Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001022

Physical Location & Seq

Genomic Coordinates Reverse (-)

15467976 .. 15487481

Gene Structure 19506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG167100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1536 bp

ATGGCTGAGACTGACACTGCCGCCGCCTCCACAACGACGCCACCAGTCGACACTTCTTCCTCCACCGACTCTGTCACCAGTGCACCTCCTCCGCCCCCGGCGAAGCCCGTGATTAAATGCTGGGCCGACGAAGAGGATGATCCGCCGGAGGAGCCGGAGAAAACCGAAGCTCCTCCGTCTACTTCAGACCAGCCGGAGCTCGAAGTCGCCGCATTGAAGATCACTGAGAACAAGTTCCTCGACGATCCTGAAGACTCTAATATCAGCGCCGTTACGGCCGGCGACACGCCGTACACGTCGGCGAGTACTTTCGAGGACCTGAATCTACCGGAGGCGGTGCTCAAGGGTTTGTATGTAGAGATGGGCTTCAAGAAGCCCAGTAAAATCCAGGCGATCACTTTGCCTATGATTTTGACTCCCCCGTACAAAGATCTGGTTGCTCAGGCCCATAATGGTTCCGGGAAGACGACCTGTTTCGTGCTTGGTATGCTCGGCCGTGTTGATCCCAATGTGAAAGCTCCTCAGGCTCTCTGCATTTGTCCCACCAGAGAGTTGGCTATTCAGAATATGGAGGTTCTTCAGAAAATGGGGAAATACACTGGGGTTACTTCGGAGTGTGCCGTCCCTGCAGATAGGGAGAGGAATGCACCTTCGCCTAGCTTCCGGGCGCCAGTTACGGCACAAATTGTGATTGGAACTCCTGGTACTATCAAGAGATGGATGTCGACGAAAAAGCTGGGTGTAAGCCGCGTGAAGGTCCTTGTTTTCGATGAGGCTGATCACATGCTGGCTGAGGATGGCTTCCAAGATGATTCCTTAAGGATAAAGAGGGACACAGAAAAAGTTAGCCCTAACTGCCAGGTTCTTCTGTTTTCAGCTACATTTAATGAAAGAGTCACAAATTTTGTCTCAAGGGTTGTGAAACGTGGTAACAATCAACTTTTTGTCAAGAAAGAAGAGCTATCTTTGGAGGGTGTTAAGCAGTACAAGGTGTACTGTCCTGATGAACTGAGCAAGATTGAGGTTATCAAGACCAAAATTTTTGACCTGGGAGAAAAATTAGGACAGAGGATTATATTTGTTCGGACAAAAAATAGCGCAAGAATGTTGTATCAACAACTTTCTGATGATGGTTATGCTGTTACTGCTATTCAAGGTGCCCTCAACACCGAGGACAGAGACAAAATAATCAAAGAGTTTAAAGATGGTTTAACCCAAGTTCTCATATCAACTGATGTACTTGCCAGAGGCTTTGACCAACAGCAGGTTAACTGTGTTGTTAATTATGATCTTCCGGTCAAATTTTCACCTGATCCCCGGTCACAACCTGTAGAACCTGATTATGAGGTGTACCTGCATAGAATTGGGAGGGCAGGGCGTTTTGGTCGCAAGGGAGCTGTGTTTAACGTGATTTGCGATGATAATGACGAGTTGGTCATGTCAAAAATTGGGCAGTATTTTGACATCAAAGTACCAGTGGTTAAAAATACTGATGAGGCTTTTGAAGGGGCTCTTAAAACAGCTGGCTTACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005730 GO:0005737 GO:0005886 GO:0006139 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008026 GO:0008104 GO:0008150 GO:0008152 GO:0008186 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010467 GO:0010501 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0016973 GO:0017111 GO:0031503 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0033036 GO:0033993 GO:0034613 GO:0034641 GO:0042221 GO:0042623 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070013 GO:0070035 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0090304 GO:0097305 GO:0140098 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

