Prupe.4G213000_v2.0.a1

Probable zinc-ribbon domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0002425
Physical Location & Seq
Reverse (-)
13288910 .. 13293580
4671 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G213000.2

Sequence Viewer

Length: 387 bp
ATGTTGTCTGCATTGACCACTAAAGTTCGACTGGTTAGATGTCCCAAATGTCGGCAGCTTCTTCCAGAGTTGCCAGATTTTCAGGTCTACATGTGTGGTGGATGTGGTGCCACTCTCAAAGCCAGAGGATTAGATCGTTTGCCTTTGCTTGGTAATGGTTCCCATGATGGCAACAGCGACCATGACGATCAACACTACTGGAAAACTGGCTCTGATGATTCCAGCCTCGGTGACTATGACGAGCAGATTAATGTGGCAAGCGTAGTGTTTCAGGGCTCTGTTGATTCCAATCCGAGTGTGTCTCCTTTAGCTTCCATTAGTGCCCGTGTGGGCTCTGATGACTTCAATCCTCGCGTTAGCACTGACTATGACGATCGGGCACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zinc_ribbon_12

Protein Analysis

129

Amino Acids

13.88

Weight (kDa)

4.78

Isoelectric Point (pI)

27.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 107
AccI GTMKAC 1 cut(s) 87
AccII CGCG 1 cut(s) 354
AfiI CCNNNNNNNGG 2 cut(s) 51, 149
AflIII ACRYGT 1 cut(s) 90
AgsI TTSAA 1 cut(s) 346
AluBI AGCT 2 cut(s) 58, 311
AluI AGCT 2 cut(s) 58, 311
Alw26I GTCTC 1 cut(s) 306
ApeKI GCWGC 1 cut(s) 55
AseI ATTAAT 1 cut(s) 249
AsuHPI GGTGA 1 cut(s) 242
BaeGI GKGCMC 2 cut(s) 325, 382
BanI GGYRCC 1 cut(s) 107
BanII GRGCYC 2 cut(s) 278, 335
BbvI GCAGC 1 cut(s) 67
BccI CCATC 1 cut(s) 161
BcoDI GTCTC 1 cut(s) 306
BfaI CTAG 1 cut(s) 385
BisI GCNGC 1 cut(s) 56
BlsI GCNGC 1 cut(s) 57
BmiI GGNNCC 2 cut(s) 109, 160
BplI GAGNNNNNCTC 2 cut(s) 286, 318
BsaBI GATNNNNATC 1 cut(s) 288
BsaJI CCNNGG 1 cut(s) 226
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 149
Bse1I ACTGG 3 cut(s) 36, 203, 211
Bse8I GATNNNNATC 1 cut(s) 288
BseDI CCNNGG 1 cut(s) 226
BseGI GGATG 1 cut(s) 107
BseJI GATNNNNATC 1 cut(s) 288
BseLI CCNNNNNNNGG 2 cut(s) 51, 149
BseNI ACTGG 3 cut(s) 36, 203, 211
BseSI GKGCMC 2 cut(s) 325, 382
BseXI GCAGC 1 cut(s) 67
Bsh1236I CGCG 1 cut(s) 354
Bsh1285I CGRYCG 1 cut(s) 376
BshNI GGYRCC 1 cut(s) 107
BsiEI CGRYCG 1 cut(s) 376
BslFI GGGAC 1 cut(s) 27
BslI CCNNNNNNNGG 2 cut(s) 51, 149
BsmAI GTCTC 1 cut(s) 306
BsmFI GGGAC 1 cut(s) 27
Bsp1286I GDGCHC 4 cut(s) 278, 325, 335, 382
Bsp143I GATC 3 cut(s) 133, 187, 373
BspFNI CGCG 1 cut(s) 354
BspLI GGNNCC 2 cut(s) 109, 160
BspT107I GGYRCC 1 cut(s) 107
BsrI ACTGG 3 cut(s) 36, 203, 211
BssECI CCNNGG 1 cut(s) 226
BssMI GATC 3 cut(s) 133, 187, 373
BstC8I GCNNGC 1 cut(s) 259
BstF5I GGATG 1 cut(s) 107
BstFNI CGCG 1 cut(s) 354
BstKTI GATC 3 cut(s) 136, 190, 376
