Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001022

Physical Location & Seq

Genomic Coordinates Reverse (-)

16044853 .. 16048220

Gene Structure 3368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG182200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

ATGTACTCCACCCTGGCCCATGCCAAACAGTTTCTTGTTCCGCACGTCCACCGGAACGACGCCGTTTCATCCCCTCTGGGATTCGATCTCAACTTTTCCGGCCTGAACATCCACAGAGAGAACATGTTCCTCGACGACCCTGAAGACTCCACTTTCACAATCGTGAGTGACACGCGGTACAGTTCGGTGAGAAGTTTTGAGGATCTGAATCTGTCGCCGGAGGTGATTAGGGCTTTGTATGTGGACATGGGCTACAGGAGGCCCAGTAAAATTCAGGCAATTACTCTGCCGATGATTCTGACGCCTCCTTATAAGGATTTGGTTGCTCAAGCACACAATGGTACTGGGAAAACTACTTGCTTTGGGCTCGGGATGCTGGGCCGAATCGATCCTGGTCTGAAAGCTCCTCAGGCGCTCTGCATTTGTCCCACCAGAGAGCTGGCCATTCAGATATTGGAGGTGCTTCAGAAGATGGGGATGTACACAGGAATAAAAATGGAGTGTGCTGTCCCAAGTGTGACGCCGAGTTCTACATCTGTTCGTGACCGAGCACCAGTGACAGCACATATTGTGATTGGAACTTCTGGTACAGTGCATAAGCTTATGTCATACAAGAAGCTGGGTGTAAGCAAATTGAAGGTTCTTGTTTTTGATGAGGCTGATCACATGCTTGCCGAGGATGGCTTTAGAGATGATTCTTTAAGGATAAAGAAGGAGATAGATAAATTTAGCCCTCACTGCCAGGTGCTTTTGTTTTCTGCTACTTTTAATGAAATGATCACAAAGTTCATACCGAGGGTGATGAAAGATTATAATCAACTATGTTTAAAGAAAGAAGAGCTGTCTTTGGAAGCTGTGAAGCAGTACAAGGTCTACTGCCCTGATGAGCTGAGCAAAATTGATGTGATCAAAAACAAAATATTTGATCTAGGAGATTACATTGGACAGAGAATAATATTTGTAAGGTCGAGAACTAGTGCAAAAATGTTGCATGATGAACTTGTTGGAGATGGTTATTCGGTTACTACCATACATGGCGCCCTCAGTGTTGAAGAGAGAGACAAAATAGTCAAAGAGTTCAAAGATGGTTTAACCAAAGTTCTCATATCAACTGATCTCCTCGCTCGAGGCTTTGATCAACAGCAGGTTAATTGTGTTGTCAATTATGATCTTCCAATCAAGCGTGGAGCTTCTTCAAGCACACGGGATCCTCCAGAGCCTGATTATGAGCTTTACTTACATAGATGTGGCCGGGCAGGTCGTTTTGGGAGCAAGGGATCTGTGTTCAACTTGCTTTGCCTTGATACGGATAAGCTGGTCATGGCAAAAATTGAGCGCTACTATAACATCCAAGTACCAGAGGTTAAGATCAGTGAACGGGCTTTTCAAGGGGCTCTAAGAGCTGCGGGGTTACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005730 GO:0005737 GO:0005886 GO:0006139 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008026 GO:0008104 GO:0008150 GO:0008152 GO:0008186 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010467 GO:0010501 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0016973 GO:0017111 GO:0031503 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0033036 GO:0033993 GO:0034613 GO:0034641 GO:0042221 GO:0042623 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070013 GO:0070035 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0090304 GO:0097305 GO:0140098 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

472

Amino Acids

52.95

Weight (kDa)

8.37

Isoelectric Point (pI)

