Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001022

Physical Location & Seq

Genomic Coordinates Forward (+)

16225954 .. 16230463

Gene Structure 4510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG182700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1524 bp

ATGGCCGAGACTGACACTGCCGCCGCCGCCACCACAACGACGCCACCAGTCGACACTTCTTCCTCCACCGACTCTGTCACCAGTGCGCCTCCTCCGCCGCCGGCGAAGCCCGTGATTAAATGCTGGGCCGACGAAGAGGATGATCCGCCGGAGGAGCCGGAGAAAACCGAAGCTCCTCCGTCTACTTCAGACCAGCCGGAGCTCGAAGTCGCCGCATTAAAGATCACTGAGAACAAGTTCCTCGACGATCCTGAAGACTCTAATATCAGCGCCGTTACGGCCGGCGACACGCCGTACACGTCGGCGAGTACTTTCGAGGACCTGAATCTACCGGAGGCGGTGCTCAAGGGTTTGTATGTAGAGATGGGCTTCAAGAAGCCCAGTAAAATCCAGGCGATCACCTTGCCTATGATTTTGACTCCTCCGTACAAAGATCTGGTTGCTCAGGCCCATAATGGTTCCGGGAAGACGACTTGTTTCGTGCTTGGTATGCTTGGCCGTGTTGATCCCAATGTGAAAGCTCCTCAGGCTCTCTGCATTTGTCCCACCAGAGAGTTGGCTATTCAGAATATGGAGGTTCTTCAGAAAATGGGGAAATACACTGGGATTACTTCGGAGTGTGCCGTCCCTTCAGATAGGGAGAGGAATGCACCTTCGCCTAACTTCAGGGCGCCAGTTACGGCACAAATTGTGATTGGAACTCCTGGTACTATCAAGAGATGGATGTCGACGAAAAAGCTGGGTGTAAGCCGCGTGAAGGTCCTTGTTTTCGATGAGGCTGATCACATGCTGGCTGAGGATGGCTTCCAAGATGATTCCTTAAGGATAAAGAGGGACACAGAAAAAGTTAGCCCTAACTGCCAGGTTCTTCTGTTTTCAGCTACATTTAATGAAAGAGTCACAAATTTTGTCTCAAGGGTTGTGAAACGTGGTAACAATCAACTTTTTGTCAAGAAAGAAGAGCTATCTTTGGAGGGTGTTAAGCAGTACAAGGTGTACTGTCCTGATGAACTGAGCAAGATTGAGGTTATCAAGACCAAAATTTTTGACCTGGGAGAAAAATTAGGACAGAGGATTATATTTGTTCGGACAAAAAATAGCGCAAGAATGTTGTATCAACAACTTTCTGATGATGGTTATGCTGTTACTGCTATTCAAGGTGCCCTCAACACCGAGGACAGAGACAAAATAATCAAAGAGTTTAAAGATGGTTTAACCCAAGTTCTCATATCAACTGATGTACTTGCCAGAGGCTTTGACCAACAGCAGGTTAACTGTGTTGTCAATTATGATCTTCCGGTCAAATATTCACCTGGTCCCCGGTCACAACCTGTAGAACCTGATTATGAGGTGTACCTGCATAGAATTGGCAGGGCAGGGCGTTTTGGTCGCAAGGGTAAGTTTCTGATTCCTGTATCTGTCGTACGGACTGTTCCATTTATATTTTCTATTCTGTCCCTTTCCATATATTGGGACTGCAACACCCAAAAAGGAAAAAAAGAAAAAGAATACTATTTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005730 GO:0005737 GO:0005886 GO:0006139 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008026 GO:0008104 GO:0008150 GO:0008152 GO:0008186 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010467 GO:0010501 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0016973 