Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001022

Physical Location & Seq

Genomic Coordinates Forward (+)

32465446 .. 32469402

Gene Structure 3957 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00409980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGCCGAGACTGACACTGGCGCCGCAGCCACAACGACGCCACCAGTCGACACTTCTTCCTCCACCGACTCTGTCACCAGTGCACCTCCGCAGCCGCCGAAGGCCGTGATTAAACGCTGGGCCGACGAAGAGGATGATCCGCCGGAGGAGCCGGAGAAAACCGAAGCTCCTCCGTCTACTTCAGACCAGCCGGAGCTCGAAGTCGCCGCATTGAAGATCACTGAGAACAAGTTCCTCGAGGATCCTGAAGACTCTCATATCAGCGCCGTTACGGCCGGCGACACGCCGTACACGTCGGCGAGTACTTTTGAGGACCTGAATCTACCGGAGGCGGTGCTCAAGGGTTTGTATGTAGAGATGGGCTTCAAGAAGCCCAGTAAAATCCAGGCGATCACTTTGCCTATGATTTTGACTCCTCCGCACAAAGATCTGGTTGCTCAGGCCCATAATGGTTCCGGGAAGACGACCTGTTTCGTGCTTGGTATGCTCGGCCGTGTTGATCCCAATGTGAAAGCTCCTCAGGCTCTCTGCATTTGTCCCACCAGAGAGTTGGCTATTCAGAATATGGAGGTTCTTCAGAAAATGGGGAAATACACTGGGGTTACTTCGGAGTGTGCCGTCCCTTCAGATAGGGAGAGGAATGCACCTTCGCCTAACTTCCGGGCGCCAGTTATGGCACAAATTGTGATTGGAACTCCTGGTACTATCAAGAGATGGATGTCGATGAAAAAGCTGGGTGTAAGCCGCGTGAAGGTCCTTGTTTTCGATGAGGCTGATCACATGCTGGCTGAGGATGGCTTCCAAGATGATTCCTTAAGGATAAAGAGGGACACAGAAAAAGTTAGCCCTAACTGCCAGGTTCTTCTGTTTTCAGCTACATTTAATGAAAGAGTCACAAATTTTGTCTCAAGGGTTGTGAAACGTGGTAACAATCAACTTTTTGTCAAGAAAGAAGAGCTATCTTTGGAGGGTGTTAAGCAGTACAAGGTGTACTGTCCTGATGAACTGAGCAAGATTGAGGTTATAAAGACCAAAATTTTTGACCTGGGAGAAAAATTAGGACAGAGGATTATATTTGTTCGGACAAAAATAGTGCAAGAATGTTGTATCAACAACTTTCTGATGATGGTTATGCTGTTACTGCTATTCAAGGTGCCCTCAACACCGAGGACAGGGACAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005730 GO:0005737 GO:0005886 GO:0006139 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008026 GO:0008104 GO:0008150 GO:0008152 GO:0008186 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010467 GO:0010501 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0016973 GO:0017111 GO:0031503 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0033036 GO:0033993 GO:0034613 GO:0034641 GO:0042221 GO:0042623 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070013 GO:0070035 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0090304 GO:0097305 GO:0140098 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

394

Amino Acids

43.46

Weight (kDa)

5.8

Isoelectric Point (pI)

