Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001022

Physical Location & Seq

Genomic Coordinates Forward (+)

9542923 .. 9545905

Gene Structure 2983 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0117500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGACATAGCTCTCTTTTCCCCATCTTCCCTTTTTGCCAACGACGACGACTCTTCCAGTGGTGAGGAAAACACAGAGACCCAGCAAAGCTTCGTAGAGAGGAAGCATCAGTTTCCTGGAATGGAGTTGATCGTTCGAGAATTTTCATTTCATCAGCTGAATGCCAATTTACTCTGGCCGGGGACATTTGCATTTGCAGAATGGTTAATTCAAAACAGGCCATTGATTGAGGGACGGCATTGTATTGAACTGGGCAGTGGTACTGGTGCTTTGGCCATTTTCCTACAAAGATTGTGTAATCTTGACATCACTACATCAGACTATAATGATCAAGAAATTGAAGAGAATATAGCTTACAACTGCAGGGTAAATGGAATTGCACCTGCTCTCCCTCATATAAAGCATACCTGGGGTGACAGCTTCCCTAATAGGGATCCAGACTGGGACCTAATTATTGCGAGTGATATCTTATTGTATGTGAAACAGTATCCAAATTTGATAAAAAGTCTTTCGTTTCTCCTCACATCTTACAAGCCAAAGGAGAATGAATCACAGCCTCGACCCAAGGACGAGCCAACTGGACAATCTTTCAGTTTACCTCGGCCGTCATTTCTGATGAGTTGGAGACGAAGAATTGGAAAAGAGGACGAATCACTGTTCTTCACAGGGTGTGAGGATGCTGGTCTTGAAGTAATGCATCTGGGCTCCCGGGTGTATTGCATCAAACCTAGAGAAAGTACTACAAACGGCGACCAAATAGTGAATTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005730 GO:0005737 GO:0005886 GO:0006139 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008026 GO:0008104 GO:0008150 GO:0008152 GO:0008186 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010467 GO:0010501 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0016973 GO:0017111 GO:0031503 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0033036 GO:0033993 GO:0034613 GO:0034641 GO:0042221 GO:0042623 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070013 GO:0070035 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0090304 GO:0097305 GO:0140098 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

256

Amino Acids

29.12

Weight (kDa)

4.89

Isoelectric Point (pI)