GO:0017111 GO:0031503 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0033036 GO:0033993 GO:0034613 GO:0034641 GO:0042221 GO:0042623 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070013 GO:0070035 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0090304 GO:0097305 GO:0140098 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

507

Amino Acids

56.24

Weight (kDa)

5.64

Isoelectric Point (pI)

38.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	129 - 301	8.3e-36	DEAD/DEAH box helicase
ResIII	PF04851	145 - 297	1.3e-07	Type III restriction enzyme, res subunit
Helicase_C	PF00271	345 - 463	4.6e-25	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53110
fragaria_vesca	FvH4_6g17230 FvH4_6g17230 FvH4_6g17230 FvH4_6g17280 FvH4_6g17280
malus_domestica	MD12G1102600.v1.1 MD14G1096800.v1.1
prunus_persica	Prupe.3G009100_v2.0.a1 Prupe.7G122600_v2.0.a1
pyrus_communis	pycom03g08760 pycom12g10060 pycom14g09450
rosa_chinensis	RchiOBHm_Chr3g0471311 RchiOBHm_Chr3g0471321 RchiOBHm_Chr3g0471361 RchiOBHm_Chr3g0471391
rosa_laevigata	RLG00000024181 RLG00000024187 RLG00000024188
rosa_multiflora	Rmu_sc0006582.1_g000015 Rmu_sc0006582.1_g000018 Rmu_sc0009082.1_g000003 Rmu_sc0010513.1_g000003 Rmu_sc0015755.1_g000002 Rmu_sc0030425.1_g000001
rosa_roxburghii	Rroxscaffold_6G00409980 Rroxscaffold_6G00410000 Rroxscaffold_6G00410060 Rroxscaffold_6G00410080
rosa_rugosa	Rorug03G0117100 Rorug03G0117100 Rorug03G0117100 Rorug03G0117400 Rorug03G0117500 Rorug03G0117500
rosa_samantha	Rh3AG166500 Rh3AG166600 Rh3AG166700 Rh3AG167100 Rh3BG191900 Rh3BG192000 Rh3BG192100 Rh3BG192400 Rh3BG192500 Rh3BG192800 Rh3CG182200 Rh3CG182300 Rh3CG182400 Rh3CG182700 Rh3CG182800 Rh3CG183200 Rh3DG182700 Rh3DG183100 Rh3DG183200 Rh3DG183700 Rh3DG183800
rosa_wichuraiana	Rw3G015670 Rw3G015680 Rw3G015730 Rw3G015760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1258, 1365
AccB1I	GGYRCC	2 cut(s)	670, 1160
AccB7I	CCANNNNNTGG	1 cut(s)	1470
AccI	GTMKAC	3 cut(s)	51, 182, 728
AccII	CGCG	1 cut(s)	753
AciI	CCGC	9 cut(s)	21, 24, 27, 95, 98, 146, 213, 338, 751
AclWI	GGATC	3 cut(s)	137, 242, 500