42.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	127 - 299	8e-36	DEAD/DEAH box helicase
ResIII	PF04851	140 - 295	2.5e-07	Type III restriction enzyme, res subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53110
fragaria_vesca	FvH4_6g17230 FvH4_6g17230 FvH4_6g17230 FvH4_6g17280 FvH4_6g17280
malus_domestica	MD12G1102600.v1.1 MD14G1096800.v1.1
prunus_persica	Prupe.3G009100_v2.0.a1 Prupe.7G122600_v2.0.a1
pyrus_communis	pycom03g08760 pycom12g10060 pycom14g09450
rosa_chinensis	RchiOBHm_Chr3g0471311 RchiOBHm_Chr3g0471321 RchiOBHm_Chr3g0471361 RchiOBHm_Chr3g0471391
rosa_laevigata	RLG00000024181 RLG00000024187 RLG00000024188
rosa_multiflora	Rmu_sc0006582.1_g000015 Rmu_sc0006582.1_g000018 Rmu_sc0009082.1_g000003 Rmu_sc0010513.1_g000003 Rmu_sc0015755.1_g000002 Rmu_sc0030425.1_g000001
rosa_roxburghii	Rroxscaffold_6G00409980 Rroxscaffold_6G00410000 Rroxscaffold_6G00410060 Rroxscaffold_6G00410080
rosa_rugosa	Rorug03G0117100 Rorug03G0117100 Rorug03G0117100 Rorug03G0117400 Rorug03G0117500 Rorug03G0117500
rosa_samantha	Rh3AG166500 Rh3AG166600 Rh3AG166700 Rh3AG167100 Rh3BG191900 Rh3BG192000 Rh3BG192100 Rh3BG192400 Rh3BG192500 Rh3BG192800 Rh3CG182200 Rh3CG182300 Rh3CG182400 Rh3CG182700 Rh3CG182800 Rh3CG183200 Rh3DG182700 Rh3DG183100 Rh3DG183200 Rh3DG183700 Rh3DG183800
rosa_wichuraiana	Rw3G015670 Rw3G015680 Rw3G015730 Rw3G015760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1025
AbsI	CCTCGAGG	1 cut(s)	236
AccB1I	GGYRCC	3 cut(s)	20, 664, 1153
AccI	GTMKAC	2 cut(s)	48, 176
AccII	CGCG	1 cut(s)	747
AciI	CCGC	8 cut(s)	24, 89, 95, 140, 207, 332, 419, 745
AclWI	GGATC	4 cut(s)	131, 236, 249, 494
AcoI	YGGCCR	3 cut(s)	3, 273, 490
AcsI	RAATTY	2 cut(s)	898, 1035
AcuI	CTGAAG	4 cut(s)	165, 267, 560, 609
AcyI	GRCGYC	3 cut(s)	21, 38, 665
AfaI	GTAC	5 cut(s)	290, 304, 703, 983, 992
AfiI	CCNNNNNNNGG	2 cut(s)	751, 1172
AflII	CTTAAG	1 cut(s)	814
AflIII	ACRYGT	1 cut(s)	291
AgsI	TTSAA	3 cut(s)	214, 367, 1150
AjiI	CACGTC	1 cut(s)	294
AjnI	CCWGG	4 cut(s)	384, 697, 855, 1044
AluBI	AGCT	6 cut(s)	167, 196, 515, 733, 875, 958
AluI	AGCT	6 cut(s)	167, 196, 515, 733, 875, 958
Alw21I	GWGCWC	3 cut(s)	85, 198, 339
Alw26I	GTCTC	2 cut(s)	2, 910
Alw44I	GTGCAC	1 cut(s)	81
AlwI	GGATC	4 cut(s)	131, 236, 249, 494
Ama87I	CYCGRG	1 cut(s)	236
AoxI	GGCC	6 cut(s)	3, 102, 120, 273, 441, 490
