Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002425

Physical Location & Seq

Genomic Coordinates Forward (+)

9456658 .. 9458625

Gene Structure 1968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001030

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGTAATCCCAGCAGCAGGATTTCTGGGATATAATCACAGCTACACGCCAAAGACTTGCAGTCATGCAGTCATCTTCTCCGACTTTCCCCATCCAAGCTTGCTTTGTTTTCTGATTTGCTCCAAACCGGAGGGTGGTGAAAGTGAGTTTAGTGATGACTATAGGCAGATGAGTGGGAGTGGGTGTCTCAGGTTCTTGATGGTCACTGCAAACCAATGCCACAAACCTATGTTCTTCCATAGCTACCAGCTTAGTTTCAGAATCAAACCCACCTCAGCTATCAATCTTCACAAGCCTAGACGGGTTTCAGATCCTAGATCCGCCAGTGGTGAAGGGTGTCCCGTATGTGTACCTGATGACAAACGAATGATTACATCGTCTGGAAATTGGAAGTGCCGTCAAGTTGCAAATAAGTTCCCAAACTGGCATTGTCCAGCACCGATTGAGTTCGAGAAGGTCGAGTTATTCGGGGCAGGCAGTCAAGTCGTAAGTGGGGTTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

168

Amino Acids

18.52

Weight (kDa)

8.6

Isoelectric Point (pI)