511

Amino Acids

56.26

Weight (kDa)

5.11

Isoelectric Point (pI)

38.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	128 - 300	1.7e-35	DEAD/DEAH box helicase
ResIII	PF04851	144 - 296	2e-07	Type III restriction enzyme, res subunit
Helicase_C	PF00271	344 - 462	4.7e-25	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53110
fragaria_vesca	FvH4_6g17230 FvH4_6g17230 FvH4_6g17230 FvH4_6g17280 FvH4_6g17280
malus_domestica	MD12G1102600.v1.1 MD14G1096800.v1.1
prunus_persica	Prupe.3G009100_v2.0.a1 Prupe.7G122600_v2.0.a1
pyrus_communis	pycom03g08760 pycom12g10060 pycom14g09450
rosa_chinensis	RchiOBHm_Chr3g0471311 RchiOBHm_Chr3g0471321 RchiOBHm_Chr3g0471361 RchiOBHm_Chr3g0471391
rosa_laevigata	RLG00000024181 RLG00000024187 RLG00000024188
rosa_multiflora	Rmu_sc0006582.1_g000015 Rmu_sc0006582.1_g000018 Rmu_sc0009082.1_g000003 Rmu_sc0010513.1_g000003 Rmu_sc0015755.1_g000002 Rmu_sc0030425.1_g000001
rosa_roxburghii	Rroxscaffold_6G00409980 Rroxscaffold_6G00410000 Rroxscaffold_6G00410060 Rroxscaffold_6G00410080
rosa_rugosa	Rorug03G0117100 Rorug03G0117100 Rorug03G0117100 Rorug03G0117400 Rorug03G0117500 Rorug03G0117500
rosa_samantha	Rh3AG166500 Rh3AG166600 Rh3AG166700 Rh3AG167100 Rh3BG191900 Rh3BG192000 Rh3BG192100 Rh3BG192400 Rh3BG192500 Rh3BG192800 Rh3CG182200 Rh3CG182300 Rh3CG182400 Rh3CG182700 Rh3CG182800 Rh3CG183200 Rh3DG182700 Rh3DG183100 Rh3DG183200 Rh3DG183700 Rh3DG183800
rosa_wichuraiana	Rw3G015670 Rw3G015680 Rw3G015730 Rw3G015760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1433
Acc36I	ACCTGC	2 cut(s)	1255, 1362
AccB1I	GGYRCC	2 cut(s)	667, 1157
AccI	GTMKAC	3 cut(s)	48, 179, 725
AccII	CGCG	1 cut(s)	750
AciI	CCGC	7 cut(s)	21, 24, 92, 143, 210, 335, 748
AclWI	GGATC	4 cut(s)	134, 239, 497, 1307
AcoI	YGGCCR	2 cut(s)	276, 493
AcsI	RAATTY	3 cut(s)	901, 1038, 1301
AcuI	CTGAAG	3 cut(s)	168, 270, 563
AcyI	GRCGYC	2 cut(s)	38, 668
AfaI	GTAC	9 cut(s)	293, 307, 425, 706, 986, 995, 1239, 1352, 1473
AfiI	CCNNNNNNNGG	2 cut(s)	754, 1264
AflII	CTTAAG	1 cut(s)	817
AflIII	ACRYGT	1 cut(s)	294
AgsI	TTSAA	4 cut(s)	217, 370, 1154, 1505
AjiI	CACGTC	1 cut(s)	297
AjnI	CCWGG	4 cut(s)	387, 700, 858, 1047
AluBI	AGCT	9 cut(s)	170, 199, 518, 660, 736, 878, 961, 1397, 1523