ApaLI	GTGCAC	1 cut(s)	81
ApeKI	GCWGC	2 cut(s)	26, 91
ApoI	RAATTY	2 cut(s)	898, 1035
Asp700I	GAANNNNTTC	1 cut(s)	230
AspLEI	GCGC	3 cut(s)	23, 266, 667
AspS9I	GGNCC	4 cut(s)	120, 313, 442, 754
AsuC2I	CCSGG	2 cut(s)	457, 662
AsuHPI	GGTGA	1 cut(s)	67
AvaI	CYCGRG	1 cut(s)	236
AvaII	GGWCC	2 cut(s)	313, 754
AxyI	CCTNAGG	1 cut(s)	519
BaeGI	GKGCMC	2 cut(s)	85, 1158
BamHI	GGATCC	1 cut(s)	241
BanI	GGYRCC	3 cut(s)	20, 664, 1153
BanII	GRGCYC	1 cut(s)	198
BbsI	GAAGAC	2 cut(s)	255, 467
Bbv12I	GWGCWC	3 cut(s)	85, 198, 339
BbvCI	CCTCAGC	1 cut(s)	789
BbvI	GCAGC	2 cut(s)	38, 103
BccI	CCATC	4 cut(s)	352, 708, 788, 1120
BceAI	ACGGC	6 cut(s)	89, 251, 271, 288, 477, 602
BcgI	CGANNNNNNTGC	2 cut(s)	379, 413
BciT130I	CCWGG	4 cut(s)	386, 699, 857, 1046
BclI	TGATCA	1 cut(s)	775
BcnI	CCSGG	2 cut(s)	457, 662
BcoDI	GTCTC	2 cut(s)	2, 910
BfoI	RGCGCY	3 cut(s)	24, 267, 668
BfrI	CTTAAG	1 cut(s)	814
BglI	GCCNNNNNGGC	1 cut(s)	272
BglII	AGATCT	1 cut(s)	427
BisI	GCNGC	6 cut(s)	24, 27, 92, 95, 207, 745
BlsI	GCNGC	6 cut(s)	25, 28, 93, 96, 208, 746
BmcAI	AGTACT	1 cut(s)	304
Bme1390I	CCNGG	6 cut(s)	386, 457, 662, 699, 857, 1046
Bme18I	GGWCC	2 cut(s)	313, 754
BmeT110I	CYCGRG	1 cut(s)	236
BmgBI	CACGTC	1 cut(s)	294
BmgT120I	GGNCC	4 cut(s)	120, 313, 442, 754
BmiI	GGNNCC	6 cut(s)	22, 150, 243, 454, 666, 1155
BmrFI	CCNGG	6 cut(s)	386, 457, 662, 699, 857, 1046
BmrI	ACTGGG	2 cut(s)	369, 606
BmuI	ACTGGG	2 cut(s)	369, 606
BpiI	GAAGAC	2 cut(s)	255, 467
Bpu10I	CCTNAGC	2 cut(s)	438, 789
BpuEI	CTTGAG	2 cut(s)	323, 892
BpuMI	CCSGG	2 cut(s)	457, 662
BsaHI	GRCGYC	3 cut(s)	21, 38, 665
BsaJI	CCNNGG	2 cut(s)	1045, 1166
BsaWI	WCCGGW	1 cut(s)	325
BsaXI	ACNNNNNCTCC	2 cut(s)	151, 181
Bsc4I	CCNNNNNNNGG	2 cut(s)	751, 1172
Bse118I	RCCGGY	1 cut(s)	275
Bse1I	ACTGG	6 cut(s)	22, 44, 78, 375, 601, 668
Bse21I	CCTNAGG	1 cut(s)	519
BseBI	CCWGG	4 cut(s)	386, 699, 857, 1046
BseDI	CCNNGG	2 cut(s)	1045, 1166
BseGI	GGATG	3 cut(s)	139, 723, 799
BseLI	CCNNNNNNNGG	2 cut(s)	751, 1172
BseMII	CTCAG	5 cut(s)	213, 452, 533, 780, 998
BseNI	ACTGG	6 cut(s)	22, 44, 78, 375, 601, 668
BseRI	GAGGAG	4 cut(s)	159, 161, 405, 507
BseSI	GKGCMC	2 cut(s)	85, 1158
BseX3I	CGGCCG	2 cut(s)	273, 490
BseXI	GCAGC	2 cut(s)	38, 103
BseYI	CCCAGC	2 cut(s)	117, 733
Bsh1236I	CGCG	1 cut(s)	747