AcoI	YGGCCR	3 cut(s)	3, 279, 496
AcsI	RAATTY	2 cut(s)	904, 1041
AcuI	CTGAAG	5 cut(s)	171, 273, 566, 615, 649
AcyI	GRCGYC	2 cut(s)	41, 671
AfaI	GTAC	9 cut(s)	296, 310, 428, 709, 989, 998, 1242, 1355, 1425
AfiI	CCNNNNNNNGG	3 cut(s)	757, 1267, 1470
AflII	CTTAAG	1 cut(s)	820
AflIII	ACRYGT	1 cut(s)	297
AgsI	TTSAA	2 cut(s)	373, 1157
AjiI	CACGTC	1 cut(s)	300
AjnI	CCWGG	5 cut(s)	390, 703, 861, 1050, 1312
AluBI	AGCT	6 cut(s)	173, 202, 521, 739, 881, 964
AluI	AGCT	6 cut(s)	173, 202, 521, 739, 881, 964
Alw21I	GWGCWC	2 cut(s)	204, 345
Alw26I	GTCTC	3 cut(s)	2, 916, 1176
AlwI	GGATC	3 cut(s)	137, 242, 500
AoxI	GGCC	5 cut(s)	3, 126, 279, 447, 496
ApoI	RAATTY	2 cut(s)	904, 1041
Asp700I	GAANNNNTTC	1 cut(s)	236
AspLEI	GCGC	4 cut(s)	88, 272, 673, 1103
AspS9I	GGNCC	5 cut(s)	126, 319, 448, 760, 1316
AsuC2I	CCSGG	2 cut(s)	463, 1321
AsuHPI	GGTGA	3 cut(s)	70, 391, 1302
AvaII	GGWCC	3 cut(s)	319, 760, 1316
AxyI	CCTNAGG	1 cut(s)	525
BaeGI	GKGCMC	1 cut(s)	1165
BanI	GGYRCC	2 cut(s)	670, 1160
BanII	GRGCYC	1 cut(s)	204
BbsI	GAAGAC	2 cut(s)	261, 473
Bbv12I	GWGCWC	2 cut(s)	204, 345
BbvCI	CCTCAGC	1 cut(s)	795
BccI	CCATC	5 cut(s)	358, 714, 794, 1127, 1202
BceAI	ACGGC	6 cut(s)	257, 277, 294, 483, 608, 696
BcgI	CGANNNNNNTGC	2 cut(s)	385, 419
BciT130I	CCWGG	5 cut(s)	392, 705, 863, 1052, 1314
BclI	TGATCA	1 cut(s)	781
BcnI	CCSGG	2 cut(s)	463, 1321
BcoDI	GTCTC	3 cut(s)	2, 916, 1176
BfmI	CTRYAG	1 cut(s)	1332
BfoI	RGCGCY	2 cut(s)	273, 674
BfrI	CTTAAG	1 cut(s)	820
BfuAI	ACCTGC	2 cut(s)	1258, 1365
BglI	GCCNNNNNGGC	1 cut(s)	278
BglII	AGATCT	1 cut(s)	433
BisI	GCNGC	6 cut(s)	21, 24, 27, 98, 213, 751
BlsI	GCNGC	6 cut(s)	22, 25, 28, 99, 214, 752
BmcAI	AGTACT	1 cut(s)	310
Bme1390I	CCNGG	7 cut(s)	392, 463, 705, 863, 1052, 1314, 1321
Bme18I	GGWCC	3 cut(s)	319, 760, 1316
BmgBI	CACGTC	1 cut(s)	300
BmgT120I	GGNCC	5 cut(s)	126, 319, 448, 760, 1316
BmiI	GGNNCC	5 cut(s)	156, 460, 672, 1162, 1318
BmrFI	CCNGG	7 cut(s)	392, 463, 705, 863, 1052, 1314, 1321
BmrI	ACTGGG	2 cut(s)	375, 612
BmuI	ACTGGG	2 cut(s)	375, 612
BpiI	GAAGAC	2 cut(s)	261, 473
Bpu10I	CCTNAGC	2 cut(s)	444, 795
BpuEI	CTTGAG	2 cut(s)	329, 898