36.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	90 - 260	4.5e-35	DEAD/DEAH box helicase
ResIII	PF04851	106 - 257	1.9e-07	Type III restriction enzyme, res subunit
Helicase_C	PF00271	310 - 423	3.1e-24	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53110
fragaria_vesca	FvH4_6g17230 FvH4_6g17230 FvH4_6g17230 FvH4_6g17280 FvH4_6g17280
malus_domestica	MD12G1102600.v1.1 MD14G1096800.v1.1
prunus_persica	Prupe.3G009100_v2.0.a1 Prupe.7G122600_v2.0.a1
pyrus_communis	pycom03g08760 pycom12g10060 pycom14g09450
rosa_chinensis	RchiOBHm_Chr3g0471311 RchiOBHm_Chr3g0471321 RchiOBHm_Chr3g0471361 RchiOBHm_Chr3g0471391
rosa_laevigata	RLG00000024181 RLG00000024187 RLG00000024188
rosa_multiflora	Rmu_sc0006582.1_g000015 Rmu_sc0006582.1_g000018 Rmu_sc0009082.1_g000003 Rmu_sc0010513.1_g000003 Rmu_sc0015755.1_g000002 Rmu_sc0030425.1_g000001
rosa_roxburghii	Rroxscaffold_6G00409980 Rroxscaffold_6G00410000 Rroxscaffold_6G00410060 Rroxscaffold_6G00410080
rosa_rugosa	Rorug03G0117100 Rorug03G0117100 Rorug03G0117100 Rorug03G0117400 Rorug03G0117500 Rorug03G0117500
rosa_samantha	Rh3AG166500 Rh3AG166600 Rh3AG166700 Rh3AG167100 Rh3BG191900 Rh3BG192000 Rh3BG192100 Rh3BG192400 Rh3BG192500 Rh3BG192800 Rh3CG182200 Rh3CG182300 Rh3CG182400 Rh3CG182700 Rh3CG182800 Rh3CG183200 Rh3DG182700 Rh3DG183100 Rh3DG183200 Rh3DG183700 Rh3DG183800
rosa_wichuraiana	Rw3G015670 Rw3G015680 Rw3G015730 Rw3G015760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	312, 813
AasI	GACNNNNNNGTC	1 cut(s)	1067
Acc36I	ACCTGC	2 cut(s)	1135, 1247
AccB1I	GGYRCC	1 cut(s)	1037
AccI	GTMKAC	1 cut(s)	873
AccII	CGCG	1 cut(s)	175
AciI	CCGC	3 cut(s)	41, 175, 1406
AclWI	GGATC	5 cut(s)	210, 383, 1202, 1215, 1285
AcoI	YGGCCR	2 cut(s)	441, 1249
AcsI	RAATTY	2 cut(s)	270, 725
AcuI	CTGAAG	2 cut(s)	162, 449
AcyI	GRCGYC	4 cut(s)	60, 302, 521, 1038
AfaI	GTAC	7 cut(s)	5, 179, 343, 482, 589, 866, 1356
AfeI	AGCGCT	1 cut(s)	1337
AfiI	CCNNNNNNNGG	1 cut(s)	1306
AflIII	ACRYGT	1 cut(s)	123
AgsI	TTSAA	6 cut(s)	637, 1052, 1081, 1197, 1288, 1388
AhlI	ACTAGT	1 cut(s)	974
AjiI	CACGTC	1 cut(s)	46
AjnI	CCWGG	3 cut(s)	12, 391, 741
AleI	CACNNNNGTG	1 cut(s)	161