Bsh1285I	CGRYCG	2 cut(s)	276, 493
BshFI	GGCC	6 cut(s)	5, 104, 122, 275, 443, 492
BshNI	GGYRCC	3 cut(s)	20, 664, 1153
BsiEI	CGRYCG	2 cut(s)	276, 493
BsiHKAI	GWGCWC	3 cut(s)	85, 198, 339
BsiHKCI	CYCGRG	1 cut(s)	236
BsiSI	CCGG	7 cut(s)	143, 152, 191, 276, 326, 456, 661
BslFI	GGGAC	3 cut(s)	522, 605, 842
BslI	CCNNNNNNNGG	2 cut(s)	751, 1172
BsmAI	GTCTC	2 cut(s)	2, 910
BsmFI	GGGAC	3 cut(s)	522, 605, 842
BsmI	GAATGC	1 cut(s)	646
BsnI	GGCC	6 cut(s)	5, 104, 122, 275, 443, 492
BsoBI	CYCGRG	1 cut(s)	236
Bsp1286I	GDGCHC	4 cut(s)	85, 198, 339, 1158
Bsp143I	GATC	7 cut(s)	136, 216, 241, 390, 427, 499, 775
BspACI	CCGC	8 cut(s)	24, 89, 95, 140, 207, 332, 419, 745
BspANI	GGCC	6 cut(s)	5, 104, 122, 275, 443, 492
BspCNI	CTCAG	5 cut(s)	214, 451, 532, 781, 999
BspFNI	CGCG	1 cut(s)	747
BspLI	GGNNCC	6 cut(s)	22, 150, 243, 454, 666, 1155
BspPI	GGATC	4 cut(s)	131, 236, 249, 494
BspQI	GCTCTTC	1 cut(s)	948
BspT107I	GGYRCC	3 cut(s)	20, 664, 1153
BspTI	CTTAAG	1 cut(s)	814
BsrFI	RCCGGY	1 cut(s)	275
BsrI	ACTGG	6 cut(s)	22, 44, 78, 375, 601, 668
BssAI	RCCGGY	1 cut(s)	275
BssECI	CCNNGG	2 cut(s)	1045, 1166
BssMI	GATC	7 cut(s)	136, 216, 241, 390, 427, 499, 775
BssNI	GRCGYC	3 cut(s)	21, 38, 665
Bst2UI	CCWGG	4 cut(s)	386, 699, 857, 1046
Bst4CI	ACNGT	1 cut(s)	995
Bst6I	CTCTTC	2 cut(s)	123, 948
BstACI	GRCGYC	3 cut(s)	21, 38, 665
BstAFI	CTTAAG	1 cut(s)	814
BstC8I	GCNNGC	2 cut(s)	277, 786
BstDEI	CTNAG	5 cut(s)	222, 438, 519, 789, 1007
BstF5I	GGATG	3 cut(s)	139, 723, 799
BstFNI	CGCG	1 cut(s)	747
BstH2I	RGCGCY	3 cut(s)	24, 267, 668
BstHHI	GCGC	3 cut(s)	23, 266, 667
BstKTI	GATC	7 cut(s)	139, 219, 244, 393, 430, 502, 778
BstMAI	GTCTC	2 cut(s)	2, 910
BstMBI	GATC	7 cut(s)	136, 216, 241, 390, 427, 499, 775
BstMCI	CGRYCG	2 cut(s)	276, 493
BstMWI	GCNNNNNNNGC	6 cut(s)	148, 272, 484, 521, 852, 1141
BstNI	CCWGG	4 cut(s)	386, 699, 857, 1046
BstNSI	RCATGY	1 cut(s)	784
BstSCI	CCNGG	6 cut(s)	384, 455, 660, 697, 855, 1044
BstSLI	GKGCMC	2 cut(s)	85, 1158
BstUI	CGCG	1 cut(s)	747
BstV1I	GCAGC	2 cut(s)	38, 103
BstV2I	GAAGAC	2 cut(s)	255, 467
BstX2I	RGATCY	2 cut(s)	241, 427
BstXI	CCANNNNNNTGG	1 cut(s)	550
BstYI	RGATCY	2 cut(s)	241, 427
BstZI	CGGCCG	2 cut(s)	273, 490
Bsu36I	CCTNAGG	1 cut(s)	519
BsuRI	GGCC	6 cut(s)	5, 104, 122, 275, 443, 492
BtrI	CACGTC	1 cut(s)	294
