Rroxscaffold_7G00208520

Probable zinc-ribbon domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0002425
Physical Location & Seq
Forward (+)
58514051 .. 58517219
3169 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00208520.1

Sequence Viewer

Length: 243 bp
ATGAGCAATGGGCGACTCGGTGGAAAAGTGAGGTTGATTCGGTGCCCAAAGTGTGAGAATCTTCTTCTCGAACTAGCTGATTACTCGTCGTATCAGCGTGGTGGTTGTGGTGTTGTTCTTGGTGTGATGGGAGTGCAACTTGGAGGTGGCCTATCTCCTCCTTTGTTAGCGGCGCTAAAAGTGAAGCCCTGGTTGTCCCACTCCTTTGCCGAAAGCACGGCCCGGAGAATTCTCATTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zinc_ribbon_12

Protein Analysis

80

Amino Acids

8.58

Weight (kDa)

10.05

Isoelectric Point (pI)

37.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR4-like_1st PF22910 9 - 40 9.8e-15 Enhanced disease resistance 4-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 42
AciI CCGC 1 cut(s) 170
AcsI RAATTY 1 cut(s) 228
AjnI CCWGG 1 cut(s) 188
AluBI AGCT 1 cut(s) 77
AluI AGCT 1 cut(s) 77
AoxI GGCC 2 cut(s) 148, 219
ApoI RAATTY 1 cut(s) 228
AspLEI GCGC 1 cut(s) 175
AspS9I GGNCC 1 cut(s) 220
AsuC2I CCSGG 1 cut(s) 223
BaeGI GKGCMC 1 cut(s) 47
BanI GGYRCC 1 cut(s) 42
BccI CCATC 1 cut(s) 121
BceAI ACGGC 1 cut(s) 234
BciT130I CCWGG 1 cut(s) 190
BcnI CCSGG 1 cut(s) 223
BfaI CTAG 1 cut(s) 74
BfoI RGCGCY 1 cut(s) 176
BisI GCNGC 1 cut(s) 171
BlsI GCNGC 1 cut(s) 172
Bme1390I CCNGG 2 cut(s) 190, 223
BmgT120I GGNCC 1 cut(s) 220
BmiI GGNNCC 1 cut(s) 44
BmrFI CCNGG 2 cut(s) 190, 223
BpuMI CCSGG 1 cut(s) 223
BsaJI CCNNGG 1 cut(s) 188
Bse3DI GCAATG 1 cut(s) 13
BseBI CCWGG 1 cut(s) 190
BseDI CCNNGG 1 cut(s) 188
BseMI GCAATG 1 cut(s) 13
BseRI GAGGAG 1 cut(s) 147
BseSI GKGCMC 1 cut(s) 47
BshFI GGCC 2 cut(s) 150, 221
BshNI GGYRCC 1 cut(s) 42
BsiSI CCGG 1 cut(s) 223
BslFI GGGAC 1 cut(s) 181
BsmFI GGGAC 1 cut(s) 181
BsnI GGCC 2 cut(s) 150, 221
Bsp1286I GDGCHC 1 cut(s) 47
BspACI CCGC 1 cut(s) 170
BspANI GGCC 2 cut(s) 150, 221
BspLI GGNNCC 1 cut(s) 44
BspT107I GGYRCC 1 cut(s) 42
BsrDI GCAATG 1 cut(s) 13
BssECI CCNNGG 1 cut(s) 188
Bst2UI CCWGG 1 cut(s) 190
BstH2I RGCGCY 1 cut(s) 176
BstHHI GCGC 1 cut(s) 175
BstNI CCWGG 1 cut(s) 190
BstSCI CCNGG 2 cut(s) 188, 221
BstSLI GKGCMC 1 cut(s) 47
BsuRI GGCC 2 cut(s) 150, 221
CfoI GCGC 1 cut(s) 175
Cfr13I GGNCC 1 cut(s) 220
CviJI RGCY 4 cut(s) 77, 150, 187, 221
CviKI_1 RGCY 4 cut(s) 77, 150, 187, 221
EcoRI GAATTC 1 cut(s) 228
EcoRII CCWGG 1 cut(s) 188
FaqI GGGAC 1 cut(s) 181
Fnu4HI GCNGC 1 cut(s) 171
Fsp4HI GCNGC 1 cut(s) 171
FspBI CTAG 1 cut(s) 74
GlaI GCGC 1 cut(s) 174
GluI GCNGC 1 cut(s) 171
HaeII RGCGCY 1 cut(s) 176
HaeIII GGCC 2 cut(s) 150, 221
HapII CCGG 1 cut(s) 223
HhaI GCGC 1 cut(s) 175
Hin6I GCGC 1 cut(s) 173
HinP1I GCGC 1 cut(s) 173
HinfI GANTC 3 cut(s) 15, 37, 58
HpaII CCGG 1 cut(s) 223
Hpy188III TCNNGA 1 cut(s) 68
Hpy99I CGWCG 1 cut(s) 91
HpyCH4V TGCA 1 cut(s) 136
HspAI GCGC 1 cut(s) 173
LpnPI CCDG 3 cut(s) 175, 202, 236
MaeI CTAG 1 cut(s) 74
MboII GAAGA 2 cut(s) 53, 56
MhlI GDGCHC 1 cut(s) 47
MluCI AATT 1 cut(s) 228
MlyI GAGTC 1 cut(s) 9
MnlI CCTC 3 cut(s) 24, 137, 168
MspI CCGG 1 cut(s) 223
MspR9I CCNGG 2 cut(s) 190, 223
MvaI CCWGG 1 cut(s) 190
NciI CCSGG 1 cut(s) 223
NlaIV GGNNCC 1 cut(s) 44
PfeI GAWTC 2 cut(s) 37, 58
PkrI GCNGC 1 cut(s) 172
PleI GAGTC 1 cut(s) 9
PpsI GAGTC 1 cut(s) 9
Psp6I CCWGG 1 cut(s) 188
PspGI CCWGG 1 cut(s) 188
PspN4I GGNNCC 1 cut(s) 44
PspPI GGNCC 1 cut(s) 220
SatI GCNGC 1 cut(s) 171
Sau96I GGNCC 1 cut(s) 220
SchI GAGTC 1 cut(s) 9
ScrFI CCNGG 2 cut(s) 190, 223
SduI GDGCHC 1 cut(s) 47
SetI ASST 3 cut(s) 35, 79, 148
Sse9I AATT 1 cut(s) 228
SsiI CCGC 1 cut(s) 170
SspMI CTAG 1 cut(s) 74
StyD4I CCNGG 2 cut(s) 188, 221
TaqI TCGA 1 cut(s) 69
TasI AATT 1 cut(s) 228
TauI GCSGC 1 cut(s) 173
TfiI GAWTC 2 cut(s) 37, 58
XapI RAATTY 1 cut(s) 228
XspI CTAG 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.