Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001022

Physical Location & Seq

Genomic Coordinates Reverse (-)

15420694 .. 15421430

Gene Structure 737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG166700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCCGAGAAAAATCAAAACGACGCAGTATCTACACCTCCGTCCTCTTTGGATCTCGAGCTTAACATCGCCGGCTTGAATATCGGCGACCACAAATCGTCAATTTGCCAAGCTGAGCTCCAAATCGCCGGCGAGAACAAATTCCTGGACGAACGTGAAGACTCGAATATCAGCGCTGTTACAAACGGCAACAAGCCGTACACGTCGGCGAGTAATTTCGAGGATCTGCATTTATCAGAGGAGTTGTTGAAGGGTTTGTATGTGGAGATGGGGTTCAAGAAGCCGAGTAAAATCCAGGCAATTACATTGCCTATGATTTTGACGACTCCATACAAAGACTTGGTTGCTCAGGCTCACAATGGCTCAGGGAAGACTACTTGTTTCGTGCTCGGGATGCTCAGCCGTGTCGATCAGAATGTGAAAGCTCCTCAGGCTCTCTGCATTTGTCCCACCAGAGAATTGGCACTTCAGAATGTGGCAGAATGGGGAGGTTATTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005730 GO:0005737 GO:0005886 GO:0006139 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008026 GO:0008104 GO:0008150 GO:0008152 GO:0008186 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010467 GO:0010501 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0016973 GO:0017111 GO:0031503 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0033036 GO:0033993 GO:0034613 GO:0034641 GO:0042221 GO:0042623 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070013 GO:0070035 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0090304 GO:0097305 GO:0140098 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

166

Amino Acids

18.03

Weight (kDa)

5.03

Isoelectric Point (pI)