BtsCI	GGATG	3 cut(s)	139, 723, 799
BtsIMutI	CAGTG	4 cut(s)	15, 85, 219, 594
Cac8I	GCNNGC	2 cut(s)	277, 786
CfoI	GCGC	3 cut(s)	23, 266, 667
Cfr10I	RCCGGY	1 cut(s)	275
Cfr13I	GGNCC	4 cut(s)	120, 313, 442, 754
CseI	GACGC	1 cut(s)	46
Csp6I	GTAC	5 cut(s)	289, 303, 702, 982, 991
CviAII	CATG	1 cut(s)	781
CviQI	GTAC	5 cut(s)	289, 303, 702, 982, 991
DdeI	CTNAG	5 cut(s)	222, 438, 519, 789, 1007
DinI	GGCGCC	2 cut(s)	22, 666
DpnI	GATC	7 cut(s)	138, 218, 243, 392, 429, 501, 777
DpnII	GATC	7 cut(s)	136, 216, 241, 390, 427, 499, 775
EaeI	YGGCCR	3 cut(s)	3, 273, 490
EagI	CGGCCG	2 cut(s)	273, 490
Eam1104I	CTCTTC	2 cut(s)	123, 948
EarI	CTCTTC	2 cut(s)	123, 948
EciI	GGCGGA	1 cut(s)	129
Ecl136II	GAGCTC	1 cut(s)	196
EclXI	CGGCCG	2 cut(s)	273, 490
Eco24I	GRGCYC	1 cut(s)	198
Eco47I	GGWCC	2 cut(s)	313, 754
Eco52I	CGGCCG	2 cut(s)	273, 490
Eco53kI	GAGCTC	1 cut(s)	196
Eco57I	CTGAAG	4 cut(s)	165, 267, 560, 609
Eco81I	CCTNAGG	1 cut(s)	519
Eco88I	CYCGRG	1 cut(s)	236
EcoICRI	GAGCTC	1 cut(s)	196
EcoO109I	RGGNCCY	2 cut(s)	313, 754
EcoRII	CCWGG	4 cut(s)	384, 697, 855, 1044
EcoT38I	GRGCYC	1 cut(s)	198
EgeI	GGCGCC	2 cut(s)	22, 666
EheI	GGCGCC	2 cut(s)	22, 666
FaeI	CATG	1 cut(s)	784
FaqI	GGGAC	3 cut(s)	522, 605, 842
FatI	CATG	1 cut(s)	780
FbaI	TGATCA	1 cut(s)	775
FblI	GTMKAC	2 cut(s)	48, 176
Fnu4HI	GCNGC	6 cut(s)	24, 27, 92, 95, 207, 745
FokI	GGATG	3 cut(s)	146, 730, 806
FriOI	GRGCYC	1 cut(s)	198
Fsp4HI	GCNGC	6 cut(s)	24, 27, 92, 95, 207, 745
GlaI	GCGC	3 cut(s)	22, 265, 666
GluI	GCNGC	6 cut(s)	24, 27, 92, 95, 207, 745
GsaI	CCCAGC	2 cut(s)	121, 737
HaeII	RGCGCY	3 cut(s)	24, 267, 668
HaeIII	GGCC	6 cut(s)	5, 104, 122, 275, 443, 492
HapII	CCGG	7 cut(s)	143, 152, 191, 276, 326, 456, 661
HgaI	GACGC	1 cut(s)	46
HhaI	GCGC	3 cut(s)	23, 266, 667
Hin1I	GRCGYC	3 cut(s)	21, 38, 665
Hin1II	CATG	1 cut(s)	784
Hin6I	GCGC	3 cut(s)	21, 264, 665
HinP1I	GCGC	3 cut(s)	21, 264, 665
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	6 cut(s)	68, 251, 319, 412, 809, 891
HpaII	CCGG	7 cut(s)	143, 152, 191, 276, 326, 456, 661
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	5 cut(s)	49, 83, 177, 291, 991
Hpy188I	TCNGA	7 cut(s)	184, 561, 579, 610, 628, 1083, 1122
Hpy188III	TCNNGA	5 cut(s)	245, 367, 709, 946, 998
Hpy8I	GTNNAC	5 cut(s)	49, 83, 177, 291, 991
