Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002425

Physical Location & Seq

Genomic Coordinates Forward (+)

47588006 .. 47588575

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32736

Sequence Viewer

CDS Protein Promoter (2k)

Length: 156 bp

ATGGGGGACTCAGGTGGAAAAGTGAGGTTGGTTCAGTGCCCAAAGTGTGAGAATCTTCTTCCTCAGCTAGCTGATTACTCTATGTATCAGTGTGGTGCTGTTCTTAGAGGGAAAGATGGGATTTTAGTGTTGAAACTTTTACAATTACCAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zinc_ribbon_12

Protein Analysis

51

Amino Acids

5.55

Weight (kDa)

8.57

Isoelectric Point (pI)

31.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EDR4-like_1st	PF22910	7 - 33	2.8e-14	Enhanced disease resistance 4-like, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05190
fragaria_vesca	FvH4_7g26160
malus_domestica	MD01G1169800.v1.1 MD01G1169900.v1.1 MD07G1235500.v1.1
prunus_persica	Prupe.2G265800_v2.0.a1 Prupe.2G265800_v2.0.a1 Prupe.2G265800_v2.0.a1 Prupe.4G213000_v2.0.a1 Prupe.4G213000_v2.0.a1 Prupe.4G213000_v2.0.a1 Prupe.4G213000_v2.0.a1 Prupe.4G213000_v2.0.a1
pyrus_communis	pycom01g18250 pycom01g18260 pycom07g21310
rosa_chinensis	RchiOBHm_Chr1g0372591 RchiOBHm_Chr4g0399021 RchiOBHm_Chr5g0049731 RchiOBHm_Chr7g0243711
rosa_laevigata	RLG00000001030 RLG00000008808 RLG00000010509 RLG00000026888
rosa_multiflora	Rmu_ssc0000419.1_g000010
rosa_roxburghii	Rroxscaffold_7G00208520
rosa_rugosa	Rorug01G0066000 Rorug01G0373300
rosa_samantha	Rh1AG381600 Rh1BG345000 Rh1CG358400 Rh1DG376200 Rh2BG091800 Rh3DG186100 Rh4DG129900 Rh5AG465400 Rh7AG476000
rosa_wichuraiana	Rw0G018150 Rw1G033560 Rw2G022780 Rw7G041610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	133
AluBI	AGCT	2 cut(s)	67, 71
AluI	AGCT	2 cut(s)	67, 71
AsuNHI	GCTAGC	1 cut(s)	67
BaeGI	GKGCMC	1 cut(s)	41
BbvCI	CCTCAGC	1 cut(s)	63
BccI	CCATC	1 cut(s)	110
BfaI	CTAG	1 cut(s)	68
BmtI	GCTAGC	1 cut(s)	71
Bpu10I	CCTNAGC	1 cut(s)	63
BseMII	CTCAG	2 cut(s)	24, 77
BseSI	GKGCMC	1 cut(s)	41
BslFI	GGGAC	1 cut(s)	20
BsmFI	GGGAC	1 cut(s)	20
Bsp1286I	GDGCHC	1 cut(s)	41
BspCNI	CTCAG	2 cut(s)	23, 76
BspOI	GCTAGC	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	69
BstDEI	CTNAG	3 cut(s)	10, 63, 104
BstSLI	GKGCMC	1 cut(s)	41
BtsIMutI	CAGTG	2 cut(s)	41, 95
Cac8I	GCNNGC	1 cut(s)	69
CviJI	RGCY	2 cut(s)	67, 71
CviKI_1	RGCY	2 cut(s)	67, 71
DdeI	CTNAG	3 cut(s)	10, 63, 104
FaiI	YATR	1 cut(s)	83
FaqI	GGGAC	1 cut(s)	20
FspBI	CTAG	1 cut(s)	68
HinfI	GANTC	2 cut(s)	8, 52
HpyF3I	CTNAG	3 cut(s)	10, 63, 104
MaeI	CTAG	1 cut(s)	68
MboII	GAAGA	2 cut(s)	47, 50
MhlI	GDGCHC	1 cut(s)	41
MluCI	AATT	2 cut(s)	143, 151
MlyI	GAGTC	1 cut(s)	2
MnlI	CCTC	3 cut(s)	18, 72, 101
NheI	GCTAGC	1 cut(s)	67
PfeI	GAWTC	1 cut(s)	52
PleI	GAGTC	1 cut(s)	2
PpsI	GAGTC	1 cut(s)	2
SchI	GAGTC	1 cut(s)	2
SduI	GDGCHC	1 cut(s)	41
SetI	ASST	4 cut(s)	16, 29, 69, 73
SgeI	CNNG	2 cut(s)	24, 80
Sse9I	AATT	2 cut(s)	143, 151
SspMI	CTAG	1 cut(s)	68
TasI	AATT	2 cut(s)	143, 151
TfiI	GAWTC	1 cut(s)	52
TscAI	CASTG	2 cut(s)	41, 95
TspRI	CASTG	2 cut(s)	41, 95
XspI	CTAG	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.