33.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	97 - 162	6.9e-15	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53110
fragaria_vesca	FvH4_6g17230 FvH4_6g17230 FvH4_6g17230 FvH4_6g17280 FvH4_6g17280
malus_domestica	MD12G1102600.v1.1 MD14G1096800.v1.1
prunus_persica	Prupe.3G009100_v2.0.a1 Prupe.7G122600_v2.0.a1
pyrus_communis	pycom03g08760 pycom12g10060 pycom14g09450
rosa_chinensis	RchiOBHm_Chr3g0471311 RchiOBHm_Chr3g0471321 RchiOBHm_Chr3g0471361 RchiOBHm_Chr3g0471391
rosa_laevigata	RLG00000024181 RLG00000024187 RLG00000024188
rosa_multiflora	Rmu_sc0006582.1_g000015 Rmu_sc0006582.1_g000018 Rmu_sc0009082.1_g000003 Rmu_sc0010513.1_g000003 Rmu_sc0015755.1_g000002 Rmu_sc0030425.1_g000001
rosa_roxburghii	Rroxscaffold_6G00409980 Rroxscaffold_6G00410000 Rroxscaffold_6G00410060 Rroxscaffold_6G00410080
rosa_rugosa	Rorug03G0117100 Rorug03G0117100 Rorug03G0117100 Rorug03G0117400 Rorug03G0117500 Rorug03G0117500
rosa_samantha	Rh3AG166500 Rh3AG166600 Rh3AG166700 Rh3AG167100 Rh3BG191900 Rh3BG192000 Rh3BG192100 Rh3BG192400 Rh3BG192500 Rh3BG192800 Rh3CG182200 Rh3CG182300 Rh3CG182400 Rh3CG182700 Rh3CG182800 Rh3CG183200 Rh3DG182700 Rh3DG183100 Rh3DG183200 Rh3DG183700 Rh3DG183800
rosa_wichuraiana	Rw3G015670 Rw3G015680 Rw3G015730 Rw3G015760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	60, 231
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	140
AcuI	CTGAAG	1 cut(s)	452
AfaI	GTAC	1 cut(s)	200
AfeI	AGCGCT	1 cut(s)	175
AflIII	ACRYGT	1 cut(s)	201
AgsI	TTSAA	3 cut(s)	79, 250, 277
AjiI	CACGTC	1 cut(s)	204
AjnI	CCWGG	2 cut(s)	144, 294
AloI	GAACNNNNNNTCC	2 cut(s)	257, 289
AluBI	AGCT	4 cut(s)	61, 113, 118, 425
AluI	AGCT	4 cut(s)	61, 113, 118, 425
Alw21I	GWGCWC	2 cut(s)	120, 390
AlwI	GGATC	2 cut(s)	60, 231
Ama87I	CYCGRG	2 cut(s)	56, 389
Aor51HI	AGCGCT	1 cut(s)	175
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	1 cut(s)	140
Asp700I	GAANNNNTTC	1 cut(s)	140
AspLEI	GCGC	1 cut(s)	176
AvaI	CYCGRG	2 cut(s)	56, 389
AxyI	CCTNAGG	1 cut(s)	429
BanII	GRGCYC	1 cut(s)	120
BbsI	GAAGAC	2 cut(s)	165, 377
Bbv12I	GWGCWC	2 cut(s)	120, 390
BccI	CCATC	1 cut(s)	262
BceAI	ACGGC	3 cut(s)	181, 202, 387
BciT130I	CCWGG	2 cut(s)	146, 296
BfoI	RGCGCY	1 cut(s)	177
BlpI	GCTNAGC	2 cut(s)	114, 398
Bme1390I	CCNGG	2 cut(s)	146, 296
BmeT110I	CYCGRG	2 cut(s)	56, 389
BmgBI	CACGTC	1 cut(s)	204
BmrFI	CCNGG	2 cut(s)	146, 296
BmsI	GCATC	1 cut(s)	384
BpiI	GAAGAC	2 cut(s)	165, 377
Bpu10I	CCTNAGC	2 cut(s)	348, 364
Bpu1102I	GCTNAGC	2 cut(s)	114, 398
BsaXI	ACNNNNNCTCC	2 cut(s)	257, 287
Bse118I	RCCGGY	2 cut(s)	71, 128
Bse21I	CCTNAGG	1 cut(s)	429
Bse3DI	GCAATG	1 cut(s)	305
BseBI	CCWGG	2 cut(s)	146, 296
BseGI	GGATG	1 cut(s)	399
BseMI	GCAATG	1 cut(s)	305
BseMII	CTCAG	5 cut(s)	105, 362, 378, 412, 443
BseRI	GAGGAG	2 cut(s)	254, 417
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	2 cut(s)	120, 390
BsiHKCI	CYCGRG	2 cut(s)	56, 389
BsiSI	CCGG	2 cut(s)	72, 129
BslFI	GGGAC	1 cut(s)	432
BsmFI	GGGAC	1 cut(s)	432
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	2 cut(s)	56, 389
Bsp1286I	GDGCHC	2 cut(s)	120, 390
Bsp143I	GATC	3 cut(s)	52, 223, 409
Bsp1720I	GCTNAGC	2 cut(s)	114, 398
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	5 cut(s)	106, 361, 377, 411, 442
BspPI	GGATC	2 cut(s)	60, 231
BsrDI	GCAATG	1 cut(s)	305
BsrFI	RCCGGY	2 cut(s)	71, 128
BssAI	RCCGGY	2 cut(s)	71, 128
BssMI	GATC	3 cut(s)	52, 223, 409
Bst2UI	CCWGG	2 cut(s)	146, 296
BstC8I	GCNNGC	2 cut(s)	73, 130
BstDEI	CTNAG	5 cut(s)	114, 348, 364, 398, 429
BstF5I	GGATG	1 cut(s)	399
BstH2I	RGCGCY	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	176
BstKTI	GATC	3 cut(s)	55, 226, 412
BstMBI	GATC	3 cut(s)	52, 223, 409
BstMWI	GCNNNNNNNGC	2 cut(s)	394, 431
BstNI	CCWGG	2 cut(s)	146, 296
BstSCI	CCNGG	2 cut(s)	144, 294
