Rh2BG091800

Probable zinc-ribbon domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0002425
Physical Location & Seq
Reverse (-)
7152216 .. 7155482
3267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG091800.1

Sequence Viewer

Length: 327 bp
ATGGGGGACTCAGGTGGAAAAGTGAGGTTTATTCGGTGCCCAAAGTGTGAGAATCTTCTTCCTGAGCTAGCTGATTACTCTGTGTATCAGTGTGGTGGTTGTGGTGCTGTTCTTGGTGCCAAAAAGGATAGGCAGATGAGTGGGAGTGGGTGTCTCAGGTTCTTGATGGTCATTACAAACCAATGCCACAAGTTTATGTTCTTCCTTAGCTACCAGCTTAATTTCATAATCAAACCCACCTCAGCTATCAATCTTCACAAGGTAATAACTCTTTCTTTCACAATTCACAAAGTAATGATTAAGAAATTTTTGGGCACTTATAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zinc_ribbon_12

Protein Analysis

108

Amino Acids

12.13

Weight (kDa)

9.51

Isoelectric Point (pI)

24.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR4-like_1st PF22910 7 - 40 1.1e-20 Enhanced disease resistance 4-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 321
AccB1I GGYRCC 2 cut(s) 36, 116
AcsI RAATTY 1 cut(s) 305
AluBI AGCT 5 cut(s) 67, 71, 210, 217, 245
AluI AGCT 5 cut(s) 67, 71, 210, 217, 245
Alw26I GTCTC 1 cut(s) 158
ApoI RAATTY 1 cut(s) 305
AsuNHI GCTAGC 1 cut(s) 67
BaeGI GKGCMC 2 cut(s) 41, 317
BanI GGYRCC 2 cut(s) 36, 116
BbvCI CCTCAGC 1 cut(s) 241
BccI CCATC 1 cut(s) 160
BcoDI GTCTC 1 cut(s) 158
BfaI CTAG 1 cut(s) 68
BmiI GGNNCC 2 cut(s) 38, 118
BmtI GCTAGC 1 cut(s) 71
Bpu10I CCTNAGC 3 cut(s) 63, 206, 241
BsaXI ACNNNNNCTCC 2 cut(s) 136, 166
BseMII CTCAG 4 cut(s) 24, 54, 169, 255
BseSI GKGCMC 2 cut(s) 41, 317
BshNI GGYRCC 2 cut(s) 36, 116
BslFI GGGAC 1 cut(s) 20
BsmAI GTCTC 1 cut(s) 158
BsmFI GGGAC 1 cut(s) 20
Bsp1286I GDGCHC 2 cut(s) 41, 317
BspCNI CTCAG 4 cut(s) 23, 55, 168, 254
BspLI GGNNCC 2 cut(s) 38, 118
BspOI GCTAGC 1 cut(s) 71
BspT107I GGYRCC 2 cut(s) 36, 116
BstC8I GCNNGC 1 cut(s) 69
BstDEI CTNAG 5 cut(s) 10, 63, 155, 206, 241
BstMAI GTCTC 1 cut(s) 158
BstSLI GKGCMC 2 cut(s) 41, 317
BtsIMutI CAGTG 1 cut(s) 95
Cac8I GCNNGC 1 cut(s) 69
CviJI RGCY 5 cut(s) 67, 71, 210, 217, 245
CviKI_1 RGCY 5 cut(s) 67, 71, 210, 217, 245
DdeI CTNAG 5 cut(s) 10, 63, 155, 206, 241
FaiI YATR 3 cut(s) 197, 227, 321
FaqI GGGAC 1 cut(s) 20
FspBI CTAG 1 cut(s) 68
HinfI GANTC 2 cut(s) 8, 52
Hpy188III TCNNGA 2 cut(s) 62, 163
HpyF3I CTNAG 5 cut(s) 10, 63, 155, 206, 241
LpnPI CCDG 3 cut(s) 75, 142, 227
MaeI CTAG 1 cut(s) 68
MboII GAAGA 4 cut(s) 47, 50, 193, 245
MhlI GDGCHC 2 cut(s) 41, 317
MluCI AATT 4 cut(s) 220, 282, 305, 322
MlyI GAGTC 1 cut(s) 2
MnlI CCTC 2 cut(s) 18, 250
MseI TTAA 2 cut(s) 219, 300
NheI GCTAGC 1 cut(s) 67
NlaIV GGNNCC 2 cut(s) 38, 118
PfeI GAWTC 1 cut(s) 52
PleI GAGTC 1 cut(s) 2
PpsI GAGTC 1 cut(s) 2
PsiI TTATAA 1 cut(s) 321
PspN4I GGNNCC 2 cut(s) 38, 118
SaqAI TTAA 2 cut(s) 219, 300
SchI GAGTC 1 cut(s) 2
SduI GDGCHC 2 cut(s) 41, 317
SgeI CNNG 9 cut(s) 24, 74, 80, 125, 169, 175, 202, 226, 271
Sse9I AATT 4 cut(s) 220, 282, 305, 322
SspMI CTAG 1 cut(s) 68
TasI AATT 4 cut(s) 220, 282, 305, 322
TfiI GAWTC 1 cut(s) 52
Tru1I TTAA 2 cut(s) 219, 300
Tru9I TTAA 2 cut(s) 219, 300
TscAI CASTG 1 cut(s) 95
TspDTI ATGAA 1 cut(s) 214
TspRI CASTG 1 cut(s) 95
XapI RAATTY 1 cut(s) 305
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.