut(s)	169, 256
BseMII	CTCAG	2 cut(s)	198, 416
BseNI	ACTGG	2 cut(s)	19, 86
Bsh1236I	CGCG	1 cut(s)	165
BshNI	GGYRCC	1 cut(s)	82
BsiSI	CCGG	1 cut(s)	79
BslFI	GGGAC	2 cut(s)	23, 260
BslI	CCNNNNNNNGG	2 cut(s)	169, 256
BsmAI	GTCTC	1 cut(s)	328
BsmFI	GGGAC	2 cut(s)	23, 260
BsmI	GAATGC	1 cut(s)	64
Bsp143I	GATC	1 cut(s)	193
BspACI	CCGC	1 cut(s)	163
BspCNI	CTCAG	2 cut(s)	199, 417
BspFNI	CGCG	1 cut(s)	165
BspLI	GGNNCC	3 cut(s)	84, 248, 249
BspQI	GCTCTTC	1 cut(s)	366
BspT107I	GGYRCC	1 cut(s)	82
BspTI	CTTAAG	1 cut(s)	232
BsrI	ACTGG	2 cut(s)	19, 86
BssECI	CCNNGG	1 cut(s)	463
BssMI	GATC	1 cut(s)	193
Bst2UI	CCWGG	3 cut(s)	117, 275, 464
Bst4CI	ACNGT	1 cut(s)	413
Bst6I	CTCTTC	1 cut(s)	366
BstAFI	CTTAAG	1 cut(s)	232
BstC8I	GCNNGC	1 cut(s)	204
BstDEI	CTNAG	2 cut(s)	207, 425
BstF5I	GGATG	2 cut(s)	141, 217
BstFNI	CGCG	1 cut(s)	165
BstKTI	GATC	1 cut(s)	196
BstMAI	GTCTC	1 cut(s)	328
BstMBI	GATC	1 cut(s)	193
BstNI	CCWGG	3 cut(s)	117, 275, 464
BstNSI	RCATGY	1 cut(s)	202
BstSCI	CCNGG	4 cut(s)	78, 115, 273, 462
BstUI	CGCG	1 cut(s)	165
BtsCI	GGATG	2 cut(s)	141, 217
BtsIMutI	CAGTG	1 cut(s)	12
Cac8I	GCNNGC	1 cut(s)	204
Cfr13I	GGNCC	2 cut(s)	172, 247
Csp6I	GTAC	3 cut(s)	120, 400, 409
CviAII	CATG	1 cut(s)	199
CviJI	RGCY	6 cut(s)	162, 191, 206, 216, 293, 376
CviKI_1	RGCY	6 cut(s)	162, 191, 206, 216, 293, 376
CviQI	GTAC	3 cut(s)	120, 400, 409
DdeI	CTNAG	2 cut(s)	207, 425
DpnI	GATC	1 cut(s)	195
DpnII	GATC	1 cut(s)	193
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
Eco47I	GGWCC	2 cut(s)	172, 247
Eco57I	CTGAAG	1 cut(s)	27
EcoO109I	RGGNCCY	2 cut(s)	172, 247
EcoRII	CCWGG	3 cut(s)	115, 273, 462
FaeI	CATG	1 cut(s)	202
FaiI	YATR	1 cut(s)	200
FaqI	GGGAC	2 cut(s)	23, 260
FatI	CATG	1 cut(s)	198
FbaI	TGATCA	1 cut(s)	193
Fnu4HI	GCNGC	1 cut(s)	163
FokI	GGATG	2 cut(s)	148, 224
Fsp4HI	GCNGC	1 cut(s)	163
GluI	GCNGC	1 cut(s)	163
HapII	CCGG	1 cut(s)	79
Hin1II	CATG	1 cut(s)	202
HinfI	GANTC	2 cut(s)	227, 309
HpaII	CCGG	1 cut(s)	79
Hpy166II	GTNNAC	1 cut(s)	409
Hpy188I	TCNGA	2 cut(s)	28, 46
Hpy188III	TCNNGA	4 cut(s)	127, 364, 416, 445
Hpy8I	GTNNAC	1 cut(s)	409
HpyAV	CCTTC	3 cut(s)	51, 75, 163
HpyCH4III	ACNGT	1 cut(s)	413
HpyCH4IV	ACGT	1 cut(s)	340
HpyCH4V	TGCA	1 cut(s)	62
HpyF3I	CTNAG	2 cut(s)	207, 425