AluI	AGCT	9 cut(s)	170, 199, 518, 660, 736, 878, 961, 1397, 1523
Alw21I	GWGCWC	3 cut(s)	85, 201, 342
Alw26I	GTCTC	3 cut(s)	2, 913, 1173
Alw44I	GTGCAC	1 cut(s)	81
AlwI	GGATC	4 cut(s)	134, 239, 497, 1307
AoxI	GGCC	4 cut(s)	123, 276, 444, 493
ApaLI	GTGCAC	1 cut(s)	81
ApoI	RAATTY	3 cut(s)	901, 1038, 1301
Asp700I	GAANNNNTTC	1 cut(s)	233
AspLEI	GCGC	3 cut(s)	269, 670, 1100
AspS9I	GGNCC	4 cut(s)	123, 316, 445, 757
AsuC2I	CCSGG	4 cut(s)	98, 460, 665, 1318
AsuHPI	GGTGA	2 cut(s)	67, 1299
AvaII	GGWCC	2 cut(s)	316, 757
AxyI	CCTNAGG	1 cut(s)	522
BaeGI	GKGCMC	2 cut(s)	85, 1162
BanI	GGYRCC	2 cut(s)	667, 1157
BanII	GRGCYC	2 cut(s)	201, 1513
BbsI	GAAGAC	2 cut(s)	258, 470
Bbv12I	GWGCWC	3 cut(s)	85, 201, 342
BbvCI	CCTCAGC	1 cut(s)	792
BccI	CCATC	5 cut(s)	355, 711, 791, 1124, 1199
BceAI	ACGGC	6 cut(s)	254, 274, 291, 480, 605, 693
BcgI	CGANNNNNNTGC	2 cut(s)	382, 416
BciT130I	CCWGG	4 cut(s)	389, 702, 860, 1049
BclI	TGATCA	1 cut(s)	778
BcnI	CCSGG	4 cut(s)	98, 460, 665, 1318
BcoDI	GTCTC	3 cut(s)	2, 913, 1173
BfaI	CTAG	1 cut(s)	657
BfmI	CTRYAG	2 cut(s)	627, 1329
BfoI	RGCGCY	2 cut(s)	270, 671
BfrI	CTTAAG	1 cut(s)	817
BfuAI	ACCTGC	2 cut(s)	1255, 1362
BglI	GCCNNNNNGGC	1 cut(s)	275
BglII	AGATCT	1 cut(s)	430
BisI	GCNGC	4 cut(s)	21, 24, 210, 748
BlsI	GCNGC	4 cut(s)	22, 25, 211, 749
BmcAI	AGTACT	1 cut(s)	307
Bme1390I	CCNGG	8 cut(s)	98, 389, 460, 665, 702, 860, 1049, 1318
Bme18I	GGWCC	2 cut(s)	316, 757
BmgBI	CACGTC	1 cut(s)	297
BmgT120I	GGNCC	4 cut(s)	123, 316, 445, 757
BmiI	GGNNCC	4 cut(s)	153, 457, 669, 1159
BmrFI	CCNGG	8 cut(s)	98, 389, 460, 665, 702, 860, 1049, 1318
BmrI	ACTGGG	2 cut(s)	372, 609
BmuI	ACTGGG	2 cut(s)	372, 609
BpiI	GAAGAC	2 cut(s)	258, 470
Bpu10I	CCTNAGC	2 cut(s)	441, 792
BpuEI	CTTGAG	2 cut(s)	326, 895
BpuMI	CCSGG	4 cut(s)	98, 460, 665, 1318
BsaHI	GRCGYC	2 cut(s)	38, 668
BsaJI	CCNNGG	4 cut(s)	96, 1048, 1170, 1316
BsaWI	WCCGGW	2 cut(s)	328, 1294
BsaXI	ACNNNNNCTCC	2 cut(s)	154, 184
Bsc4I	CCNNNNNNNGG	2 cut(s)	754, 1264
Bse118I	RCCGGY	1 cut(s)	278
Bse1I	ACTGG	6 cut(s)	44, 78, 378, 604, 671, 1475
Bse21I	CCTNAGG	1 cut(s)	522
BseBI	CCWGG	4 cut(s)	389, 702, 860, 1049
BseDI	CCNNGG	4 cut(s)	96, 1048, 1170, 1316
BseGI	GGATG	3 cut(s)	142, 726, 802
BseLI	CCNNNNNNNGG	2 cut(s)	754, 1264
BseMII	CTCAG	5 cut(s)	216, 455, 536, 783, 1001
BseNI	ACTGG	6 cut(s)	44, 78, 378, 604, 671, 1475
BseRI	GAGGAG	4 cut(s)	78, 162, 164, 510
BseSI	GKGCMC	2 cut(s)	85, 1162