40.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05190
fragaria_vesca	FvH4_7g26160
malus_domestica	MD01G1169800.v1.1 MD01G1169900.v1.1 MD07G1235500.v1.1
prunus_persica	Prupe.2G265800_v2.0.a1 Prupe.2G265800_v2.0.a1 Prupe.2G265800_v2.0.a1 Prupe.4G213000_v2.0.a1 Prupe.4G213000_v2.0.a1 Prupe.4G213000_v2.0.a1 Prupe.4G213000_v2.0.a1 Prupe.4G213000_v2.0.a1
pyrus_communis	pycom01g18250 pycom01g18260 pycom07g21310
rosa_chinensis	RchiOBHm_Chr1g0372591 RchiOBHm_Chr4g0399021 RchiOBHm_Chr5g0049731 RchiOBHm_Chr7g0243711
rosa_laevigata	RLG00000001030 RLG00000008808 RLG00000010509 RLG00000026888
rosa_multiflora	Rmu_ssc0000419.1_g000010
rosa_roxburghii	Rroxscaffold_7G00208520
rosa_rugosa	Rorug01G0066000 Rorug01G0373300
rosa_samantha	Rh1AG381600 Rh1BG345000 Rh1CG358400 Rh1DG376200 Rh2BG091800 Rh3DG186100 Rh4DG129900 Rh5AG465400 Rh7AG476000
rosa_wichuraiana	Rw0G018150 Rw1G033560 Rw2G022780 Rw7G041610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	321
AclWI	GGATC	2 cut(s)	305, 312
AfaI	GTAC	1 cut(s)	351
AfiI	CCNNNNNNNGG	2 cut(s)	17, 134
AhdI	GACNNNNNGTC	1 cut(s)	60
AluBI	AGCT	5 cut(s)	42, 99, 243, 250, 278
AluI	AGCT	5 cut(s)	42, 99, 243, 250, 278
Alw26I	GTCTC	1 cut(s)	191
AlwI	GGATC	2 cut(s)	305, 312
ApeKI	GCWGC	1 cut(s)	14
AsuHPI	GGTGA	2 cut(s)	149, 341
BbvCI	CCTCAGC	1 cut(s)	274
BbvI	GCAGC	1 cut(s)	26
BccI	CCATC	2 cut(s)	99, 193
BceAI	ACGGC	1 cut(s)	381
BcgI	CGANNNNNNTGC	2 cut(s)	466, 500
BcoDI	GTCTC	1 cut(s)	191
BfaI	CTAG	2 cut(s)	297, 315
BfmI	CTRYAG	1 cut(s)	160
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
BmeRI	GACNNNNNGTC	1 cut(s)	60
BmiI	GGNNCC	1 cut(s)	498
Bpu10I	CCTNAGC	1 cut(s)	274
BsaWI	WCCGGW	1 cut(s)	127
BsaXI	ACNNNNNCTCC	2 cut(s)	169, 199
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 134
Bse1I	ACTGG	2 cut(s)	324, 428
BseGI	GGATG	1 cut(s)	91
BseLI	CCNNNNNNNGG	2 cut(s)	17, 134
BseMII	CTCAG	2 cut(s)	202, 288
BseNI	ACTGG	2 cut(s)	324, 428
BseXI	GCAGC	1 cut(s)	26
BseYI	CCCAGC	1 cut(s)	10
BsiSI	CCGG	1 cut(s)	128
BslFI	GGGAC	1 cut(s)	324
BslI	CCNNNNNNNGG	2 cut(s)	17, 134
BsmAI	GTCTC	1 cut(s)	191
BsmFI	GGGAC	1 cut(s)	324
Bsp143I	GATC	2 cut(s)	310, 317
BspACI	CCGC	1 cut(s)	321
BspCNI	CTCAG	2 cut(s)	201, 287
BspLI	GGNNCC	1 cut(s)	498
BspPI	GGATC	2 cut(s)	305, 312
BsrI	ACTGG	2 cut(s)	324, 428
BssMI	GATC	2 cut(s)	310, 317
BstC8I	GCNNGC	2 cut(s)	101, 475
BstDEI	CTNAG	3 cut(s)	188, 251, 274
BstF5I	GGATG	1 cut(s)	91
BstKTI	GATC	2 cut(s)	313, 320
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	2 cut(s)	310, 317
BstSFI	CTRYAG	1 cut(s)	160
BstV1I	GCAGC	1 cut(s)	26
BstX2I	RGATCY	2 cut(s)	310, 317
BstYI	RGATCY	2 cut(s)	310, 317
BtsCI	GGATG	1 cut(s)	91
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	2 cut(s)	204, 331
Cac8I	GCNNGC	2 cut(s)	101, 475
Csp6I	GTAC	1 cut(s)	350
CviAII	CATG	1 cut(s)	65
CviJI	RGCY	6 cut(s)	42, 99, 243, 250, 278, 295
CviKI_1	RGCY	6 cut(s)	42, 99, 243, 250, 278, 295
CviQI	GTAC	1 cut(s)	350
DdeI	CTNAG	3 cut(s)	188, 251, 274
DpnI	GATC	2 cut(s)	312, 319
DpnII	GATC	2 cut(s)	310, 317
DriI	GACNNNNNGTC	1 cut(s)	60
Eam1105I	GACNNNNNGTC	1 cut(s)	60
EciI	GGCGGA	1 cut(s)	310
FaeI	CATG	1 cut(s)	68
FaiI	YATR	6 cut(s)	33, 66, 162, 230, 240, 346
FaqI	GGGAC	1 cut(s)	324
FatI	CATG	1 cut(s)	64
Fnu4HI	GCNGC	1 cut(s)	15
FokI	GGATG	1 cut(s)	78
Fsp4HI	GCNGC	1 cut(s)	15
FspBI	CTAG	2 cut(s)	297, 315
GluI	GCNGC	1 cut(s)	15
GsaI	CCCAGC	1 cut(s)	14
HapII	CCGG	1 cut(s)	128
Hin1II	CATG	1 cut(s)	68
HindIII	AAGCTT	1 cut(s)	97
HinfI	GANTC	1 cut(s)	261
HpaII	CCGG	1 cut(s)	128
HphI	GGTGA	2 cut(s)	149, 341
Hpy166II	GTNNAC	1 cut(s)	350
Hpy188I	TCNGA	4 cut(s)	82, 114, 260, 310
Hpy188III	TCNNGA	3 cut(s)	196, 381, 451
Hpy8I	GTNNAC	1 cut(s)	350
HpyAV	CCTTC	2 cut(s)	326, 448
HpyCH4V	TGCA	4 cut(s)	60, 68, 209, 407
HpyF3I	CTNAG	3 cut(s)	188, 251, 274
Hsp92II	CATG	1 cut(s)	68
Kzo9I	GATC	2 cut(s)	310, 317
LmnI	GCTCC	1 cut(s)	125
Lsp1109I	GCAGC	1 cut(s)	26
MaeI	CTAG	2 cut(s)	297, 315
MaeIII	GTNAC	1 cut(s)	202
MalI	GATC	2 cut(s)	312, 319
MboI	GATC	2 cut(s)	310, 317
MboII	GAAGA	3 cut(s)	67, 226, 278
MflI	RGATCY	2 cut(s)	310, 317
MluCI	AATT	1 cut(s)	385
MmeI	TCCRAC	1 cut(s)	105
MnlI	CCTC	2 cut(s)	124, 283
MseI	TTAA	1 cut(s)	502
MspI	CCGG	1 cut(s)	128
NdeII	GATC	2 cut(s)	310, 317
NlaIII	CATG	1 cut(s)	68
NlaIV	GGNNCC	1 cut(s)	498
NmuCI	GTSAC	1 cut(s)	202
PcsI	WCGNNNNNNNCGW	1 cut(s)	456
PfeI	GAWTC	1 cut(s)	261
PkrI	GCNGC	1 cut(s)	16
PspFI	CCCAGC	1 cut(s)	10
PspN4I	GGNNCC	1 cut(s)	498
PsrI	GAACNNNNNNTAC	1 cut(s)	480
PsuI	RGATCY	2 cut(s)	310, 317
RsaI	GTAC	1 cut(s)	351
RsaNI	GTAC	1 cut(s)	350
SaqAI	TTAA	1 cut(s)	502
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	2 cut(s)	310, 317
SfcI	CTRYAG	1 cut(s)	160
Sse9I	AATT	1 cut(s)	385
SsiI	CCGC	1 cut(s)	321
SspMI	CTAG	2 cut(s)	297, 315
TaqI	TCGA	2 cut(s)	450, 459
TasI	AATT	1 cut(s)	385
TfiI	GAWTC	1 cut(s)	261
Tru1I	TTAA	1 cut(s)	502
Tru9I	TTAA	1 cut(s)	502
TscAI	CASTG	2 cut(s)	211, 331
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	1 cut(s)	14
Tsp45I	GTSAC	1 cut(s)	202
TspRI	CASTG	2 cut(s)	211, 331
XspI	CTAG	2 cut(s)	297, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.