Hpy99I	CGWCG	3 cut(s)	40, 128, 298
HpyAV	CCTTC	4 cut(s)	94, 633, 657, 745
HpyCH4III	ACNGT	1 cut(s)	995
HpyCH4IV	ACGT	2 cut(s)	293, 922
HpyCH4V	TGCA	4 cut(s)	83, 531, 644, 1096
HpyF10VI	GCNNNNNNNGC	6 cut(s)	148, 272, 484, 521, 852, 1141
HpyF3I	CTNAG	5 cut(s)	222, 438, 519, 789, 1007
HpySE526I	ACGT	2 cut(s)	293, 922
Hsp92I	GRCGYC	3 cut(s)	21, 38, 665
Hsp92II	CATG	1 cut(s)	784
HspAI	GCGC	3 cut(s)	21, 264, 665
KasI	GGCGCC	2 cut(s)	20, 664
KroI	GCCGGC	1 cut(s)	275
KroNI	GCCGGC	1 cut(s)	277
Ksp22I	TGATCA	1 cut(s)	775
Kzo9I	GATC	7 cut(s)	136, 216, 241, 390, 427, 499, 775
LguI	GCTCTTC	1 cut(s)	948
LmnI	GCTCC	4 cut(s)	148, 172, 193, 520
Lsp1109I	GCAGC	2 cut(s)	38, 103
MaeII	ACGT	2 cut(s)	293, 922
MaeIII	GTNAC	6 cut(s)	73, 268, 601, 892, 926, 1137
MalI	GATC	7 cut(s)	138, 218, 243, 392, 429, 501, 777
MboI	GATC	7 cut(s)	136, 216, 241, 390, 427, 499, 775
MboII	GAAGA	8 cut(s)	48, 140, 226, 260, 472, 566, 854, 965
MflI	RGATCY	2 cut(s)	241, 427
MhlI	GDGCHC	4 cut(s)	85, 198, 339, 1158
MluCI	AATT	4 cut(s)	681, 898, 1035, 1055
Mly113I	GGCGCC	2 cut(s)	21, 665
MlyI	GAGTC	4 cut(s)	62, 245, 406, 900
MroNI	GCCGGC	1 cut(s)	275
MroXI	GAANNNNTTC	1 cut(s)	230
MseI	TTAA	4 cut(s)	111, 815, 882, 975
MspCI	CTTAAG	1 cut(s)	814
MspI	CCGG	7 cut(s)	143, 152, 191, 276, 326, 456, 661
MspR9I	CCNGG	6 cut(s)	386, 457, 662, 699, 857, 1046
Mva1269I	GAATGC	1 cut(s)	646
MvaI	CCWGG	4 cut(s)	386, 699, 857, 1046
MvnI	CGCG	1 cut(s)	747
MwoI	GCNNNNNNNGC	6 cut(s)	148, 272, 484, 521, 852, 1141
NaeI	GCCGGC	1 cut(s)	277
NarI	GGCGCC	2 cut(s)	21, 665
NciI	CCSGG	2 cut(s)	457, 662
NdeII	GATC	7 cut(s)	136, 216, 241, 390, 427, 499, 775
NgoMIV	GCCGGC	1 cut(s)	275
NlaIII	CATG	1 cut(s)	784
NlaIV	GGNNCC	6 cut(s)	22, 150, 243, 454, 666, 1155
NmeAIII	GCCGAG	2 cut(s)	31, 468
NmuCI	GTSAC	2 cut(s)	73, 892
NspI	RCATGY	1 cut(s)	784
PaeR7I	CTCGAG	1 cut(s)	236
PciSI	GCTCTTC	1 cut(s)	948
PcsI	WCGNNNNNNNCGW	1 cut(s)	290
PctI	GAATGC	1 cut(s)	646
PdiI	GCCGGC	1 cut(s)	277
PdmI	GAANNNNTTC	1 cut(s)	230
PfeI	GAWTC	2 cut(s)	319, 809
PflFI	GACNNNGTC	1 cut(s)	71
PfoI	TCCNGGA	1 cut(s)	455
PkrI	GCNGC	6 cut(s)	25, 28, 93, 96, 208, 746
PleI	GAGTC	4 cut(s)	62, 245, 406, 899
PluTI	GGCGCC	2 cut(s)	24, 668
PpsI	GAGTC	4 cut(s)	62, 245, 406, 899
PpuMI	RGGWCCY	2 cut(s)	313, 754