BseX3I	CGGCCG	2 cut(s)	276, 493
BseYI	CCCAGC	2 cut(s)	120, 736
Bsh1236I	CGCG	1 cut(s)	750
Bsh1285I	CGRYCG	2 cut(s)	279, 496
BshFI	GGCC	4 cut(s)	125, 278, 446, 495
BshNI	GGYRCC	2 cut(s)	667, 1157
BsiEI	CGRYCG	2 cut(s)	279, 496
BsiHKAI	GWGCWC	3 cut(s)	85, 201, 342
BslFI	GGGAC	3 cut(s)	525, 608, 845
BslI	CCNNNNNNNGG	2 cut(s)	754, 1264
BsmAI	GTCTC	3 cut(s)	2, 913, 1173
BsmFI	GGGAC	3 cut(s)	525, 608, 845
BsmI	GAATGC	1 cut(s)	649
BsnI	GGCC	4 cut(s)	125, 278, 446, 495
Bsp1286I	GDGCHC	5 cut(s)	85, 201, 342, 1162, 1513
Bsp143I	GATC	9 cut(s)	139, 219, 244, 393, 430, 502, 778, 1288, 1312
BspACI	CCGC	7 cut(s)	21, 24, 92, 143, 210, 335, 748
BspANI	GGCC	4 cut(s)	125, 278, 446, 495
BspCNI	CTCAG	5 cut(s)	217, 454, 535, 784, 1002
BspFNI	CGCG	1 cut(s)	750
BspLI	GGNNCC	4 cut(s)	153, 457, 669, 1159
BspMAI	CTGCAG	1 cut(s)	631
BspMI	ACCTGC	2 cut(s)	1255, 1362
BspPI	GGATC	4 cut(s)	134, 239, 497, 1307
BspQI	GCTCTTC	1 cut(s)	951
BspT107I	GGYRCC	2 cut(s)	667, 1157
BspTI	CTTAAG	1 cut(s)	817
BsrFI	RCCGGY	1 cut(s)	278
BsrI	ACTGG	6 cut(s)	44, 78, 378, 604, 671, 1475
BssAI	RCCGGY	1 cut(s)	278
BssECI	CCNNGG	4 cut(s)	96, 1048, 1170, 1316
BssMI	GATC	9 cut(s)	139, 219, 244, 393, 430, 502, 778, 1288, 1312
BssNI	GRCGYC	2 cut(s)	38, 668
Bst2UI	CCWGG	4 cut(s)	389, 702, 860, 1049
Bst4CI	ACNGT	3 cut(s)	998, 1274, 1533
Bst6I	CTCTTC	2 cut(s)	126, 951
BstACI	GRCGYC	2 cut(s)	38, 668
BstAFI	CTTAAG	1 cut(s)	817
BstC8I	GCNNGC	3 cut(s)	280, 789, 1525
BstDEI	CTNAG	6 cut(s)	6, 225, 441, 522, 792, 1010
BstF5I	GGATG	3 cut(s)	142, 726, 802
BstFNI	CGCG	1 cut(s)	750
BstH2I	RGCGCY	2 cut(s)	270, 671
BstHHI	GCGC	3 cut(s)	269, 670, 1100
BstKTI	GATC	9 cut(s)	142, 222, 247, 396, 433, 505, 781, 1291, 1315
BstMAI	GTCTC	3 cut(s)	2, 913, 1173
BstMBI	GATC	9 cut(s)	139, 219, 244, 393, 430, 502, 778, 1288, 1312
BstMCI	CGRYCG	2 cut(s)	279, 496
BstMWI	GCNNNNNNNGC	7 cut(s)	151, 275, 487, 524, 626, 855, 1145
BstNI	CCWGG	4 cut(s)	389, 702, 860, 1049
BstNSI	RCATGY	1 cut(s)	787
BstSCI	CCNGG	8 cut(s)	96, 387, 458, 663, 700, 858, 1047, 1316
BstSFI	CTRYAG	2 cut(s)	627, 1329
BstSLI	GKGCMC	2 cut(s)	85, 1162
BstUI	CGCG	1 cut(s)	750
BstV2I	GAAGAC	2 cut(s)	258, 470
BstX2I	RGATCY	1 cut(s)	430
BstXI	CCANNNNNNTGG	1 cut(s)	553
BstYI	RGATCY	1 cut(s)	430
BstZI	CGGCCG	2 cut(s)	276, 493
Bsu36I	CCTNAGG	1 cut(s)	522
BsuRI	GGCC	4 cut(s)	125, 278, 446, 495
BtgZI	GCGATG	1 cut(s)	1431
BtrI	CACGTC	1 cut(s)	297
