Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030425.1

Orthogroup ID

OG0001022

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1946

Gene Structure 1946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030425.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 608 bp

atgaaagattataatcaactatgtttaaagaaagaagagctgtctttggaagctgtgaagcagtacaaggtctactgccctgatgagctgagcaaaattgatgtgatcaaaaacaaaatatttgatctaggagattacattggacagagaataatatttgtaaggtcgagaactagtgcaaaaatgttgcatgatgaacttgttggagatggttattcggttactaccatacatggcgccctcagtgttgaagagagagacaaaatagtcaaagagttcaaagatggtttaaccaaagttctcatatcaactgatctcctcgctcgaggctttgatcaacagcaggttaattgtgttgtcaattatgatcttccaatcaagcgtggtgcttcttcaagcacacgggatcgtccagagcctgattatgagctttacttacatagatgtggccgggcaggtcgttttgggagcaagggatctgtgttcaacttgctttgccttgatacggataagctggtcatgacaaaaattgagcgctactataacatccaagtaccagaggttaagatcagtgaacgggcttttcaaggggctctaagagctgcggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005730 GO:0005737 GO:0005886 GO:0006139 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008026 GO:0008104 GO:0008150 GO:0008152 GO:0008186 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010467 GO:0010501 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0016973 GO:0017111 GO:0031503 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0033036 GO:0033993 GO:0034613 GO:0034641 GO:0042221 GO:0042623 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070013 GO:0070035 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0090304 GO:0097305 GO:0140098 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

203

Amino Acids

23.09

Weight (kDa)

8.49

Isoelectric Point (pI)

