Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0001022

Physical Location & Seq

Genomic Coordinates Reverse (-)

7151662 .. 7152216

Gene Structure 555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g08760.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGCGGCAAACCAAAACAACGACAGATTAGTACCAATGCCGTGTACTGTTGGACTTGTGCTCAACACTGCCGACCTGAACATCAACAGAGAAAACATGTTCCTTGACAATCCCGATGACTCATACATCAATACCGCTACTAGTGACACATTGTACACGTCGGCGATTACGTTCGAGGAGCTGAATTTGTCACCGGAGTTTATACAGGGGTTGTATAGAAAGATGGGCTTCAAGAAGCCCAATAAAATTCAGGCAATCACTTTGCCAATGATTTTGTCCCCTCCGTACAAAGACCTCATTGCTCAGGCGCACAATGGCATGGGGAAAACCACTTGTTTCGGGCTCGGGAAGGGGAGGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005730 GO:0005737 GO:0005886 GO:0006139 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008026 GO:0008104 GO:0008150 GO:0008152 GO:0008186 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010467 GO:0010501 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0016973 GO:0017111 GO:0031503 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0033036 GO:0033993 GO:0034613 GO:0034641 GO:0042221 GO:0042623 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070013 GO:0070035 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0090304 GO:0097305 GO:0140098 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

121

Amino Acids

13.31

Weight (kDa)

5.77

Isoelectric Point (pI)