Alw21I	GWGCWC	1 cut(s)	553
Alw26I	GTCTC	1 cut(s)	1053
AlwI	GGATC	5 cut(s)	210, 383, 1202, 1215, 1285
AlwNI	CAGNNNCTG	1 cut(s)	1220
Ama87I	CYCGRG	2 cut(s)	368, 1125
Aor51HI	AGCGCT	1 cut(s)	1337
AoxI	GGCC	6 cut(s)	15, 100, 260, 379, 441, 1249
ApeKI	GCWGC	1 cut(s)	1403
ApoI	RAATTY	2 cut(s)	270, 725
Asp700I	GAANNNNTTC	1 cut(s)	125
AspLEI	GCGC	3 cut(s)	415, 1040, 1338
AspS9I	GGNCC	3 cut(s)	16, 261, 379
AsuC2I	CCSGG	1 cut(s)	1253
AsuHPI	GGTGA	3 cut(s)	199, 235, 811
AvaI	CYCGRG	2 cut(s)	368, 1125
AxyI	CCTNAGG	1 cut(s)	408
BalI	TGGCCA	1 cut(s)	443
BamHI	GGATCC	1 cut(s)	1207
BanI	GGYRCC	1 cut(s)	1037
BanII	GRGCYC	2 cut(s)	369, 1396
BbsI	GAAGAC	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	553
BbvI	GCAGC	1 cut(s)	1390
BccI	CCATC	4 cut(s)	466, 674, 1004, 1079
BceAI	ACGGC	1 cut(s)	47
BciT130I	CCWGG	3 cut(s)	14, 393, 743
BclI	TGATCA	4 cut(s)	661, 777, 906, 1135
BcnI	CCSGG	1 cut(s)	1253
BcoDI	GTCTC	1 cut(s)	1053
BcuI	ACTAGT	1 cut(s)	974
BfaI	CTAG	2 cut(s)	929, 975
BfmI	CTRYAG	1 cut(s)	253
BfoI	RGCGCY	3 cut(s)	416, 1041, 1339
BfuAI	ACCTGC	2 cut(s)	1135, 1247
BisI	GCNGC	1 cut(s)	1404
BlpI	GCTNAGC	1 cut(s)	890
BlsI	GCNGC	1 cut(s)	1405
Bme1390I	CCNGG	4 cut(s)	14, 393, 743, 1253
BmeT110I	CYCGRG	2 cut(s)	368, 1125
BmgBI	CACGTC	1 cut(s)	46
BmgT120I	GGNCC	3 cut(s)	16, 261, 379
BmiI	GGNNCC	2 cut(s)	1039, 1209
BmrFI	CCNGG	4 cut(s)	14, 393, 743, 1253
BmrI	ACTGGG	2 cut(s)	258, 354
BmsI	GCATC	1 cut(s)	363
BmuI	ACTGGG	2 cut(s)	258, 354
BpiI	GAAGAC	1 cut(s)	150
BpmI	CTGGAG	1 cut(s)	1197
Bpu1102I	GCTNAGC	1 cut(s)	890
BpuEI	CTTGAG	1 cut(s)	312
BpuMI	CCSGG	1 cut(s)	1253
Bsa29I	ATCGAT	1 cut(s)	387
BsaBI	GATNNNNATC	2 cut(s)	207, 813
BsaHI	GRCGYC	4 cut(s)	60, 302, 521, 1038
BsaJI	CCNNGG	3 cut(s)	12, 675, 794
BsaWI	WCCGGW	1 cut(s)	51
BsaXI	ACNNNNNCTCC	2 cut(s)	250, 280
Bsc4I	CCNNNNNNNGG	1 cut(s)	1306
Bse1I	ACTGG	3 cut(s)	264, 349, 554
Bse21I	CCTNAGG	1 cut(s)	408
Bse8I	GATNNNNATC	2 cut(s)	207, 813
BseBI	CCWGG	3 cut(s)	14, 393, 743
BseCI	ATCGAT	1 cut(s)	387
BseDI	CCNNGG	3 cut(s)	12, 675, 794
BseGI	GGATG	6 cut(s)	68, 108, 378, 483, 685, 1347
BseJI	GATNNNNATC	2 cut(s)	207, 813
BseLI	CCNNNNNNNGG	1 cut(s)	1306