50.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_16	PF10294	54 - 175	6.3e-13	Lysine methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53110
fragaria_vesca	FvH4_6g17230 FvH4_6g17230 FvH4_6g17230 FvH4_6g17280 FvH4_6g17280
malus_domestica	MD12G1102600.v1.1 MD14G1096800.v1.1
prunus_persica	Prupe.3G009100_v2.0.a1 Prupe.7G122600_v2.0.a1
pyrus_communis	pycom03g08760 pycom12g10060 pycom14g09450
rosa_chinensis	RchiOBHm_Chr3g0471311 RchiOBHm_Chr3g0471321 RchiOBHm_Chr3g0471361 RchiOBHm_Chr3g0471391
rosa_laevigata	RLG00000024181 RLG00000024187 RLG00000024188
rosa_multiflora	Rmu_sc0006582.1_g000015 Rmu_sc0006582.1_g000018 Rmu_sc0009082.1_g000003 Rmu_sc0010513.1_g000003 Rmu_sc0015755.1_g000002 Rmu_sc0030425.1_g000001
rosa_roxburghii	Rroxscaffold_6G00409980 Rroxscaffold_6G00410000 Rroxscaffold_6G00410060 Rroxscaffold_6G00410080
rosa_rugosa	Rorug03G0117100 Rorug03G0117100 Rorug03G0117100 Rorug03G0117400 Rorug03G0117500 Rorug03G0117500
rosa_samantha	Rh3AG166500 Rh3AG166600 Rh3AG166700 Rh3AG167100 Rh3BG191900 Rh3BG192000 Rh3BG192100 Rh3BG192400 Rh3BG192500 Rh3BG192800 Rh3CG182200 Rh3CG182300 Rh3CG182400 Rh3CG182700 Rh3CG182800 Rh3CG183200 Rh3DG182700 Rh3DG183100 Rh3DG183200 Rh3DG183700 Rh3DG183800
rosa_wichuraiana	Rw3G015670 Rw3G015680 Rw3G015730 Rw3G015760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	391
Acc36I	ACCTGC	1 cut(s)	391
AclWI	GGATC	2 cut(s)	428, 441
AcoI	YGGCCR	3 cut(s)	176, 273, 602
AcsI	RAATTY	3 cut(s)	140, 493, 763
AdeI	CACNNNGTG	1 cut(s)	669
AfaI	GTAC	2 cut(s)	262, 739
AfiI	CCNNNNNNNGG	1 cut(s)	430
AgsI	TTSAA	4 cut(s)	212, 248, 341, 689
AjnI	CCWGG	2 cut(s)	115, 407
AluBI	AGCT	5 cut(s)	11, 90, 157, 353, 420
AluI	AGCT	5 cut(s)	11, 90, 157, 353, 420
Alw26I	GTCTC	2 cut(s)	71, 619
AlwI	GGATC	2 cut(s)	428, 441
Ama87I	CYCGRG	1 cut(s)	708
AoxI	GGCC	4 cut(s)	176, 218, 273, 602
ApoI	RAATTY	3 cut(s)	140, 493, 763
AspS9I	GGNCC	1 cut(s)	445
AsuC2I	CCSGG	3 cut(s)	180, 709, 710
AsuHPI	GGTGA	2 cut(s)	74, 425
AvaI	CYCGRG	1 cut(s)	708
AvaII	GGWCC	1 cut(s)	445
BalI	TGGCCA	1 cut(s)	275
BamHI	GGATCC	1 cut(s)	433
BanII	GRGCYC	1 cut(s)	707
BccI	CCATC	1 cut(s)	31
BceAI	ACGGC	3 cut(s)	251, 589, 763
BciT130I	CCWGG	2 cut(s)	117, 409
BciVI	GTATCC	1 cut(s)	498
BclI	TGATCA	1 cut(s)	328
BcnI	CCSGG	3 cut(s)	180, 709, 710
BcoDI	GTCTC	2 cut(s)	71, 619
BfaI	CTAG	1 cut(s)	729
BfmI	CTRYAG	1 cut(s)	361
BfuAI	ACCTGC	1 cut(s)	391
BfuI	GTATCC	1 cut(s)	498
BmcAI	AGTACT	1 cut(s)	739
Bme1390I	CCNGG	5 cut(s)	117, 180, 409, 709, 710
Bme18I	GGWCC	1 cut(s)	445
BmeT110I	CYCGRG	1 cut(s)	708
BmgT120I	GGNCC	1 cut(s)	445
BmiI	GGNNCC	3 cut(s)	435, 446, 706
BmrFI	CCNGG	5 cut(s)	117, 180, 409, 709, 710
BmrI	ACTGGG	2 cut(s)	260, 451
BmsI	GCATC	4 cut(s)	115, 667, 706, 729
BmuI	ACTGGG	2 cut(s)	260, 451
BpuMI	CCSGG	3 cut(s)	180, 709, 710
BsaI	GGTCTC	1 cut(s)	71
BsaJI	CCNNGG	5 cut(s)	179, 408, 564, 599, 708
BsaXI	ACNNNNNCTCC	2 cut(s)	372, 402
Bsc4I	CCNNNNNNNGG	1 cut(s)	430
Bse1I	ACTGG	5 cut(s)	57, 255, 268, 446, 583