HpySE526I	ACGT	1 cut(s)	340
Hsp92II	CATG	1 cut(s)	202
KflI	GGGWCCC	1 cut(s)	247
Ksp22I	TGATCA	1 cut(s)	193
Kzo9I	GATC	1 cut(s)	193
LguI	GCTCTTC	1 cut(s)	366
MaeII	ACGT	1 cut(s)	340
MaeIII	GTNAC	3 cut(s)	88, 310, 344
MalI	GATC	1 cut(s)	195
MboI	GATC	1 cut(s)	193
MboII	GAAGA	2 cut(s)	272, 383
MluCI	AATT	5 cut(s)	73, 99, 316, 453, 473
MlyI	GAGTC	1 cut(s)	318
MnlI	CCTC	6 cut(s)	48, 181, 202, 237, 379, 430
MseI	TTAA	3 cut(s)	233, 300, 393
MspCI	CTTAAG	1 cut(s)	232
MspI	CCGG	1 cut(s)	79
MspR9I	CCNGG	4 cut(s)	80, 117, 275, 464
Mva1269I	GAATGC	1 cut(s)	64
MvaI	CCWGG	3 cut(s)	117, 275, 464
MvnI	CGCG	1 cut(s)	165
NciI	CCSGG	1 cut(s)	80
NdeII	GATC	1 cut(s)	193
NlaIII	CATG	1 cut(s)	202
NlaIV	GGNNCC	3 cut(s)	84, 248, 249
NmuCI	GTSAC	1 cut(s)	310
NspI	RCATGY	1 cut(s)	202
PciSI	GCTCTTC	1 cut(s)	366
PctI	GAATGC	1 cut(s)	64
PfeI	GAWTC	1 cut(s)	227
PkrI	GCNGC	1 cut(s)	164
PleI	GAGTC	1 cut(s)	317
PpsI	GAGTC	1 cut(s)	317
PpuMI	RGGWCCY	2 cut(s)	172, 247
Psp5II	RGGWCCY	2 cut(s)	172, 247
Psp6I	CCWGG	3 cut(s)	115, 273, 462
PspGI	CCWGG	3 cut(s)	115, 273, 462
PspN4I	GGNNCC	3 cut(s)	84, 248, 249
PspPI	GGNCC	2 cut(s)	172, 247
PspPPI	RGGWCCY	2 cut(s)	172, 247
PsrI	GAACNNNNNNTAC	2 cut(s)	103, 135
RsaI	GTAC	3 cut(s)	121, 401, 410
RsaNI	GTAC	3 cut(s)	120, 400, 409
SapI	GCTCTTC	1 cut(s)	366
SaqAI	TTAA	3 cut(s)	233, 300, 393
SatI	GCNGC	1 cut(s)	163
Sau3AI	GATC	1 cut(s)	193
Sau96I	GGNCC	2 cut(s)	172, 247
SchI	GAGTC	1 cut(s)	318
ScrFI	CCNGG	4 cut(s)	80, 117, 275, 464
SinI	GGWCC	2 cut(s)	172, 247
SmlI	CTYRAG	2 cut(s)	232, 325
SmoI	CTYRAG	2 cut(s)	232, 325
Sse9I	AATT	5 cut(s)	73, 99, 316, 453, 473
SsiI	CCGC	1 cut(s)	163
StyD4I	CCNGG	4 cut(s)	78, 115, 273, 462
TaaI	ACNGT	1 cut(s)	413
TaiI	ACGT	1 cut(s)	343
TaqI	TCGA	2 cut(s)	140, 183
TasI	AATT	5 cut(s)	73, 99, 316, 453, 473
TatI	WGTACW	2 cut(s)	399, 408
TauI	GCSGC	1 cut(s)	165
TfiI	GAWTC	1 cut(s)	227
Tru1I	TTAA	3 cut(s)	233, 300, 393
Tru9I	TTAA	3 cut(s)	233, 300, 393
TscAI	CASTG	1 cut(s)	19
TseFI	GTSAC	1 cut(s)	310
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	3 cut(s)	158, 318, 435
TspRI	CASTG	1 cut(s)	19
Vha464I	CTTAAG	1 cut(s)	232
VpaK11BI	GGWCC	2 cut(s)	172, 247
XapI	RAATTY	2 cut(s)	316, 453
XceI	RCATGY	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.