BseMII	CTCAG	3 cut(s)	422, 881, 1057
BseNI	ACTGG	3 cut(s)	264, 349, 554
BseRI	GAGGAG	2 cut(s)	396, 1109
BseXI	GCAGC	1 cut(s)	1390
BseYI	CCCAGC	2 cut(s)	376, 619
Bsh1236I	CGCG	1 cut(s)	175
BshFI	GGCC	6 cut(s)	17, 102, 262, 381, 443, 1251
BshNI	GGYRCC	1 cut(s)	1037
BshVI	ATCGAT	1 cut(s)	387
BsiHKAI	GWGCWC	1 cut(s)	553
BsiHKCI	CYCGRG	2 cut(s)	368, 1125
BsiSI	CCGG	4 cut(s)	52, 99, 218, 1252
BslFI	GGGAC	2 cut(s)	411, 494
BslI	CCNNNNNNNGG	1 cut(s)	1306
BsmAI	GTCTC	1 cut(s)	1053
BsmFI	GGGAC	2 cut(s)	411, 494
BsnI	GGCC	6 cut(s)	17, 102, 262, 381, 443, 1251
BsoBI	CYCGRG	2 cut(s)	368, 1125
Bsp1286I	GDGCHC	3 cut(s)	369, 553, 1396
Bsp1407I	TGTACA	1 cut(s)	480
Bsp1720I	GCTNAGC	1 cut(s)	890
BspACI	CCGC	3 cut(s)	41, 175, 1406
BspANI	GGCC	6 cut(s)	17, 102, 262, 381, 443, 1251
BspCNI	CTCAG	3 cut(s)	421, 882, 1056
BspDI	ATCGAT	1 cut(s)	387
BspFNI	CGCG	1 cut(s)	175
BspLI	GGNNCC	2 cut(s)	1039, 1209
BspMI	ACCTGC	2 cut(s)	1135, 1247
BspPI	GGATC	5 cut(s)	210, 383, 1202, 1215, 1285
BspQI	GCTCTTC	1 cut(s)	831
BspT107I	GGYRCC	1 cut(s)	1037
BsrGI	TGTACA	1 cut(s)	480
BsrI	ACTGG	3 cut(s)	264, 349, 554
BssECI	CCNNGG	3 cut(s)	12, 675, 794
BssNI	GRCGYC	4 cut(s)	60, 302, 521, 1038
Bst2UI	CCWGG	3 cut(s)	14, 393, 743
Bst4CI	ACNGT	4 cut(s)	30, 182, 592, 1416
Bst6I	CTCTTC	2 cut(s)	831, 1047
BstACI	GRCGYC	4 cut(s)	60, 302, 521, 1038
BstAUI	TGTACA	1 cut(s)	480
BstC8I	GCNNGC	2 cut(s)	441, 672
BstDEI	CTNAG	4 cut(s)	408, 890, 1043, 1397
BstF5I	GGATG	6 cut(s)	68, 108, 378, 483, 685, 1347
BstFNI	CGCG	1 cut(s)	175
BstH2I	RGCGCY	3 cut(s)	416, 1041, 1339
BstHHI	GCGC	3 cut(s)	415, 1040, 1338
BstMAI	GTCTC	1 cut(s)	1053
BstMWI	GCNNNNNNNGC	4 cut(s)	373, 410, 738, 1400
BstNI	CCWGG	3 cut(s)	14, 393, 743
BstNSI	RCATGY	2 cut(s)	127, 670
BstSCI	CCNGG	4 cut(s)	12, 391, 741, 1251
BstSFI	CTRYAG	1 cut(s)	253
BstUI	CGCG	1 cut(s)	175
BstV1I	GCAGC	1 cut(s)	1390
BstV2I	GAAGAC	1 cut(s)	150
BstX2I	RGATCY	3 cut(s)	202, 1207, 1277
BstXI	CCANNNNNNTGG	1 cut(s)	439
BstYI	RGATCY	3 cut(s)	202, 1207, 1277
Bsu15I	ATCGAT	1 cut(s)	387
Bsu36I	CCTNAGG	1 cut(s)	408
BsuRI	GGCC	6 cut(s)	17, 102, 262, 381, 443, 1251
BsuTUI	ATCGAT	1 cut(s)	387
BtrI	CACGTC	1 cut(s)	46