BpuMI	CCSGG	2 cut(s)	463, 1321
BsaHI	GRCGYC	2 cut(s)	41, 671
BsaJI	CCNNGG	3 cut(s)	1051, 1173, 1319
BsaWI	WCCGGW	2 cut(s)	331, 1297
BsaXI	ACNNNNNCTCC	2 cut(s)	157, 187
Bsc4I	CCNNNNNNNGG	3 cut(s)	757, 1267, 1470
Bse118I	RCCGGY	2 cut(s)	100, 281
Bse1I	ACTGG	5 cut(s)	47, 81, 381, 607, 674
Bse21I	CCTNAGG	1 cut(s)	525
BseBI	CCWGG	5 cut(s)	392, 705, 863, 1052, 1314
BseDI	CCNNGG	3 cut(s)	1051, 1173, 1319
BseGI	GGATG	3 cut(s)	145, 729, 805
BseLI	CCNNNNNNNGG	3 cut(s)	757, 1267, 1470
BseMII	CTCAG	5 cut(s)	219, 458, 539, 786, 1004
BseNI	ACTGG	5 cut(s)	47, 81, 381, 607, 674
BseRI	GAGGAG	5 cut(s)	81, 165, 167, 411, 513
BseSI	GKGCMC	1 cut(s)	1165
BseX3I	CGGCCG	1 cut(s)	279
BseYI	CCCAGC	2 cut(s)	123, 739
Bsh1236I	CGCG	1 cut(s)	753
Bsh1285I	CGRYCG	1 cut(s)	282
BshFI	GGCC	5 cut(s)	5, 128, 281, 449, 498
BshNI	GGYRCC	2 cut(s)	670, 1160
BsiEI	CGRYCG	1 cut(s)	282
BsiHKAI	GWGCWC	2 cut(s)	204, 345
BsiSI	CCGG	9 cut(s)	101, 149, 158, 197, 282, 332, 462, 1298, 1321
BsiWI	CGTACG	1 cut(s)	1423
BslFI	GGGAC	6 cut(s)	528, 611, 848, 1302, 1441, 1487
BslI	CCNNNNNNNGG	3 cut(s)	757, 1267, 1470
BsmAI	GTCTC	3 cut(s)	2, 916, 1176
BsmFI	GGGAC	6 cut(s)	528, 611, 848, 1302, 1441, 1487
BsmI	GAATGC	1 cut(s)	652
BsnI	GGCC	5 cut(s)	5, 128, 281, 449, 498
Bsp1286I	GDGCHC	3 cut(s)	204, 345, 1165
Bsp143I	GATC	8 cut(s)	142, 222, 247, 396, 433, 505, 781, 1291
BspACI	CCGC	9 cut(s)	21, 24, 27, 95, 98, 146, 213, 338, 751
BspANI	GGCC	5 cut(s)	5, 128, 281, 449, 498
BspCNI	CTCAG	5 cut(s)	220, 457, 538, 787, 1005
BspFNI	CGCG	1 cut(s)	753
BspLI	GGNNCC	5 cut(s)	156, 460, 672, 1162, 1318
BspMI	ACCTGC	2 cut(s)	1258, 1365
BspPI	GGATC	3 cut(s)	137, 242, 500
BspQI	GCTCTTC	1 cut(s)	954
BspT107I	GGYRCC	2 cut(s)	670, 1160
BspTI	CTTAAG	1 cut(s)	820
BsrFI	RCCGGY	2 cut(s)	100, 281
BsrI	ACTGG	5 cut(s)	47, 81, 381, 607, 674
BssAI	RCCGGY	2 cut(s)	100, 281
BssECI	CCNNGG	3 cut(s)	1051, 1173, 1319
BssMI	GATC	8 cut(s)	142, 222, 247, 396, 433, 505, 781, 1291
BssNI	GRCGYC	2 cut(s)	41, 671
Bst2UI	CCWGG	5 cut(s)	392, 705, 863, 1052, 1314
Bst4CI	ACNGT	3 cut(s)	1001, 1277, 1432
Bst6I	CTCTTC	2 cut(s)	129, 954
BstACI	GRCGYC	2 cut(s)	41, 671
BstAFI	CTTAAG	1 cut(s)	820