BtsCI	GGATG	3 cut(s)	142, 726, 802
BtsI	GCAGTG	1 cut(s)	15
BtsIMutI	CAGTG	5 cut(s)	15, 85, 222, 597, 1482
BveI	ACCTGC	2 cut(s)	1255, 1362
Cac8I	GCNNGC	3 cut(s)	280, 789, 1525
CfoI	GCGC	3 cut(s)	269, 670, 1100
Cfr10I	RCCGGY	1 cut(s)	278
Cfr13I	GGNCC	4 cut(s)	123, 316, 445, 757
CseI	GACGC	1 cut(s)	46
Csp6I	GTAC	9 cut(s)	292, 306, 424, 705, 985, 994, 1238, 1351, 1472
CviAII	CATG	2 cut(s)	784, 1438
CviQI	GTAC	9 cut(s)	292, 306, 424, 705, 985, 994, 1238, 1351, 1472
DdeI	CTNAG	6 cut(s)	6, 225, 441, 522, 792, 1010
DinI	GGCGCC	1 cut(s)	669
DpnI	GATC	9 cut(s)	141, 221, 246, 395, 432, 504, 780, 1290, 1314
DpnII	GATC	9 cut(s)	139, 219, 244, 393, 430, 502, 778, 1288, 1312
DraI	TTTAAA	1 cut(s)	1201
DrdI	GACNNNNNNGTC	1 cut(s)	1433
DseDI	GACNNNNNNGTC	1 cut(s)	1433
EaeI	YGGCCR	2 cut(s)	276, 493
EagI	CGGCCG	2 cut(s)	276, 493
Eam1104I	CTCTTC	2 cut(s)	126, 951
EarI	CTCTTC	2 cut(s)	126, 951
EciI	GGCGGA	2 cut(s)	81, 132
Ecl136II	GAGCTC	1 cut(s)	199
EclXI	CGGCCG	2 cut(s)	276, 493
Eco24I	GRGCYC	2 cut(s)	201, 1513
Eco47I	GGWCC	2 cut(s)	316, 757
Eco52I	CGGCCG	2 cut(s)	276, 493
Eco53kI	GAGCTC	1 cut(s)	199
Eco57I	CTGAAG	3 cut(s)	168, 270, 563
Eco81I	CCTNAGG	1 cut(s)	522
EcoICRI	GAGCTC	1 cut(s)	199
EcoO109I	RGGNCCY	2 cut(s)	316, 757
EcoRII	CCWGG	4 cut(s)	387, 700, 858, 1047
EcoT38I	GRGCYC	2 cut(s)	201, 1513
EgeI	GGCGCC	1 cut(s)	669
EheI	GGCGCC	1 cut(s)	669
FaeI	CATG	2 cut(s)	787, 1441
FalI	AAGNNNNNCTT	2 cut(s)	1497, 1529
FaqI	GGGAC	3 cut(s)	525, 608, 845
FatI	CATG	2 cut(s)	783, 1437
FbaI	TGATCA	1 cut(s)	778
FblI	GTMKAC	3 cut(s)	48, 179, 725
Fnu4HI	GCNGC	4 cut(s)	21, 24, 210, 748
FokI	GGATG	3 cut(s)	149, 733, 809
FriOI	GRGCYC	2 cut(s)	201, 1513
Fsp4HI	GCNGC	4 cut(s)	21, 24, 210, 748
FspBI	CTAG	1 cut(s)	657
GlaI	GCGC	3 cut(s)	268, 669, 1099
GluI	GCNGC	4 cut(s)	21, 24, 210, 748
GsaI	CCCAGC	2 cut(s)	124, 740
HaeII	RGCGCY	2 cut(s)	270, 671
HaeIII	GGCC	4 cut(s)	125, 278, 446, 495
HgaI	GACGC	1 cut(s)	46
HhaI	GCGC	3 cut(s)	269, 670, 1100
Hin1I	GRCGYC	2 cut(s)	38, 668
Hin1II	CATG	2 cut(s)	787, 1441
Hin6I	GCGC	3 cut(s)	267, 668, 1098
HinP1I	GCGC	3 cut(s)	267, 668, 1098
HincII	GTYRAC	3 cut(s)	49, 726, 1270
HindII	GTYRAC	3 cut(s)	49, 726, 1270
HinfI	GANTC	6 cut(s)	68, 254, 322, 415, 812, 894
HpaI	GTTAAC	1 cut(s)	1270
HphI	GGTGA	2 cut(s)	67, 1299
Hpy166II	GTNNAC	8 cut(s)	49, 83, 180, 294, 726, 994, 1270, 1351