BtsCI	GGATG	6 cut(s)	68, 108, 378, 483, 685, 1347
BtsI	GCAGTG	1 cut(s)	736
BtsIMutI	CAGTG	5 cut(s)	561, 597, 736, 1051, 1378
BveI	ACCTGC	2 cut(s)	1135, 1247
Cac8I	GCNNGC	2 cut(s)	441, 672
CaiI	CAGNNNCTG	1 cut(s)	1220
CfoI	GCGC	3 cut(s)	415, 1040, 1338
Cfr13I	GGNCC	3 cut(s)	16, 261, 379
ClaI	ATCGAT	1 cut(s)	387
CseI	GACGC	3 cut(s)	68, 310, 529
Csp6I	GTAC	7 cut(s)	4, 178, 342, 481, 588, 865, 1355
CviAII	CATG	7 cut(s)	20, 124, 247, 667, 992, 1034, 1321
CviQI	GTAC	7 cut(s)	4, 178, 342, 481, 588, 865, 1355
DdeI	CTNAG	4 cut(s)	408, 890, 1043, 1397
DinI	GGCGCC	1 cut(s)	1039
DraI	TTTAAA	1 cut(s)	828
DrdI	GACNNNNNNGTC	1 cut(s)	1067
DseDI	GACNNNNNNGTC	1 cut(s)	1067
EaeI	YGGCCR	2 cut(s)	441, 1249
Eam1104I	CTCTTC	2 cut(s)	831, 1047
EarI	CTCTTC	2 cut(s)	831, 1047
Eco24I	GRGCYC	2 cut(s)	369, 1396
Eco47III	AGCGCT	1 cut(s)	1337
Eco57I	CTGAAG	2 cut(s)	162, 449
Eco81I	CCTNAGG	1 cut(s)	408
Eco88I	CYCGRG	2 cut(s)	368, 1125
EcoRII	CCWGG	3 cut(s)	12, 391, 741
EcoT38I	GRGCYC	2 cut(s)	369, 1396
EgeI	GGCGCC	1 cut(s)	1039
EheI	GGCGCC	1 cut(s)	1039
FaeI	CATG	7 cut(s)	23, 127, 250, 670, 995, 1037, 1324
FaqI	GGGAC	2 cut(s)	411, 494
FatI	CATG	7 cut(s)	19, 123, 246, 666, 991, 1033, 1320
FauI	CCCGC	1 cut(s)	1399
FbaI	TGATCA	4 cut(s)	661, 777, 906, 1135
FblI	GTMKAC	1 cut(s)	873
Fnu4HI	GCNGC	1 cut(s)	1404
FokI	GGATG	6 cut(s)	55, 95, 385, 490, 692, 1334
FriOI	GRGCYC	2 cut(s)	369, 1396
Fsp4HI	GCNGC	1 cut(s)	1404
FspBI	CTAG	2 cut(s)	929, 975
GlaI	GCGC	3 cut(s)	414, 1039, 1337
GluI	GCNGC	1 cut(s)	1404
GsaI	CCCAGC	2 cut(s)	380, 623
GsuI	CTGGAG	1 cut(s)	1197
HaeII	RGCGCY	3 cut(s)	416, 1041, 1339
HaeIII	GGCC	6 cut(s)	17, 102, 262, 381, 443, 1251
HapII	CCGG	4 cut(s)	52, 99, 218, 1252
HgaI	GACGC	3 cut(s)	68, 310, 529
HhaI	GCGC	3 cut(s)	415, 1040, 1338
Hin1I	GRCGYC	4 cut(s)	60, 302, 521, 1038
Hin1II	CATG	7 cut(s)	23, 127, 250, 670, 995, 1037, 1324
Hin6I	GCGC	3 cut(s)	413, 1038, 1336
HinP1I	GCGC	3 cut(s)	413, 1038, 1336
HindIII	AAGCTT	1 cut(s)	599
HinfI	GANTC	6 cut(s)	81, 146, 208, 295, 384, 695
HpaII	CCGG	4 cut(s)	52, 99, 218, 1252
HphI	GGTGA	3 cut(s)	199, 235, 811
Hpy166II	GTNNAC	5 cut(s)	49, 244, 483, 874, 1376
Hpy188I	TCNGA	5 cut(s)	207, 300, 399, 450, 468