BstC8I	GCNNGC	3 cut(s)	102, 283, 792
BstDEI	CTNAG	5 cut(s)	228, 444, 525, 795, 1013
BstF5I	GGATG	3 cut(s)	145, 729, 805
BstFNI	CGCG	1 cut(s)	753
BstH2I	RGCGCY	2 cut(s)	273, 674
BstHHI	GCGC	4 cut(s)	88, 272, 673, 1103
BstKTI	GATC	8 cut(s)	145, 225, 250, 399, 436, 508, 784, 1294
BstMAI	GTCTC	3 cut(s)	2, 916, 1176
BstMBI	GATC	8 cut(s)	142, 222, 247, 396, 433, 505, 781, 1291
BstMCI	CGRYCG	1 cut(s)	282
BstMWI	GCNNNNNNNGC	9 cut(s)	26, 94, 106, 154, 278, 490, 527, 858, 1148
BstNI	CCWGG	5 cut(s)	392, 705, 863, 1052, 1314
BstNSI	RCATGY	1 cut(s)	790
BstSCI	CCNGG	7 cut(s)	390, 461, 703, 861, 1050, 1312, 1319
BstSFI	CTRYAG	1 cut(s)	1332
BstSLI	GKGCMC	1 cut(s)	1165
BstUI	CGCG	1 cut(s)	753
BstV2I	GAAGAC	2 cut(s)	261, 473
BstX2I	RGATCY	1 cut(s)	433
BstXI	CCANNNNNNTGG	1 cut(s)	556
BstYI	RGATCY	1 cut(s)	433
BstZI	CGGCCG	1 cut(s)	279
Bsu36I	CCTNAGG	1 cut(s)	525
BsuRI	GGCC	5 cut(s)	5, 128, 281, 449, 498
BtrI	CACGTC	1 cut(s)	300
BtsCI	GGATG	3 cut(s)	145, 729, 805
BtsI	GCAGTG	1 cut(s)	15
BtsIMutI	CAGTG	4 cut(s)	15, 88, 225, 600
BveI	ACCTGC	2 cut(s)	1258, 1365
Cac8I	GCNNGC	3 cut(s)	102, 283, 792
CfoI	GCGC	4 cut(s)	88, 272, 673, 1103
Cfr10I	RCCGGY	2 cut(s)	100, 281
Cfr13I	GGNCC	5 cut(s)	126, 319, 448, 760, 1316
CseI	GACGC	1 cut(s)	49
CsiI	ACCWGGT	1 cut(s)	1312
Csp6I	GTAC	9 cut(s)	295, 309, 427, 708, 988, 997, 1241, 1354, 1424
CviAII	CATG	1 cut(s)	787
CviQI	GTAC	9 cut(s)	295, 309, 427, 708, 988, 997, 1241, 1354, 1424
DdeI	CTNAG	5 cut(s)	228, 444, 525, 795, 1013
DinI	GGCGCC	1 cut(s)	672
DpnI	GATC	8 cut(s)	144, 224, 249, 398, 435, 507, 783, 1293
DpnII	GATC	8 cut(s)	142, 222, 247, 396, 433, 505, 781, 1291
DraI	TTTAAA	1 cut(s)	1204
EaeI	YGGCCR	3 cut(s)	3, 279, 496
EagI	CGGCCG	1 cut(s)	279
Eam1104I	CTCTTC	2 cut(s)	129, 954
EarI	CTCTTC	2 cut(s)	129, 954
EciI	GGCGGA	2 cut(s)	84, 135
Ecl136II	GAGCTC	1 cut(s)	202
EclXI	CGGCCG	1 cut(s)	279
Eco24I	GRGCYC	1 cut(s)	204
Eco47I	GGWCC	3 cut(s)	319, 760, 1316
Eco52I	CGGCCG	1 cut(s)	279
Eco53kI	GAGCTC	1 cut(s)	202
Eco57I	CTGAAG	5 cut(s)	171, 273, 566, 615, 649
Eco81I	CCTNAGG	1 cut(s)	525
EcoICRI	GAGCTC	1 cut(s)	202
EcoO109I	RGGNCCY	2 cut(s)	319, 760