Hpy188I	TCNGA	6 cut(s)	187, 564, 582, 613, 1086, 1126
Hpy188III	TCNNGA	6 cut(s)	248, 370, 712, 949, 1001, 1030
Hpy8I	GTNNAC	8 cut(s)	49, 83, 180, 294, 726, 994, 1270, 1351
Hpy99I	CGWCG	5 cut(s)	40, 131, 245, 301, 730
HpyAV	CCTTC	3 cut(s)	660, 748, 1499
HpyCH4III	ACNGT	3 cut(s)	998, 1274, 1533
HpyCH4IV	ACGT	3 cut(s)	296, 925, 1407
HpyCH4V	TGCA	5 cut(s)	83, 534, 629, 647, 1357
HpyF10VI	GCNNNNNNNGC	7 cut(s)	151, 275, 487, 524, 626, 855, 1145
HpyF3I	CTNAG	6 cut(s)	6, 225, 441, 522, 792, 1010
HpySE526I	ACGT	3 cut(s)	296, 925, 1407
Hsp92I	GRCGYC	2 cut(s)	38, 668
Hsp92II	CATG	2 cut(s)	787, 1441
HspAI	GCGC	3 cut(s)	267, 668, 1098
KasI	GGCGCC	1 cut(s)	667
KroI	GCCGGC	1 cut(s)	278
KroNI	GCCGGC	1 cut(s)	280
Ksp22I	TGATCA	1 cut(s)	778
KspAI	GTTAAC	1 cut(s)	1270
Kzo9I	GATC	9 cut(s)	139, 219, 244, 393, 430, 502, 778, 1288, 1312
LguI	GCTCTTC	1 cut(s)	951
LmnI	GCTCC	5 cut(s)	151, 175, 196, 523, 1394
MaeI	CTAG	1 cut(s)	657
MaeII	ACGT	3 cut(s)	296, 925, 1407
MaeIII	GTNAC	8 cut(s)	73, 271, 604, 673, 895, 929, 1141, 1320
MalI	GATC	9 cut(s)	141, 221, 246, 395, 432, 504, 780, 1290, 1314
MboI	GATC	9 cut(s)	139, 219, 244, 393, 430, 502, 778, 1288, 1312
MboII	GAAGA	9 cut(s)	48, 143, 229, 263, 475, 569, 857, 968, 1283
MflI	RGATCY	1 cut(s)	430
MhlI	GDGCHC	5 cut(s)	85, 201, 342, 1162, 1513
MluCI	AATT	8 cut(s)	684, 901, 1038, 1058, 1282, 1301, 1362, 1446
Mly113I	GGCGCC	1 cut(s)	668
MlyI	GAGTC	4 cut(s)	62, 248, 409, 903
MroNI	GCCGGC	1 cut(s)	278
MroXI	GAANNNNTTC	1 cut(s)	233
MspA1I	CMGCKG	1 cut(s)	1523
MspCI	CTTAAG	1 cut(s)	817
MspR9I	CCNGG	8 cut(s)	98, 389, 460, 665, 702, 860, 1049, 1318
Mva1269I	GAATGC	1 cut(s)	649
MvaI	CCWGG	4 cut(s)	389, 702, 860, 1049
MvnI	CGCG	1 cut(s)	750
MwoI	GCNNNNNNNGC	7 cut(s)	151, 275, 487, 524, 626, 855, 1145
NaeI	GCCGGC	1 cut(s)	280
NarI	GGCGCC	1 cut(s)	668
NciI	CCSGG	4 cut(s)	98, 460, 665, 1318
NdeII	GATC	9 cut(s)	139, 219, 244, 393, 430, 502, 778, 1288, 1312
NgoMIV	GCCGGC	1 cut(s)	278
NlaIII	CATG	2 cut(s)	787, 1441
NlaIV	GGNNCC	4 cut(s)	153, 457, 669, 1159
NmeAIII	GCCGAG	1 cut(s)	471
NmuCI	GTSAC	3 cut(s)	73, 895, 1320
NspI	RCATGY	1 cut(s)	787
PciSI	GCTCTTC	1 cut(s)	951
PcsI	WCGNNNNNNNCGW	2 cut(s)	293, 1413
PctI	GAATGC	1 cut(s)	649
PdiI	GCCGGC	1 cut(s)	280
PdmI	GAANNNNTTC	1 cut(s)	233
PfeI	GAWTC	2 cut(s)	322, 812
PflFI	GACNNNGTC	1 cut(s)	71
PfoI	TCCNGGA	1 cut(s)	458
PkrI	GCNGC	4 cut(s)	22, 25, 211, 749
PleI	GAGTC	4 cut(s)	62, 248, 409, 902