Hpy188III	TCNNGA	5 cut(s)	163, 370, 542, 969, 1214
Hpy8I	GTNNAC	5 cut(s)	49, 244, 483, 874, 1376
Hpy99I	CGWCG	2 cut(s)	62, 137
HpyAV	CCTTC	2 cut(s)	631, 706
HpyCH4III	ACNGT	4 cut(s)	30, 182, 592, 1416
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	4 cut(s)	420, 595, 980, 991
HpyF10VI	GCNNNNNNNGC	4 cut(s)	373, 410, 738, 1400
HpyF3I	CTNAG	4 cut(s)	408, 890, 1043, 1397
HpySE526I	ACGT	1 cut(s)	45
Hsp92I	GRCGYC	4 cut(s)	60, 302, 521, 1038
Hsp92II	CATG	7 cut(s)	23, 127, 250, 670, 995, 1037, 1324
HspAI	GCGC	3 cut(s)	413, 1038, 1336
KasI	GGCGCC	1 cut(s)	1037
Ksp22I	TGATCA	4 cut(s)	661, 777, 906, 1135
LguI	GCTCTTC	1 cut(s)	831
LmnI	GCTCC	3 cut(s)	409, 1187, 1269
Lsp1109I	GCAGC	1 cut(s)	1390
LweI	GCATC	1 cut(s)	363
MaeI	CTAG	2 cut(s)	929, 975
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	6 cut(s)	167, 517, 542, 556, 1021, 1410
MboII	GAAGA	6 cut(s)	155, 481, 848, 1064, 1163, 1185
MflI	RGATCY	3 cut(s)	202, 1207, 1277
MhlI	GDGCHC	3 cut(s)	369, 553, 1396
MlsI	TGGCCA	1 cut(s)	443
MluCI	AATT	8 cut(s)	270, 279, 632, 725, 897, 1150, 1162, 1329
MluNI	TGGCCA	1 cut(s)	443
Mly113I	GGCGCC	1 cut(s)	1038
MlyI	GAGTC	1 cut(s)	140
MmeI	TCCRAC	1 cut(s)	985
Mox20I	TGGCCA	1 cut(s)	443
MroXI	GAANNNNTTC	1 cut(s)	125
MscI	TGGCCA	1 cut(s)	443
MseI	TTAA	6 cut(s)	701, 768, 827, 1091, 1149, 1365
MslI	CAYNNNNRTG	2 cut(s)	161, 1245
Msp20I	TGGCCA	1 cut(s)	443
MspI	CCGG	4 cut(s)	52, 99, 218, 1252
MspR9I	CCNGG	4 cut(s)	14, 393, 743, 1253
MvaI	CCWGG	3 cut(s)	14, 393, 743
MvnI	CGCG	1 cut(s)	175
MwoI	GCNNNNNNNGC	4 cut(s)	373, 410, 738, 1400
NarI	GGCGCC	1 cut(s)	1038
NciI	CCSGG	1 cut(s)	1253
NlaIII	CATG	7 cut(s)	23, 127, 250, 670, 995, 1037, 1324
NlaIV	GGNNCC	2 cut(s)	1039, 1209
NmeAIII	GCCGAG	2 cut(s)	549, 700
NmuCI	GTSAC	4 cut(s)	167, 517, 542, 556
NspI	RCATGY	2 cut(s)	127, 670
OliI	CACNNNNGTG	1 cut(s)	161
PaeR7I	CTCGAG	1 cut(s)	1125
PciI	ACATGT	1 cut(s)	123
PciSI	GCTCTTC	1 cut(s)	831
PdmI	GAANNNNTTC	1 cut(s)	125
PfeI	GAWTC	5 cut(s)	81, 208, 295, 384, 695
PkrI	GCNGC	1 cut(s)	1405
PleI	GAGTC	1 cut(s)	140
PluTI	GGCGCC	1 cut(s)	1041
PpsI	GAGTC	1 cut(s)	140
PscI	ACATGT	1 cut(s)	123