EcoRII	CCWGG	5 cut(s)	390, 703, 861, 1050, 1312
EcoT38I	GRGCYC	1 cut(s)	204
EgeI	GGCGCC	1 cut(s)	672
EheI	GGCGCC	1 cut(s)	672
FaeI	CATG	1 cut(s)	790
FaqI	GGGAC	6 cut(s)	528, 611, 848, 1302, 1441, 1487
FatI	CATG	1 cut(s)	786
FbaI	TGATCA	1 cut(s)	781
FblI	GTMKAC	3 cut(s)	51, 182, 728
Fnu4HI	GCNGC	6 cut(s)	21, 24, 27, 98, 213, 751
FokI	GGATG	3 cut(s)	152, 736, 812
FriOI	GRGCYC	1 cut(s)	204
Fsp4HI	GCNGC	6 cut(s)	21, 24, 27, 98, 213, 751
GlaI	GCGC	4 cut(s)	87, 271, 672, 1102
GluI	GCNGC	6 cut(s)	21, 24, 27, 98, 213, 751
GsaI	CCCAGC	2 cut(s)	127, 743
HaeII	RGCGCY	2 cut(s)	273, 674
HaeIII	GGCC	5 cut(s)	5, 128, 281, 449, 498
HapII	CCGG	9 cut(s)	101, 149, 158, 197, 282, 332, 462, 1298, 1321
HgaI	GACGC	1 cut(s)	49
HhaI	GCGC	4 cut(s)	88, 272, 673, 1103
Hin1I	GRCGYC	2 cut(s)	41, 671
Hin1II	CATG	1 cut(s)	790
Hin6I	GCGC	4 cut(s)	86, 270, 671, 1101
HinP1I	GCGC	4 cut(s)	86, 270, 671, 1101
HincII	GTYRAC	3 cut(s)	52, 729, 1273
HindII	GTYRAC	3 cut(s)	52, 729, 1273
HinfI	GANTC	7 cut(s)	71, 257, 325, 418, 815, 897, 1408
HpaI	GTTAAC	1 cut(s)	1273
HpaII	CCGG	9 cut(s)	101, 149, 158, 197, 282, 332, 462, 1298, 1321
HphI	GGTGA	3 cut(s)	70, 391, 1302
Hpy166II	GTNNAC	7 cut(s)	52, 183, 297, 729, 997, 1273, 1354
Hpy188I	TCNGA	8 cut(s)	190, 567, 585, 616, 634, 1089, 1129, 1407
Hpy188III	TCNNGA	6 cut(s)	251, 373, 715, 952, 1004, 1033
Hpy8I	GTNNAC	7 cut(s)	52, 183, 297, 729, 997, 1273, 1354
Hpy99I	CGWCG	5 cut(s)	43, 134, 248, 304, 733
HpyAV	CCTTC	3 cut(s)	639, 663, 751
HpyCH4III	ACNGT	3 cut(s)	1001, 1277, 1432
HpyCH4IV	ACGT	2 cut(s)	299, 928
HpyCH4V	TGCA	4 cut(s)	537, 650, 1360, 1479
HpyF10VI	GCNNNNNNNGC	9 cut(s)	26, 94, 106, 154, 278, 490, 527, 858, 1148
HpyF3I	CTNAG	5 cut(s)	228, 444, 525, 795, 1013
HpySE526I	ACGT	2 cut(s)	299, 928
Hsp92I	GRCGYC	2 cut(s)	41, 671
Hsp92II	CATG	1 cut(s)	790
HspAI	GCGC	4 cut(s)	86, 270, 671, 1101
KasI	GGCGCC	1 cut(s)	670
KroI	GCCGGC	2 cut(s)	100, 281
KroNI	GCCGGC	2 cut(s)	102, 283
Ksp22I	TGATCA	1 cut(s)	781
KspAI	GTTAAC	1 cut(s)	1273
Kzo9I	GATC	8 cut(s)	142, 222, 247, 396, 433, 505, 781, 1291
LguI	GCTCTTC	1 cut(s)	954
LmnI	GCTCC	4 cut(s)	154, 178, 199, 526
MabI	ACCWGGT	1 cut(s)	1312