PluTI	GGCGCC	1 cut(s)	671
PpsI	GAGTC	4 cut(s)	62, 248, 409, 902
PpuMI	RGGWCCY	2 cut(s)	316, 757
Psp124BI	GAGCTC	1 cut(s)	201
Psp5II	RGGWCCY	2 cut(s)	316, 757
Psp6I	CCWGG	4 cut(s)	387, 700, 858, 1047
PspFI	CCCAGC	2 cut(s)	120, 736
PspGI	CCWGG	4 cut(s)	387, 700, 858, 1047
PspN4I	GGNNCC	4 cut(s)	153, 457, 669, 1159
PspPI	GGNCC	4 cut(s)	123, 316, 445, 757
PspPPI	RGGWCCY	2 cut(s)	316, 757
PsrI	GAACNNNNNNTAC	2 cut(s)	688, 720
PstI	CTGCAG	1 cut(s)	631
PsuI	RGATCY	1 cut(s)	430
PsyI	GACNNNGTC	1 cut(s)	71
PvuII	CAGCTG	1 cut(s)	1523
RsaI	GTAC	9 cut(s)	293, 307, 425, 706, 986, 995, 1239, 1352, 1473
RsaNI	GTAC	9 cut(s)	292, 306, 424, 705, 985, 994, 1238, 1351, 1472
SacI	GAGCTC	1 cut(s)	201
SalI	GTCGAC	2 cut(s)	47, 724
SapI	GCTCTTC	1 cut(s)	951
SatI	GCNGC	4 cut(s)	21, 24, 210, 748
Sau3AI	GATC	9 cut(s)	139, 219, 244, 393, 430, 502, 778, 1288, 1312
Sau96I	GGNCC	4 cut(s)	123, 316, 445, 757
ScaI	AGTACT	1 cut(s)	307
SchI	GAGTC	4 cut(s)	62, 248, 409, 903
ScrFI	CCNGG	8 cut(s)	98, 389, 460, 665, 702, 860, 1049, 1318
SduI	GDGCHC	5 cut(s)	85, 201, 342, 1162, 1513
SfcI	CTRYAG	2 cut(s)	627, 1329
SfoI	GGCGCC	1 cut(s)	669
SinI	GGWCC	2 cut(s)	316, 757
SmlI	CTYRAG	3 cut(s)	341, 817, 910
SmoI	CTYRAG	3 cut(s)	341, 817, 910
Sse9I	AATT	8 cut(s)	684, 901, 1038, 1058, 1282, 1301, 1362, 1446
SsiI	CCGC	7 cut(s)	21, 24, 92, 143, 210, 335, 748
SspDI	GGCGCC	1 cut(s)	667
SspMI	CTAG	1 cut(s)	657
SstI	GAGCTC	1 cut(s)	201
StyD4I	CCNGG	8 cut(s)	96, 387, 458, 663, 700, 858, 1047, 1316
TaaI	ACNGT	3 cut(s)	998, 1274, 1533
TaiI	ACGT	3 cut(s)	299, 928, 1410
TaqI	TCGA	6 cut(s)	48, 201, 240, 312, 725, 768
TasI	AATT	8 cut(s)	684, 901, 1038, 1058, 1282, 1301, 1362, 1446
TatI	WGTACW	4 cut(s)	305, 984, 993, 1237
TauI	GCSGC	4 cut(s)	23, 26, 212, 750
TfiI	GAWTC	2 cut(s)	322, 812
TscAI	CASTG	5 cut(s)	22, 85, 229, 604, 1482
TseFI	GTSAC	3 cut(s)	73, 895, 1320
Tsp45I	GTSAC	3 cut(s)	73, 895, 1320
TspDTI	ATGAA	2 cut(s)	903, 1020
TspGWI	ACGGA	1 cut(s)	165
TspRI	CASTG	5 cut(s)	22, 85, 229, 604, 1482
Tth111I	GACNNNGTC	1 cut(s)	71
Vha464I	CTTAAG	1 cut(s)	817
VneI	GTGCAC	1 cut(s)	81
VpaK11BI	GGWCC	2 cut(s)	316, 757
XapI	RAATTY	3 cut(s)	901, 1038, 1301
XceI	RCATGY	1 cut(s)	787
XcmI	CCANNNNNNNNNTGG	1 cut(s)	550
XmiI	GTMKAC	3 cut(s)	48, 179, 725
XmnI	GAANNNNTTC	1 cut(s)	233
XspI	CTAG	1 cut(s)	657
ZrmI	AGTACT	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.