PsiI	TTATAA	1 cut(s)	1025
Psp124BI	GAGCTC	1 cut(s)	198
Psp5II	RGGWCCY	2 cut(s)	313, 754
Psp6I	CCWGG	4 cut(s)	384, 697, 855, 1044
PspFI	CCCAGC	2 cut(s)	117, 733
PspGI	CCWGG	4 cut(s)	384, 697, 855, 1044
PspN4I	GGNNCC	6 cut(s)	22, 150, 243, 454, 666, 1155
PspPI	GGNCC	4 cut(s)	120, 313, 442, 754
PspPPI	RGGWCCY	2 cut(s)	313, 754
PspXI	VCTCGAGB	1 cut(s)	236
PsrI	GAACNNNNNNTAC	2 cut(s)	685, 717
PsuI	RGATCY	2 cut(s)	241, 427
PsyI	GACNNNGTC	1 cut(s)	71
RsaI	GTAC	5 cut(s)	290, 304, 703, 983, 992
RsaNI	GTAC	5 cut(s)	289, 303, 702, 982, 991
SacI	GAGCTC	1 cut(s)	198
SalI	GTCGAC	1 cut(s)	47
SapI	GCTCTTC	1 cut(s)	948
SaqAI	TTAA	4 cut(s)	111, 815, 882, 975
SatI	GCNGC	6 cut(s)	24, 27, 92, 95, 207, 745
Sau3AI	GATC	7 cut(s)	136, 216, 241, 390, 427, 499, 775
Sau96I	GGNCC	4 cut(s)	120, 313, 442, 754
ScaI	AGTACT	1 cut(s)	304
SchI	GAGTC	4 cut(s)	62, 245, 406, 900
ScrFI	CCNGG	6 cut(s)	386, 457, 662, 699, 857, 1046
SduI	GDGCHC	4 cut(s)	85, 198, 339, 1158
SfoI	GGCGCC	2 cut(s)	22, 666
Sfr274I	CTCGAG	1 cut(s)	236
SinI	GGWCC	2 cut(s)	313, 754
SlaI	CTCGAG	1 cut(s)	236
SmlI	CTYRAG	4 cut(s)	236, 338, 814, 907
SmoI	CTYRAG	4 cut(s)	236, 338, 814, 907
Sse9I	AATT	4 cut(s)	681, 898, 1035, 1055
SsiI	CCGC	8 cut(s)	24, 89, 95, 140, 207, 332, 419, 745
SspDI	GGCGCC	2 cut(s)	20, 664
SstI	GAGCTC	1 cut(s)	198
StyD4I	CCNGG	6 cut(s)	384, 455, 660, 697, 855, 1044
TaaI	ACNGT	1 cut(s)	995
TaiI	ACGT	2 cut(s)	296, 925
TaqI	TCGA	5 cut(s)	48, 198, 237, 722, 765
TasI	AATT	4 cut(s)	681, 898, 1035, 1055
TatI	WGTACW	3 cut(s)	302, 981, 990
TauI	GCSGC	4 cut(s)	26, 97, 209, 747
TfiI	GAWTC	2 cut(s)	319, 809
Tru1I	TTAA	4 cut(s)	111, 815, 882, 975
Tru9I	TTAA	4 cut(s)	111, 815, 882, 975
TscAI	CASTG	4 cut(s)	22, 85, 226, 601
TseFI	GTSAC	2 cut(s)	73, 892
TseI	GCWGC	2 cut(s)	26, 91
Tsp45I	GTSAC	2 cut(s)	73, 892
TspDTI	ATGAA	3 cut(s)	740, 900, 1017
TspGWI	ACGGA	1 cut(s)	162
TspRI	CASTG	4 cut(s)	22, 85, 226, 601
Tth111I	GACNNNGTC	1 cut(s)	71
Vha464I	CTTAAG	1 cut(s)	814
VneI	GTGCAC	1 cut(s)	81
VpaK11BI	GGWCC	2 cut(s)	313, 754
XapI	RAATTY	2 cut(s)	898, 1035
XceI	RCATGY	1 cut(s)	784
XcmI	CCANNNNNNNNNTGG	1 cut(s)	547
XhoI	CTCGAG	1 cut(s)	236
XmiI	GTMKAC	2 cut(s)	48, 176
XmnI	GAANNNNTTC	1 cut(s)	230
ZrmI	AGTACT	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.