27.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53110
fragaria_vesca	FvH4_6g17230 FvH4_6g17230 FvH4_6g17230 FvH4_6g17280 FvH4_6g17280
malus_domestica	MD12G1102600.v1.1 MD14G1096800.v1.1
prunus_persica	Prupe.3G009100_v2.0.a1 Prupe.7G122600_v2.0.a1
pyrus_communis	pycom03g08760 pycom12g10060 pycom14g09450
rosa_chinensis	RchiOBHm_Chr3g0471311 RchiOBHm_Chr3g0471321 RchiOBHm_Chr3g0471361 RchiOBHm_Chr3g0471391
rosa_laevigata	RLG00000024181 RLG00000024187 RLG00000024188
rosa_multiflora	Rmu_sc0006582.1_g000015 Rmu_sc0006582.1_g000018 Rmu_sc0009082.1_g000003 Rmu_sc0010513.1_g000003 Rmu_sc0015755.1_g000002 Rmu_sc0030425.1_g000001
rosa_roxburghii	Rroxscaffold_6G00409980 Rroxscaffold_6G00410000 Rroxscaffold_6G00410060 Rroxscaffold_6G00410080
rosa_rugosa	Rorug03G0117100 Rorug03G0117100 Rorug03G0117100 Rorug03G0117400 Rorug03G0117500 Rorug03G0117500
rosa_samantha	Rh3AG166500 Rh3AG166600 Rh3AG166700 Rh3AG167100 Rh3BG191900 Rh3BG192000 Rh3BG192100 Rh3BG192400 Rh3BG192500 Rh3BG192800 Rh3CG182200 Rh3CG182300 Rh3CG182400 Rh3CG182700 Rh3CG182800 Rh3CG183200 Rh3DG182700 Rh3DG183100 Rh3DG183200 Rh3DG183700 Rh3DG183800
rosa_wichuraiana	Rw3G015670 Rw3G015680 Rw3G015730 Rw3G015760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	12
AasI	GACNNNNNNGTC	1 cut(s)	266
Acc36I	ACCTGC	2 cut(s)	334, 446
AccB1I	GGYRCC	1 cut(s)	236
AccI	GTMKAC	1 cut(s)	72
AciI	CCGC	1 cut(s)	605
AclWI	GGATC	2 cut(s)	414, 484
AcoI	YGGCCR	1 cut(s)	448
AcyI	GRCGYC	1 cut(s)	237
AfaI	GTAC	2 cut(s)	65, 555
AfeI	AGCGCT	1 cut(s)	536
AfiI	CCNNNNNNNGG	1 cut(s)	505
AgsI	TTSAA	5 cut(s)	251, 280, 396, 487, 587
AhlI	ACTAGT	1 cut(s)	173
AluBI	AGCT	6 cut(s)	40, 53, 88, 430, 514, 602
AluI	AGCT	6 cut(s)	40, 53, 88, 430, 514, 602
Alw26I	GTCTC	1 cut(s)	252
AlwI	GGATC	2 cut(s)	414, 484
AlwNI	CAGNNNCTG	1 cut(s)	419
Ama87I	CYCGRG	1 cut(s)	324
Aor51HI	AGCGCT	1 cut(s)	536
AoxI	GGCC	1 cut(s)	448
ApeKI	GCWGC	1 cut(s)	602
AspLEI	GCGC	2 cut(s)	239, 537
AsuC2I	CCSGG	1 cut(s)	452
AvaI	CYCGRG	1 cut(s)	324
BanI	GGYRCC	1 cut(s)	236
BanII	GRGCYC	1 cut(s)	595
BbvI	GCAGC	1 cut(s)	589
BccI	CCATC	2 cut(s)	203, 278
BclI	TGATCA	2 cut(s)	105, 334
BcnI	CCSGG	1 cut(s)	452
BcoDI	GTCTC	1 cut(s)	252
BcuI	ACTAGT	1 cut(s)	173
BfaI	CTAG	2 cut(s)	128, 174
BfoI	RGCGCY	2 cut(s)	240, 538
BfuAI	ACCTGC	2 cut(s)	334, 446
BisI	GCNGC	1 cut(s)	603
BlpI	GCTNAGC	1 cut(s)	89
BlsI	GCNGC	1 cut(s)	604
Bme1390I	CCNGG	1 cut(s)	452
BmeT110I	CYCGRG	1 cut(s)	324
BmiI	GGNNCC	1 cut(s)	238
BmrFI	CCNGG	1 cut(s)	452
Bpu1102I	GCTNAGC	1 cut(s)	89
BpuMI	CCSGG	1 cut(s)	452
BsaBI	GATNNNNATC	1 cut(s)	12
BsaHI	GRCGYC	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	1 cut(s)	505
Bse8I	GATNNNNATC	1 cut(s)	12