MaeII	ACGT	2 cut(s)	299, 928
MaeIII	GTNAC	7 cut(s)	76, 274, 676, 898, 932, 1144, 1323
MalI	GATC	8 cut(s)	144, 224, 249, 398, 435, 507, 783, 1293
MboI	GATC	8 cut(s)	142, 222, 247, 396, 433, 505, 781, 1291
MboII	GAAGA	8 cut(s)	51, 146, 266, 478, 572, 860, 971, 1286
MflI	RGATCY	1 cut(s)	433
MhlI	GDGCHC	3 cut(s)	204, 345, 1165
MluCI	AATT	6 cut(s)	687, 904, 1041, 1061, 1285, 1365
Mly113I	GGCGCC	1 cut(s)	671
MlyI	GAGTC	4 cut(s)	65, 251, 412, 906
MreI	CGCCGGCG	1 cut(s)	100
MroNI	GCCGGC	2 cut(s)	100, 281
MroXI	GAANNNNTTC	1 cut(s)	236
MseI	TTAA	8 cut(s)	117, 218, 821, 888, 981, 1203, 1214, 1272
MspCI	CTTAAG	1 cut(s)	820
MspI	CCGG	9 cut(s)	101, 149, 158, 197, 282, 332, 462, 1298, 1321
MspR9I	CCNGG	7 cut(s)	392, 463, 705, 863, 1052, 1314, 1321
Mva1269I	GAATGC	1 cut(s)	652
MvaI	CCWGG	5 cut(s)	392, 705, 863, 1052, 1314
MvnI	CGCG	1 cut(s)	753
MwoI	GCNNNNNNNGC	9 cut(s)	26, 94, 106, 154, 278, 490, 527, 858, 1148
NaeI	GCCGGC	2 cut(s)	102, 283
NarI	GGCGCC	1 cut(s)	671
NciI	CCSGG	2 cut(s)	463, 1321
NdeII	GATC	8 cut(s)	142, 222, 247, 396, 433, 505, 781, 1291
NgoMIV	GCCGGC	2 cut(s)	100, 281
NlaIII	CATG	1 cut(s)	790
NlaIV	GGNNCC	5 cut(s)	156, 460, 672, 1162, 1318
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	3 cut(s)	76, 898, 1323
NspI	RCATGY	1 cut(s)	790
PciSI	GCTCTTC	1 cut(s)	954
PcsI	WCGNNNNNNNCGW	1 cut(s)	296
PctI	GAATGC	1 cut(s)	652
PdiI	GCCGGC	2 cut(s)	102, 283
PdmI	GAANNNNTTC	1 cut(s)	236
PfeI	GAWTC	3 cut(s)	325, 815, 1408
Pfl23II	CGTACG	1 cut(s)	1423
PflFI	GACNNNGTC	1 cut(s)	74
PflMI	CCANNNNNTGG	1 cut(s)	1470
PfoI	TCCNGGA	1 cut(s)	461
PkrI	GCNGC	6 cut(s)	22, 25, 28, 99, 214, 752
PleI	GAGTC	4 cut(s)	65, 251, 412, 905
PluTI	GGCGCC	1 cut(s)	674
PpsI	GAGTC	4 cut(s)	65, 251, 412, 905
PpuMI	RGGWCCY	2 cut(s)	319, 760
Psp124BI	GAGCTC	1 cut(s)	204
Psp5II	RGGWCCY	2 cut(s)	319, 760
Psp6I	CCWGG	5 cut(s)	390, 703, 861, 1050, 1312
PspFI	CCCAGC	2 cut(s)	123, 739
PspGI	CCWGG	5 cut(s)	390, 703, 861, 1050, 1312
PspLI	CGTACG	1 cut(s)	1423
PspN4I	GGNNCC	5 cut(s)	156, 460, 672, 1162, 1318
PspPI	GGNCC	5 cut(s)	126, 319, 448, 760, 1316
PspPPI	RGGWCCY	2 cut(s)	319, 760