BseBI	CCWGG	2 cut(s)	117, 409
BseDI	CCNNGG	5 cut(s)	179, 408, 564, 599, 708
BseGI	GGATG	1 cut(s)	682
BseLI	CCNNNNNNNGG	1 cut(s)	430
BseNI	ACTGG	5 cut(s)	57, 255, 268, 446, 583
BseRI	GAGGAG	1 cut(s)	509
BseX3I	CGGCCG	1 cut(s)	602
BseYI	CCCAGC	1 cut(s)	81
Bsh1285I	CGRYCG	1 cut(s)	605
BshFI	GGCC	4 cut(s)	178, 220, 275, 604
BsiEI	CGRYCG	1 cut(s)	605
BsiHKCI	CYCGRG	1 cut(s)	708
BsiSI	CCGG	2 cut(s)	179, 709
BslFI	GGGAC	3 cut(s)	196, 246, 458
BslI	CCNNNNNNNGG	1 cut(s)	430
BsmAI	GTCTC	2 cut(s)	71, 619
BsmBI	CGTCTC	1 cut(s)	619
BsmFI	GGGAC	3 cut(s)	196, 246, 458
BsmI	GAATGC	1 cut(s)	166
BsnI	GGCC	4 cut(s)	178, 220, 275, 604
Bso31I	GGTCTC	1 cut(s)	71
BsoBI	CYCGRG	1 cut(s)	708
Bsp1286I	GDGCHC	1 cut(s)	707
Bsp143I	GATC	3 cut(s)	129, 328, 433
BspANI	GGCC	4 cut(s)	178, 220, 275, 604
BspLI	GGNNCC	3 cut(s)	435, 446, 706
BspMAI	CTGCAG	1 cut(s)	365
BspMI	ACCTGC	1 cut(s)	391
BspPI	GGATC	2 cut(s)	428, 441
BspTNI	GGTCTC	1 cut(s)	71
BsrI	ACTGG	5 cut(s)	57, 255, 268, 446, 583
BssECI	CCNNGG	5 cut(s)	179, 408, 564, 599, 708
BssMI	GATC	3 cut(s)	129, 328, 433
BssT1I	CCWWGG	1 cut(s)	564
Bst2UI	CCWGG	2 cut(s)	117, 409
Bst4CI	ACNGT	2 cut(s)	486, 657
Bst6I	CTCTTC	2 cut(s)	58, 336
BstDEI	CTNAG	1 cut(s)	768
BstF5I	GGATG	1 cut(s)	682
BstKTI	GATC	3 cut(s)	132, 331, 436
BstMAI	GTCTC	2 cut(s)	71, 619
BstMBI	GATC	3 cut(s)	129, 328, 433
BstMCI	CGRYCG	1 cut(s)	605
BstNI	CCWGG	2 cut(s)	117, 409
BstSCI	CCNGG	5 cut(s)	115, 178, 407, 707, 708
BstSFI	CTRYAG	1 cut(s)	361
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
BstZI	CGGCCG	1 cut(s)	602
BsuI	GTATCC	1 cut(s)	498
BsuRI	GGCC	4 cut(s)	178, 220, 275, 604
BtsCI	GGATG	1 cut(s)	682
BtsI	GCAGTG	1 cut(s)	262
BtsIMutI	CAGTG	3 cut(s)	64, 262, 653
BveI	ACCTGC	1 cut(s)	391
Cfr13I	GGNCC	1 cut(s)	445
Cfr9I	CCCGGG	1 cut(s)	708
Csp6I	GTAC	2 cut(s)	261, 738
CviQI	GTAC	2 cut(s)	261, 738
DdeI	CTNAG	1 cut(s)	768
DpnI	GATC	3 cut(s)	131, 330, 435
DpnII	GATC	3 cut(s)	129, 328, 433
DraIII	CACNNNGTG	1 cut(s)	669
EaeI	YGGCCR	3 cut(s)	176, 273, 602
EagI	CGGCCG	1 cut(s)	602
Eam1104I	CTCTTC	2 cut(s)	58, 336
EarI	CTCTTC	2 cut(s)	58, 336
EclXI	CGGCCG	1 cut(s)	602
Eco130I	CCWWGG	1 cut(s)	564
Eco24I	GRGCYC	1 cut(s)	707
Eco31I	GGTCTC	1 cut(s)	71
Eco32I	GATATC	1 cut(s)	466
Eco47I	GGWCC	1 cut(s)	445
Eco52I	CGGCCG	1 cut(s)	602
Eco88I	CYCGRG	1 cut(s)	708
EcoO109I	RGGNCCY	1 cut(s)	445
EcoRI	GAATTC	1 cut(s)	763
EcoRII	CCWGG	2 cut(s)	115, 407
EcoRV	GATATC	1 cut(s)	466
EcoT14I	CCWWGG	1 cut(s)	564
EcoT22I	ATGCAT	1 cut(s)	699
EcoT38I	GRGCYC	1 cut(s)	707
ErhI	CCWWGG	1 cut(s)	564
Esp3I	CGTCTC	1 cut(s)	619
FaiI	YATR	7 cut(s)	8, 324, 350, 396, 398, 405, 477
FaqI	GGGAC	3 cut(s)	196, 246, 458
FbaI	TGATCA	1 cut(s)	328
FokI	GGATG	1 cut(s)	689
FriOI	GRGCYC	1 cut(s)	707
FspBI	CTAG	1 cut(s)	729
GsaI	CCCAGC	1 cut(s)	85
HaeIII	GGCC	4 cut(s)	178, 220, 275, 604
HapII	CCGG	2 cut(s)	179, 709
HindIII	AAGCTT	1 cut(s)	88
HinfI	GANTC	3 cut(s)	50, 548, 650
HpaII	CCGG	2 cut(s)	179, 709
HphI	GGTGA	2 cut(s)	74, 425
Hpy166II	GTNNAC	1 cut(s)	596