BseGI	GGATG	1 cut(s)	546
BseJI	GATNNNNATC	1 cut(s)	12
BseLI	CCNNNNNNNGG	1 cut(s)	505
BseMII	CTCAG	2 cut(s)	80, 256
BseRI	GAGGAG	1 cut(s)	308
BseXI	GCAGC	1 cut(s)	589
BshFI	GGCC	1 cut(s)	450
BshNI	GGYRCC	1 cut(s)	236
BsiHKCI	CYCGRG	1 cut(s)	324
BsiSI	CCGG	1 cut(s)	451
BslI	CCNNNNNNNGG	1 cut(s)	505
BsmAI	GTCTC	1 cut(s)	252
BsnI	GGCC	1 cut(s)	450
BsoBI	CYCGRG	1 cut(s)	324
Bsp1286I	GDGCHC	1 cut(s)	595
Bsp143I	GATC	8 cut(s)	105, 124, 313, 334, 367, 406, 476, 567
Bsp1720I	GCTNAGC	1 cut(s)	89
BspACI	CCGC	1 cut(s)	605
BspANI	GGCC	1 cut(s)	450
BspCNI	CTCAG	2 cut(s)	81, 255
BspHI	TCATGA	1 cut(s)	519
BspLI	GGNNCC	1 cut(s)	238
BspMI	ACCTGC	2 cut(s)	334, 446
BspPI	GGATC	2 cut(s)	414, 484
BspQI	GCTCTTC	1 cut(s)	30
BspT107I	GGYRCC	1 cut(s)	236
BssMI	GATC	8 cut(s)	105, 124, 313, 334, 367, 406, 476, 567
BssNI	GRCGYC	1 cut(s)	237
Bst6I	CTCTTC	2 cut(s)	30, 246
BstACI	GRCGYC	1 cut(s)	237
BstDEI	CTNAG	3 cut(s)	89, 242, 596
BstF5I	GGATG	1 cut(s)	546
BstH2I	RGCGCY	2 cut(s)	240, 538
BstHHI	GCGC	2 cut(s)	239, 537
BstKTI	GATC	8 cut(s)	108, 127, 316, 337, 370, 409, 479, 570
BstMAI	GTCTC	1 cut(s)	252
BstMBI	GATC	8 cut(s)	105, 124, 313, 334, 367, 406, 476, 567
BstMWI	GCNNNNNNNGC	1 cut(s)	599
BstSCI	CCNGG	1 cut(s)	450
BstV1I	GCAGC	1 cut(s)	589
BstX2I	RGATCY	1 cut(s)	476
BstYI	RGATCY	1 cut(s)	476
BsuRI	GGCC	1 cut(s)	450
BtsCI	GGATG	1 cut(s)	546
BtsIMutI	CAGTG	2 cut(s)	250, 577
BveI	ACCTGC	2 cut(s)	334, 446
CaiI	CAGNNNCTG	1 cut(s)	419
CciI	TCATGA	1 cut(s)	519
CfoI	GCGC	2 cut(s)	239, 537
Csp6I	GTAC	2 cut(s)	64, 554
CviAII	CATG	3 cut(s)	191, 233, 520
CviQI	GTAC	2 cut(s)	64, 554
DdeI	CTNAG	3 cut(s)	89, 242, 596
DinI	GGCGCC	1 cut(s)	238
DpnI	GATC	8 cut(s)	107, 126, 315, 336, 369, 408, 478, 569
DpnII	GATC	8 cut(s)	105, 124, 313, 334, 367, 406, 476, 567
DraI	TTTAAA	1 cut(s)	27
DrdI	GACNNNNNNGTC	1 cut(s)	266
DseDI	GACNNNNNNGTC	1 cut(s)	266
EaeI	YGGCCR	1 cut(s)	448
Eam1104I	CTCTTC	2 cut(s)	30, 246
EarI	CTCTTC	2 cut(s)	30, 246
Eco24I	GRGCYC	1 cut(s)	595
Eco47III	AGCGCT	1 cut(s)	536
Eco88I	CYCGRG	1 cut(s)	324
EcoT38I	GRGCYC	1 cut(s)	595
EgeI	GGCGCC	1 cut(s)	238
EheI	GGCGCC	1 cut(s)	238
FaeI	CATG	3 cut(s)	194, 236, 523
FatI	CATG	3 cut(s)	190, 232, 519
FauI	CCCGC	1 cut(s)	598
FbaI	TGATCA	2 cut(s)	105, 334
FblI	GTMKAC	1 cut(s)	72
Fnu4HI	GCNGC	1 cut(s)	603
FokI	GGATG	1 cut(s)	533
FriOI	GRGCYC	1 cut(s)	595
Fsp4HI	GCNGC	1 cut(s)	603
FspBI	CTAG	2 cut(s)	128, 174
GlaI	GCGC	2 cut(s)	238, 536
GluI	GCNGC	1 cut(s)	603
HaeII	RGCGCY	2 cut(s)	240, 538
HaeIII	GGCC	1 cut(s)	450
HapII	CCGG	1 cut(s)	451
HhaI	GCGC	2 cut(s)	239, 537
Hin1I	GRCGYC	1 cut(s)	237
Hin1II	CATG	3 cut(s)	194, 236, 523
Hin6I	GCGC	2 cut(s)	237, 535