PsiI	TTATAA	2 cut(s)	312, 813
Psp6I	CCWGG	3 cut(s)	12, 391, 741
PspFI	CCCAGC	2 cut(s)	376, 619
PspGI	CCWGG	3 cut(s)	12, 391, 741
PspN4I	GGNNCC	2 cut(s)	1039, 1209
PspPI	GGNCC	3 cut(s)	16, 261, 379
PspXI	VCTCGAGB	1 cut(s)	1125
PsrI	GAACNNNNNNTAC	2 cut(s)	571, 603
PstNI	CAGNNNCTG	1 cut(s)	1220
PsuI	RGATCY	3 cut(s)	202, 1207, 1277
RsaI	GTAC	7 cut(s)	5, 179, 343, 482, 589, 866, 1356
RsaNI	GTAC	7 cut(s)	4, 178, 342, 481, 588, 865, 1355
RseI	CAYNNNNRTG	2 cut(s)	161, 1245
SapI	GCTCTTC	1 cut(s)	831
SaqAI	TTAA	6 cut(s)	701, 768, 827, 1091, 1149, 1365
SatI	GCNGC	1 cut(s)	1404
Sau96I	GGNCC	3 cut(s)	16, 261, 379
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	4 cut(s)	14, 393, 743, 1253
SduI	GDGCHC	3 cut(s)	369, 553, 1396
SfaNI	GCATC	1 cut(s)	363
SfcI	CTRYAG	1 cut(s)	253
SfoI	GGCGCC	1 cut(s)	1039
Sfr274I	CTCGAG	1 cut(s)	1125
SlaI	CTCGAG	1 cut(s)	1125
SmiMI	CAYNNNNRTG	2 cut(s)	161, 1245
SmlI	CTYRAG	2 cut(s)	327, 1125
SmoI	CTYRAG	2 cut(s)	327, 1125
SpeI	ACTAGT	1 cut(s)	974
Sse9I	AATT	8 cut(s)	270, 279, 632, 725, 897, 1150, 1162, 1329
SsiI	CCGC	3 cut(s)	41, 175, 1406
SspDI	GGCGCC	1 cut(s)	1037
SspI	AATATT	2 cut(s)	921, 957
SspMI	CTAG	2 cut(s)	929, 975
StyD4I	CCNGG	4 cut(s)	12, 391, 741, 1251
TaaI	ACNGT	4 cut(s)	30, 182, 592, 1416
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	5 cut(s)	84, 132, 387, 968, 1126
TaqII	GACCGA	1 cut(s)	561
TasI	AATT	8 cut(s)	270, 279, 632, 725, 897, 1150, 1162, 1329
TatI	WGTACW	3 cut(s)	3, 480, 864
TfiI	GAWTC	5 cut(s)	81, 208, 295, 384, 695
Tru1I	TTAA	6 cut(s)	701, 768, 827, 1091, 1149, 1365
Tru9I	TTAA	6 cut(s)	701, 768, 827, 1091, 1149, 1365
TscAI	CASTG	5 cut(s)	561, 597, 743, 1051, 1378
TseFI	GTSAC	4 cut(s)	167, 517, 542, 556
TseI	GCWGC	1 cut(s)	1403
Tsp45I	GTSAC	4 cut(s)	167, 517, 542, 556
TspDTI	ATGAA	5 cut(s)	57, 778, 786, 818, 1011
TspGWI	ACGGA	1 cut(s)	1322
TspRI	CASTG	5 cut(s)	561, 597, 743, 1051, 1378
XapI	RAATTY	2 cut(s)	270, 725
XceI	RCATGY	2 cut(s)	127, 670
XcmI	CCANNNNNNNNNTGG	2 cut(s)	436, 451
XhoI	CTCGAG	1 cut(s)	1125
XmiI	GTMKAC	1 cut(s)	873
XmnI	GAANNNNTTC	1 cut(s)	125
XspI	CTAG	2 cut(s)	929, 975

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.