31.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53110
fragaria_vesca	FvH4_6g17230 FvH4_6g17230 FvH4_6g17230 FvH4_6g17280 FvH4_6g17280
malus_domestica	MD12G1102600.v1.1 MD14G1096800.v1.1
prunus_persica	Prupe.3G009100_v2.0.a1 Prupe.7G122600_v2.0.a1
pyrus_communis	pycom03g08760 pycom12g10060 pycom14g09450
rosa_chinensis	RchiOBHm_Chr3g0471311 RchiOBHm_Chr3g0471321 RchiOBHm_Chr3g0471361 RchiOBHm_Chr3g0471391
rosa_laevigata	RLG00000024181 RLG00000024187 RLG00000024188
rosa_multiflora	Rmu_sc0006582.1_g000015 Rmu_sc0006582.1_g000018 Rmu_sc0009082.1_g000003 Rmu_sc0010513.1_g000003 Rmu_sc0015755.1_g000002 Rmu_sc0030425.1_g000001
rosa_roxburghii	Rroxscaffold_6G00409980 Rroxscaffold_6G00410000 Rroxscaffold_6G00410060 Rroxscaffold_6G00410080
rosa_rugosa	Rorug03G0117100 Rorug03G0117100 Rorug03G0117100 Rorug03G0117400 Rorug03G0117500 Rorug03G0117500
rosa_samantha	Rh3AG166500 Rh3AG166600 Rh3AG166700 Rh3AG167100 Rh3BG191900 Rh3BG192000 Rh3BG192100 Rh3BG192400 Rh3BG192500 Rh3BG192800 Rh3CG182200 Rh3CG182300 Rh3CG182400 Rh3CG182700 Rh3CG182800 Rh3CG183200 Rh3DG182700 Rh3DG183100 Rh3DG183200 Rh3DG183700 Rh3DG183800
rosa_wichuraiana	Rw3G015670 Rw3G015680 Rw3G015730 Rw3G015760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 135
AcsI	RAATTY	2 cut(s)	184, 246
AfaI	GTAC	4 cut(s)	33, 46, 155, 287
AflIII	ACRYGT	2 cut(s)	96, 156
AgsI	TTSAA	1 cut(s)	232
AhlI	ACTAGT	1 cut(s)	140
AjiI	CACGTC	1 cut(s)	159
AluBI	AGCT	1 cut(s)	181
AluI	AGCT	1 cut(s)	181
Alw21I	GWGCWC	1 cut(s)	63
Ama87I	CYCGRG	1 cut(s)	344
ApoI	RAATTY	2 cut(s)	184, 246
AspLEI	GCGC	1 cut(s)	310
AsuHPI	GGTGA	1 cut(s)	183
AvaI	CYCGRG	1 cut(s)	344
BanII	GRGCYC	1 cut(s)	345
Bbv12I	GWGCWC	1 cut(s)	63
BccI	CCATC	1 cut(s)	217
BceAI	ACGGC	1 cut(s)	25
BcuI	ACTAGT	1 cut(s)	140
BfaI	CTAG	1 cut(s)	141
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
BmeT110I	CYCGRG	1 cut(s)	344
BmgBI	CACGTC	1 cut(s)	159
Bpu10I	CCTNAGC	1 cut(s)	303
BsaWI	WCCGGW	1 cut(s)	193
Bse3DI	GCAATG	1 cut(s)	297
BseMI	GCAATG	1 cut(s)	297
BseMII	CTCAG	1 cut(s)	317
BseRI	GAGGAG	1 cut(s)	191
BsiHKAI	GWGCWC	1 cut(s)	63
BsiHKCI	CYCGRG	1 cut(s)	344
BsiSI	CCGG	1 cut(s)	194
BslFI	GGGAC	1 cut(s)	262
BsmFI	GGGAC	1 cut(s)	262
BsoBI	CYCGRG	1 cut(s)	344
Bsp1286I	GDGCHC	2 cut(s)	63, 345
Bsp1407I	TGTACA	1 cut(s)	153
BspACI	CCGC	2 cut(s)	5, 135
BspCNI	CTCAG	1 cut(s)	316
BsrDI	GCAATG	1 cut(s)	297
BsrGI	TGTACA	1 cut(s)	153
Bst4CI	ACNGT	1 cut(s)	49
BstAUI	TGTACA	1 cut(s)	153
BstDEI	CTNAG	1 cut(s)	303
BstHHI	GCGC	1 cut(s)	310
BstNSI	RCATGY	1 cut(s)	100
BtrI	CACGTC	1 cut(s)	159
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	66
CfoI	GCGC	1 cut(s)	310
Csp6I	GTAC	4 cut(s)	32, 45, 154, 286
CviAII	CATG	2 cut(s)	97, 319
CviJI	RGCY	4 cut(s)	181, 228, 238, 343
CviKI_1	RGCY	4 cut(s)	181, 228, 238, 343
CviQI	GTAC	4 cut(s)	32, 45, 154, 286
DdeI	CTNAG	1 cut(s)	303
Eco24I	GRGCYC	1 cut(s)	345
Eco88I	CYCGRG	1 cut(s)	344
EcoT38I	GRGCYC	1 cut(s)	345
FaeI	CATG	2 cut(s)	100, 322
FaiI	YATR	5 cut(s)	98, 124, 203, 216, 320
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	2 cut(s)	96, 318
Fnu4HI	GCNGC	1 cut(s)	6
FriOI	GRGCYC	1 cut(s)	345
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	141
GlaI	GCGC	1 cut(s)	309
GluI	GCNGC	1 cut(s)	6
HapII	CCGG	1 cut(s)	194
HhaI	GCGC	1 cut(s)	310
Hin1II	CATG	2 cut(s)	100, 322
Hin6I	GCGC	1 cut(s)	308
HinP1I	GCGC	1 cut(s)	308
HinfI	GANTC	1 cut(s)	119
HpaII	CCGG	1 cut(s)	194
HphI	GGTGA	1 cut(s)	183
Hpy166II	GTNNAC	2 cut(s)	45, 156
Hpy188III	TCNNGA	3 cut(s)	113, 232, 346
Hpy8I	GTNNAC	2 cut(s)	45, 156
Hpy99I	CGWCG	1 cut(s)	163
HpyAV	CCTTC	1 cut(s)	343
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4IV	ACGT	2 cut(s)	158, 170
HpyF3I	CTNAG	1 cut(s)	303
HpySE526I	ACGT	2 cut(s)	158, 170
Hsp92II	CATG	2 cut(s)	100, 322
HspAI	GCGC	1 cut(s)	308
LmnI	GCTCC	1 cut(s)	178
LpnPI	CCDG	5 cut(s)	89, 191, 207, 236, 290
MaeI	CTAG	1 cut(s)	141
MaeII	ACGT	2 cut(s)	158, 170
MaeIII	GTNAC	2 cut(s)	143, 189
MhlI	GDGCHC	2 cut(s)	63, 345
MluCI	AATT	2 cut(s)	184, 246
MlyI	GAGTC	1 cut(s)	113
MmeI	TCCRAC	1 cut(s)	31
MnlI	CCTC	4 cut(s)	169, 291, 305, 348
MspI	CCGG	1 cut(s)	194
NlaIII	CATG	2 cut(s)	100, 322
NmuCI	GTSAC	2 cut(s)	143, 189
NspI	RCATGY	1 cut(s)	100
PciI	ACATGT	1 cut(s)	96
PcsI	WCGNNNNNNNCGW	1 cut(s)	167
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	113
PscI	ACATGT	1 cut(s)	96
RsaI	GTAC	4 cut(s)	33, 46, 155, 287
RsaNI	GTAC	4 cut(s)	32, 45, 154, 286
SatI	GCNGC	1 cut(s)	6
SchI	GAGTC	1 cut(s)	113
SduI	GDGCHC	2 cut(s)	63, 345
SetI	ASST	5 cut(s)	78, 161, 173, 183, 297
SpeI	ACTAGT	1 cut(s)	140
Sse9I	AATT	2 cut(s)	184, 246
SsiI	CCGC	2 cut(s)	5, 135
SspMI	CTAG	1 cut(s)	141
TaaI	ACNGT	1 cut(s)	49
TaiI	ACGT	2 cut(s)	161, 173
TaqI	TCGA	1 cut(s)	174
TasI	AATT	2 cut(s)	184, 246
TatI	WGTACW	2 cut(s)	44, 153
TauI	GCSGC	1 cut(s)	8
TscAI	CASTG	1 cut(s)	73
TseFI	GTSAC	2 cut(s)	143, 189
Tsp45I	GTSAC	2 cut(s)	143, 189
TspGWI	ACGGA	1 cut(s)	273
TspRI	CASTG	1 cut(s)	73
XapI	RAATTY	2 cut(s)	184, 246
XceI	RCATGY	1 cut(s)	100
XspI	CTAG	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.