HinP1I	GCGC	2 cut(s)	237, 535
HpaII	CCGG	1 cut(s)	451
Hpy166II	GTNNAC	2 cut(s)	73, 575
Hpy188III	TCNNGA	3 cut(s)	168, 413, 520
Hpy8I	GTNNAC	2 cut(s)	73, 575
HpyCH4V	TGCA	2 cut(s)	179, 190
HpyF10VI	GCNNNNNNNGC	1 cut(s)	599
HpyF3I	CTNAG	3 cut(s)	89, 242, 596
Hsp92I	GRCGYC	1 cut(s)	237
Hsp92II	CATG	3 cut(s)	194, 236, 523
HspAI	GCGC	2 cut(s)	237, 535
KasI	GGCGCC	1 cut(s)	236
Ksp22I	TGATCA	2 cut(s)	105, 334
Kzo9I	GATC	8 cut(s)	105, 124, 313, 334, 367, 406, 476, 567
LguI	GCTCTTC	1 cut(s)	30
LmnI	GCTCC	1 cut(s)	468
LpnPI	CCDG	8 cut(s)	93, 329, 426, 432, 441, 464, 500, 570
Lsp1109I	GCAGC	1 cut(s)	589
MaeI	CTAG	2 cut(s)	128, 174
MaeIII	GTNAC	1 cut(s)	220
MalI	GATC	8 cut(s)	107, 126, 315, 336, 369, 408, 478, 569
MboI	GATC	8 cut(s)	105, 124, 313, 334, 367, 406, 476, 567
MboII	GAAGA	4 cut(s)	47, 263, 362, 384
MflI	RGATCY	1 cut(s)	476
MhlI	GDGCHC	1 cut(s)	595
MluCI	AATT	4 cut(s)	96, 349, 361, 528
Mly113I	GGCGCC	1 cut(s)	237
MmeI	TCCRAC	1 cut(s)	184
MnlI	CCTC	4 cut(s)	251, 320, 329, 553
MseI	TTAA	4 cut(s)	26, 290, 348, 564
MslI	CAYNNNNRTG	1 cut(s)	444
MspI	CCGG	1 cut(s)	451
MspR9I	CCNGG	1 cut(s)	452
MwoI	GCNNNNNNNGC	1 cut(s)	599
NarI	GGCGCC	1 cut(s)	237
NciI	CCSGG	1 cut(s)	452
NdeII	GATC	8 cut(s)	105, 124, 313, 334, 367, 406, 476, 567
NlaIII	CATG	3 cut(s)	194, 236, 523
NlaIV	GGNNCC	1 cut(s)	238
PaeR7I	CTCGAG	1 cut(s)	324
PagI	TCATGA	1 cut(s)	519
PciSI	GCTCTTC	1 cut(s)	30
PkrI	GCNGC	1 cut(s)	604
PluTI	GGCGCC	1 cut(s)	240
PsiI	TTATAA	1 cut(s)	12
PspN4I	GGNNCC	1 cut(s)	238
PspXI	VCTCGAGB	1 cut(s)	324
PstNI	CAGNNNCTG	1 cut(s)	419
PsuI	RGATCY	1 cut(s)	476
RsaI	GTAC	2 cut(s)	65, 555
RsaNI	GTAC	2 cut(s)	64, 554
RseI	CAYNNNNRTG	1 cut(s)	444
SapI	GCTCTTC	1 cut(s)	30
SaqAI	TTAA	4 cut(s)	26, 290, 348, 564
SatI	GCNGC	1 cut(s)	603
Sau3AI	GATC	8 cut(s)	105, 124, 313, 334, 367, 406, 476, 567
ScrFI	CCNGG	1 cut(s)	452
SduI	GDGCHC	1 cut(s)	595
SfoI	GGCGCC	1 cut(s)	238
Sfr274I	CTCGAG	1 cut(s)	324
SlaI	CTCGAG	1 cut(s)	324
SmiMI	CAYNNNNRTG	1 cut(s)	444
SmlI	CTYRAG	1 cut(s)	324
SmoI	CTYRAG	1 cut(s)	324
SpeI	ACTAGT	1 cut(s)	173
Sse9I	AATT	4 cut(s)	96, 349, 361, 528
SsiI	CCGC	1 cut(s)	605
SspDI	GGCGCC	1 cut(s)	236
SspI	AATATT	2 cut(s)	120, 156
SspMI	CTAG	2 cut(s)	128, 174
StyD4I	CCNGG	1 cut(s)	450
TaqI	TCGA	2 cut(s)	167, 325
TasI	AATT	4 cut(s)	96, 349, 361, 528
TatI	WGTACW	1 cut(s)	63
Tru1I	TTAA	4 cut(s)	26, 290, 348, 564
Tru9I	TTAA	4 cut(s)	26, 290, 348, 564
TscAI	CASTG	2 cut(s)	250, 577
TseI	GCWGC	1 cut(s)	602
TspDTI	ATGAA	2 cut(s)	17, 210
TspGWI	ACGGA	1 cut(s)	521
TspRI	CASTG	2 cut(s)	250, 577
XhoI	CTCGAG	1 cut(s)	324
XmiI	GTMKAC	1 cut(s)	72
XspI	CTAG	2 cut(s)	128, 174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.