BstMAI GTCTC 1 cut(s) 306
BstMBI GATC 3 cut(s) 133, 187, 373
BstMCI CGRYCG 1 cut(s) 376
BstNSI RCATGY 1 cut(s) 94
BstSLI GKGCMC 2 cut(s) 325, 382
BstUI CGCG 1 cut(s) 354
BstV1I GCAGC 1 cut(s) 67
BtsCI GGATG 1 cut(s) 107
BtsIMutI CAGTG 1 cut(s) 360
Cac8I GCNNGC 1 cut(s) 259
CviAII CATG 3 cut(s) 91, 164, 182
CviJI RGCY 7 cut(s) 58, 122, 210, 225, 276, 311, 333
CviKI_1 RGCY 7 cut(s) 58, 122, 210, 225, 276, 311, 333
DpnI GATC 3 cut(s) 135, 189, 375
DpnII GATC 3 cut(s) 133, 187, 373
Eco24I GRGCYC 2 cut(s) 278, 335
EcoT38I GRGCYC 2 cut(s) 278, 335
FaeI CATG 3 cut(s) 94, 167, 185
FaiI YATR 5 cut(s) 92, 165, 183, 237, 369
FaqI GGGAC 1 cut(s) 27
FatI CATG 3 cut(s) 90, 163, 181
FblI GTMKAC 1 cut(s) 87
Fnu4HI GCNGC 1 cut(s) 56
FokI GGATG 1 cut(s) 114
FriOI GRGCYC 2 cut(s) 278, 335
Fsp4HI GCNGC 1 cut(s) 56
FspBI CTAG 1 cut(s) 385
GluI GCNGC 1 cut(s) 56
Hin1II CATG 3 cut(s) 94, 167, 185
HinfI GANTC 2 cut(s) 218, 284
HphI GGTGA 1 cut(s) 242
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 3 cut(s) 214, 294, 337
Hpy188III TCNNGA 1 cut(s) 65
Hpy8I GTNNAC 1 cut(s) 88
HpyCH4V TGCA 1 cut(s) 11
Hsp92II CATG 3 cut(s) 94, 167, 185
Kzo9I GATC 3 cut(s) 133, 187, 373
LpnPI CCDG 9 cut(s) 17, 68, 78, 87, 136, 184, 192, 235, 257
Lsp1109I GCAGC 1 cut(s) 67
MaeI CTAG 1 cut(s) 385
MaeIII GTNAC 1 cut(s) 230
MalI GATC 3 cut(s) 135, 189, 375
MboI GATC 3 cut(s) 133, 187, 373
MboII GAAGA 1 cut(s) 53
MhlI GDGCHC 4 cut(s) 278, 325, 335, 382
MnlI CCTC 3 cut(s) 119, 236, 360
MseI TTAA 1 cut(s) 249
MvnI CGCG 1 cut(s) 354
NdeII GATC 3 cut(s) 133, 187, 373
NlaIII CATG 3 cut(s) 94, 167, 185
NlaIV GGNNCC 2 cut(s) 109, 160
NmuCI GTSAC 1 cut(s) 230
NspI RCATGY 1 cut(s) 94
PciI ACATGT 1 cut(s) 90
PfeI GAWTC 2 cut(s) 218, 284
PkrI GCNGC 1 cut(s) 57
Ple19I CGATCG 1 cut(s) 376
PscI ACATGT 1 cut(s) 90
PshBI ATTAAT 1 cut(s) 249
PspN4I GGNNCC 2 cut(s) 109, 160
PvuI CGATCG 1 cut(s) 376
SaqAI TTAA 1 cut(s) 249
SatI GCNGC 1 cut(s) 56
Sau3AI GATC 3 cut(s) 133, 187, 373
SduI GDGCHC 4 cut(s) 278, 325, 335, 382
SetI ASST 3 cut(s) 60, 87, 313
SspMI CTAG 1 cut(s) 385
TaqI TCGA 1 cut(s) 28
TfiI GAWTC 2 cut(s) 218, 284
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TscAI CASTG 1 cut(s) 367
TseFI GTSAC 1 cut(s) 230
TseI GCWGC 1 cut(s) 55
Tsp45I GTSAC 1 cut(s) 230
TspRI CASTG 1 cut(s) 367
VspI ATTAAT 1 cut(s) 249
XceI RCATGY 1 cut(s) 94
XmiI GTMKAC 1 cut(s) 87
XspI CTAG 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.