BstV2I	GAAGAC	2 cut(s)	165, 377
BstX2I	RGATCY	2 cut(s)	52, 223
BstXI	CCANNNNNNTGG	1 cut(s)	460
BstYI	RGATCY	2 cut(s)	52, 223
Bsu36I	CCTNAGG	1 cut(s)	429
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	52
BtrI	CACGTC	1 cut(s)	204
BtsCI	GGATG	1 cut(s)	399
Cac8I	GCNNGC	2 cut(s)	73, 130
CfoI	GCGC	1 cut(s)	176
Cfr10I	RCCGGY	2 cut(s)	71, 128
CseI	GACGC	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	199
CviQI	GTAC	1 cut(s)	199
DdeI	CTNAG	5 cut(s)	114, 348, 364, 398, 429
DpnI	GATC	3 cut(s)	54, 225, 411
DpnII	GATC	3 cut(s)	52, 223, 409
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	118
Eco24I	GRGCYC	1 cut(s)	120
Eco47III	AGCGCT	1 cut(s)	175
Eco53kI	GAGCTC	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	452
Eco81I	CCTNAGG	1 cut(s)	429
Eco88I	CYCGRG	2 cut(s)	56, 389
EcoICRI	GAGCTC	1 cut(s)	118
EcoRII	CCWGG	2 cut(s)	144, 294
EcoT38I	GRGCYC	1 cut(s)	120
FaiI	YATR	3 cut(s)	261, 314, 331
FaqI	GGGAC	1 cut(s)	432
FokI	GGATG	1 cut(s)	406
FriOI	GRGCYC	1 cut(s)	120
GlaI	GCGC	1 cut(s)	175
HaeII	RGCGCY	1 cut(s)	177
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	72, 129
HgaI	GACGC	1 cut(s)	32
HhaI	GCGC	1 cut(s)	176
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HinfI	GANTC	2 cut(s)	161, 325
HpaII	CCGG	2 cut(s)	72, 129
Hpy166II	GTNNAC	1 cut(s)	201
Hpy188I	TCNGA	3 cut(s)	238, 414, 471
Hpy188III	TCNNGA	3 cut(s)	56, 277, 391
Hpy8I	GTNNAC	1 cut(s)	201
Hpy99I	CGWCG	2 cut(s)	26, 208
HpyAV	CCTTC	1 cut(s)	244
HpyCH4IV	ACGT	2 cut(s)	154, 203
HpyCH4V	TGCA	2 cut(s)	229, 441
HpyF10VI	GCNNNNNNNGC	2 cut(s)	394, 431
HpyF3I	CTNAG	5 cut(s)	114, 348, 364, 398, 429
HpySE526I	ACGT	2 cut(s)	154, 203
HspAI	GCGC	1 cut(s)	174
KroI	GCCGGC	2 cut(s)	71, 128
KroNI	GCCGGC	2 cut(s)	73, 130
Kzo9I	GATC	3 cut(s)	52, 223, 409
LmnI	GCTCC	2 cut(s)	123, 430
LweI	GCATC	1 cut(s)	384
MaeII	ACGT	2 cut(s)	154, 203
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	3 cut(s)	54, 225, 411
MboI	GATC	3 cut(s)	52, 223, 409
MboII	GAAGA	2 cut(s)	170, 382
MflI	RGATCY	2 cut(s)	52, 223
MhlI	GDGCHC	2 cut(s)	120, 390
MluCI	AATT	5 cut(s)	102, 140, 214, 300, 458
MlyI	GAGTC	2 cut(s)	155, 319
MnlI	CCTC	6 cut(s)	48, 55, 214, 232, 438, 482
MreI	CGCCGGCG	1 cut(s)	128
MroNI	GCCGGC	2 cut(s)	71, 128
MroXI	GAANNNNTTC	1 cut(s)	140
MseI	TTAA	1 cut(s)	63
MspI	CCGG	2 cut(s)	72, 129
MspR9I	CCNGG	2 cut(s)	146, 296
MvaI	CCWGG	2 cut(s)	146, 296
MwoI	GCNNNNNNNGC	2 cut(s)	394, 431
NaeI	GCCGGC	2 cut(s)	73, 130
NdeII	GATC	3 cut(s)	52, 223, 409
NgoMIV	GCCGGC	2 cut(s)	71, 128
NmeAIII	GCCGAG	2 cut(s)	31, 309
PaeR7I	CTCGAG	1 cut(s)	56
PdiI	GCCGGC	2 cut(s)	73, 130
PdmI	GAANNNNTTC	1 cut(s)	140
PfoI	TCCNGGA	1 cut(s)	144
PleI	GAGTC	2 cut(s)	155, 319
PpsI	GAGTC	2 cut(s)	155, 319
Psp124BI	GAGCTC	1 cut(s)	120
Psp6I	CCWGG	2 cut(s)	144, 294
PspGI	CCWGG	2 cut(s)	144, 294
PsuI	RGATCY	2 cut(s)	52, 223
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
SacI	GAGCTC	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	63
Sau3AI	GATC	3 cut(s)	52, 223, 409
SchI	GAGTC	2 cut(s)	155, 319
ScrFI	CCNGG	2 cut(s)	146, 296
SduI	GDGCHC	2 cut(s)	120, 390
SetI	ASST	8 cut(s)	40, 63, 115, 120, 157, 206, 427, 493
SfaNI	GCATC	1 cut(s)	384
Sfr274I	CTCGAG	1 cut(s)	56
SgrAI	CRCCGGYG	1 cut(s)	128
SlaI	CTCGAG	1 cut(s)	56
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	5 cut(s)	102, 140, 214, 300, 458
SstI	GAGCTC	1 cut(s)	120
StyD4I	CCNGG	2 cut(s)	144, 294
TaiI	ACGT	2 cut(s)	157, 206
TaqI	TCGA	4 cut(s)	57, 164, 219, 408
TasI	AATT	5 cut(s)	102, 140, 214, 300, 458
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TspGWI	ACGGA	1 cut(s)	30
XapI	RAATTY	1 cut(s)	140
XcmI	CCANNNNNNNNNTGG	1 cut(s)	457
XhoI	CTCGAG	1 cut(s)	56
XmnI	GAANNNNTTC	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.