PsrI	GAACNNNNNNTAC	4 cut(s)	691, 723, 1416, 1448
PsuI	RGATCY	1 cut(s)	433
PsyI	GACNNNGTC	1 cut(s)	74
RsaI	GTAC	9 cut(s)	296, 310, 428, 709, 989, 998, 1242, 1355, 1425
RsaNI	GTAC	9 cut(s)	295, 309, 427, 708, 988, 997, 1241, 1354, 1424
SacI	GAGCTC	1 cut(s)	204
SalI	GTCGAC	2 cut(s)	50, 727
SapI	GCTCTTC	1 cut(s)	954
SaqAI	TTAA	8 cut(s)	117, 218, 821, 888, 981, 1203, 1214, 1272
SatI	GCNGC	6 cut(s)	21, 24, 27, 98, 213, 751
Sau3AI	GATC	8 cut(s)	142, 222, 247, 396, 433, 505, 781, 1291
Sau96I	GGNCC	5 cut(s)	126, 319, 448, 760, 1316
ScaI	AGTACT	1 cut(s)	310
SchI	GAGTC	4 cut(s)	65, 251, 412, 906
ScrFI	CCNGG	7 cut(s)	392, 463, 705, 863, 1052, 1314, 1321
SduI	GDGCHC	3 cut(s)	204, 345, 1165
SexAI	ACCWGGT	1 cut(s)	1312
SfcI	CTRYAG	1 cut(s)	1332
SfoI	GGCGCC	1 cut(s)	672
SgrAI	CRCCGGYG	1 cut(s)	100
SinI	GGWCC	3 cut(s)	319, 760, 1316
SmlI	CTYRAG	3 cut(s)	344, 820, 913
SmoI	CTYRAG	3 cut(s)	344, 820, 913
Sse9I	AATT	6 cut(s)	687, 904, 1041, 1061, 1285, 1365
SsiI	CCGC	9 cut(s)	21, 24, 27, 95, 98, 146, 213, 338, 751
SspDI	GGCGCC	1 cut(s)	670
SspI	AATATT	1 cut(s)	1307
SstI	GAGCTC	1 cut(s)	204
StyD4I	CCNGG	7 cut(s)	390, 461, 703, 861, 1050, 1312, 1319
TaaI	ACNGT	3 cut(s)	1001, 1277, 1432
TaiI	ACGT	2 cut(s)	302, 931
TaqI	TCGA	6 cut(s)	51, 204, 243, 315, 728, 771
TasI	AATT	6 cut(s)	687, 904, 1041, 1061, 1285, 1365
TatI	WGTACW	4 cut(s)	308, 987, 996, 1240
TauI	GCSGC	6 cut(s)	23, 26, 29, 100, 215, 753
TfiI	GAWTC	3 cut(s)	325, 815, 1408
Tru1I	TTAA	8 cut(s)	117, 218, 821, 888, 981, 1203, 1214, 1272
Tru9I	TTAA	8 cut(s)	117, 218, 821, 888, 981, 1203, 1214, 1272
TscAI	CASTG	4 cut(s)	22, 88, 232, 607
TseFI	GTSAC	3 cut(s)	76, 898, 1323
Tsp45I	GTSAC	3 cut(s)	76, 898, 1323
TspDTI	ATGAA	2 cut(s)	906, 1023
TspGWI	ACGGA	3 cut(s)	168, 414, 1441
TspRI	CASTG	4 cut(s)	22, 88, 232, 607
Tth111I	GACNNNGTC	1 cut(s)	74
Van91I	CCANNNNNTGG	1 cut(s)	1470
Vha464I	CTTAAG	1 cut(s)	820
VpaK11BI	GGWCC	3 cut(s)	319, 760, 1316
XapI	RAATTY	2 cut(s)	904, 1041
XceI	RCATGY	1 cut(s)	790
XcmI	CCANNNNNNNNNTGG	1 cut(s)	553
XmiI	GTMKAC	3 cut(s)	51, 182, 728
XmnI	GAANNNNTTC	1 cut(s)	236
ZrmI	AGTACT	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.