Hpy188I	TCNGA	2 cut(s)	319, 615
Hpy188III	TCNNGA	5 cut(s)	137, 302, 332, 437, 686
Hpy8I	GTNNAC	1 cut(s)	596
Hpy99I	CGWCG	2 cut(s)	47, 50
HpyCH4III	ACNGT	2 cut(s)	486, 657
HpyCH4V	TGCA	6 cut(s)	191, 197, 363, 380, 697, 720
HpyF3I	CTNAG	1 cut(s)	768
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	3 cut(s)	129, 328, 433
LmnI	GCTCC	1 cut(s)	710
LweI	GCATC	4 cut(s)	115, 667, 706, 729
MaeI	CTAG	1 cut(s)	729
MaeIII	GTNAC	1 cut(s)	413
MalI	GATC	3 cut(s)	131, 330, 435
MboI	GATC	3 cut(s)	129, 328, 433
MboII	GAAGA	5 cut(s)	18, 45, 353, 642, 652
MflI	RGATCY	1 cut(s)	433
MhlI	GDGCHC	1 cut(s)	707
MlsI	TGGCCA	1 cut(s)	275
MluCI	AATT	9 cut(s)	140, 166, 207, 336, 375, 450, 493, 633, 763
MluNI	TGGCCA	1 cut(s)	275
MlyI	GAGTC	1 cut(s)	44
MmeI	TCCRAC	1 cut(s)	602
MnlI	CCTC	9 cut(s)	58, 93, 223, 402, 530, 567, 609, 637, 667
Mox20I	TGGCCA	1 cut(s)	275
Mph1103I	ATGCAT	1 cut(s)	699
MscI	TGGCCA	1 cut(s)	275
MseI	TTAA	1 cut(s)	206
Msp20I	TGGCCA	1 cut(s)	275
MspA1I	CMGCKG	1 cut(s)	157
MspI	CCGG	2 cut(s)	179, 709
MspR9I	CCNGG	5 cut(s)	117, 180, 409, 709, 710
Mva1269I	GAATGC	1 cut(s)	166
MvaI	CCWGG	2 cut(s)	117, 409
NciI	CCSGG	3 cut(s)	180, 709, 710
NdeII	GATC	3 cut(s)	129, 328, 433
NlaIV	GGNNCC	3 cut(s)	435, 446, 706
NmeAIII	GCCGAG	1 cut(s)	580
NmuCI	GTSAC	1 cut(s)	413
NsiI	ATGCAT	1 cut(s)	699
PaqCI	CACCTGC	1 cut(s)	391
PctI	GAATGC	1 cut(s)	166
PfeI	GAWTC	2 cut(s)	548, 650
PfoI	TCCNGGA	1 cut(s)	115
PleI	GAGTC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	44
PpuMI	RGGWCCY	1 cut(s)	445
Psp5II	RGGWCCY	1 cut(s)	445
Psp6I	CCWGG	2 cut(s)	115, 407
PspFI	CCCAGC	1 cut(s)	81
PspGI	CCWGG	2 cut(s)	115, 407
PspN4I	GGNNCC	3 cut(s)	435, 446, 706
PspPI	GGNCC	1 cut(s)	445
PspPPI	RGGWCCY	1 cut(s)	445
PstI	CTGCAG	1 cut(s)	365
PsuI	RGATCY	1 cut(s)	433
PvuII	CAGCTG	1 cut(s)	157
RsaI	GTAC	2 cut(s)	262, 739
RsaNI	GTAC	2 cut(s)	261, 738
SaqAI	TTAA	1 cut(s)	206
Sau3AI	GATC	3 cut(s)	129, 328, 433
Sau96I	GGNCC	1 cut(s)	445
ScaI	AGTACT	1 cut(s)	739
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	5 cut(s)	117, 180, 409, 709, 710
SduI	GDGCHC	1 cut(s)	707
SfaNI	GCATC	4 cut(s)	115, 667, 706, 729
SfcI	CTRYAG	1 cut(s)	361
SinI	GGWCC	1 cut(s)	445
SmaI	CCCGGG	1 cut(s)	710
Sse9I	AATT	9 cut(s)	140, 166, 207, 336, 375, 450, 493, 633, 763
SspMI	CTAG	1 cut(s)	729
StyD4I	CCNGG	5 cut(s)	115, 178, 407, 707, 708
StyI	CCWWGG	1 cut(s)	564
TaaI	ACNGT	2 cut(s)	486, 657
TaqI	TCGA	2 cut(s)	136, 559
TasI	AATT	9 cut(s)	140, 166, 207, 336, 375, 450, 493, 633, 763
TatI	WGTACW	1 cut(s)	737
TfiI	GAWTC	2 cut(s)	548, 650
Tru1I	TTAA	1 cut(s)	206
Tru9I	TTAA	1 cut(s)	206
TscAI	CASTG	3 cut(s)	64, 262, 660
TseFI	GTSAC	1 cut(s)	413
Tsp45I	GTSAC	1 cut(s)	413
TspDTI	ATGAA	3 cut(s)	135, 140, 561
TspMI	CCCGGG	1 cut(s)	708
TspRI	CASTG	3 cut(s)	64, 262, 660
VpaK11BI	GGWCC	1 cut(s)	445
XapI	RAATTY	3 cut(s)	140, 493, 763
XmaI	CCCGGG	1 cut(s)	708
XspI	CTAG	1 cut(s)	729
ZrmI	AGTACT	1 cut(s)	739
Zsp2I	ATGCAT	1 cut(s)	699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.