Rh3DG186100

Probable zinc-ribbon domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0002425
Physical Location & Seq
Forward (+)
16519496 .. 16525509
6014 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG186100.1

Sequence Viewer

Length: 357 bp
ATGGGGGACTCAGGTGGAAAAGTGAGGTTGATTCGGTGCCCAAAGTGTGAGAATCTTCTTCCTGAGCTATCTTATTACTCTGTGTATCAGTGTGGTGGTTGTGGTGCTGTTCTTGGTGCAAAAAAGGAAAGGCAGATGAGTGGGAGTGGGTGTCTTAGGTTCTTGATGGTCATTGCAAACCAATGCCACAAGTCTCTGTTCTTCCTTAGCTACCAGCTTAATTTAAGAATCAAACCCACCTCAGCTATCAATCTTCGCAAGTCCACTGGAATCTCCCTCATAAGATCAAAATACTTGAGTTCTGCATGTGCTGATAAAGATGAATTTCCAGAAGTCGGACTGCGAATCATTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zinc_ribbon_12

Protein Analysis

118

Amino Acids

13.06

Weight (kDa)

9.42

Isoelectric Point (pI)

39.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR4-like_1st PF22910 7 - 40 7.6e-19 Enhanced disease resistance 4-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 36
AcsI RAATTY 1 cut(s) 323
AfiI CCNNNNNNNGG 1 cut(s) 335
AluBI AGCT 4 cut(s) 67, 210, 217, 245
AluI AGCT 4 cut(s) 67, 210, 217, 245
Alw26I GTCTC 1 cut(s) 198
ApoI RAATTY 1 cut(s) 323
BaeGI GKGCMC 1 cut(s) 41
BanI GGYRCC 1 cut(s) 36
BbvCI CCTCAGC 1 cut(s) 241
BccI CCATC 1 cut(s) 160
BcoDI GTCTC 1 cut(s) 198
BmiI GGNNCC 1 cut(s) 38
Bpu10I CCTNAGC 3 cut(s) 63, 206, 241
BpuEI CTTGAG 1 cut(s) 316
BsaXI ACNNNNNCTCC 2 cut(s) 136, 166
Bsc4I CCNNNNNNNGG 1 cut(s) 335
Bse1I ACTGG 1 cut(s) 271
Bse3DI GCAATG 1 cut(s) 171
BseLI CCNNNNNNNGG 1 cut(s) 335
BseMI GCAATG 1 cut(s) 171
BseMII CTCAG 3 cut(s) 24, 54, 255
BseNI ACTGG 1 cut(s) 271
BseSI GKGCMC 1 cut(s) 41
BshNI GGYRCC 1 cut(s) 36
BslFI GGGAC 1 cut(s) 20
BslI CCNNNNNNNGG 1 cut(s) 335
BsmAI GTCTC 1 cut(s) 198
BsmFI GGGAC 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 41
Bsp143I GATC 1 cut(s) 284
BspCNI CTCAG 3 cut(s) 23, 55, 254
BspLI GGNNCC 1 cut(s) 38
BspT107I GGYRCC 1 cut(s) 36
BsrDI GCAATG 1 cut(s) 171
BsrI ACTGG 1 cut(s) 271
BssMI GATC 1 cut(s) 284
BstDEI CTNAG 5 cut(s) 10, 63, 155, 206, 241
BstKTI GATC 1 cut(s) 287
BstMAI GTCTC 1 cut(s) 198
BstMBI GATC 1 cut(s) 284
BstNSI RCATGY 1 cut(s) 309
BstSLI GKGCMC 1 cut(s) 41
BtsIMutI CAGTG 2 cut(s) 95, 264
CviAII CATG 1 cut(s) 306
CviJI RGCY 4 cut(s) 67, 210, 217, 245
CviKI_1 RGCY 4 cut(s) 67, 210, 217, 245
DdeI CTNAG 5 cut(s) 10, 63, 155, 206, 241
DpnI GATC 1 cut(s) 286
DpnII GATC 1 cut(s) 284
FaeI CATG 1 cut(s) 309
FaiI YATR 2 cut(s) 281, 307
FaqI GGGAC 1 cut(s) 20
FatI CATG 1 cut(s) 305
Hin1II CATG 1 cut(s) 309
HinfI GANTC 6 cut(s) 8, 31, 52, 228, 270, 345
Hpy166II GTNNAC 1 cut(s) 264
Hpy188I TCNGA 1 cut(s) 338
Hpy188III TCNNGA 3 cut(s) 62, 163, 329
Hpy8I GTNNAC 1 cut(s) 264
HpyCH4V TGCA 3 cut(s) 119, 176, 305
HpyF3I CTNAG 5 cut(s) 10, 63, 155, 206, 241
Hsp92II CATG 1 cut(s) 309
Kzo9I GATC 1 cut(s) 284
LpnPI CCDG 4 cut(s) 75, 227, 252, 342
MalI GATC 1 cut(s) 286
MboI GATC 1 cut(s) 284
MboII GAAGA 4 cut(s) 47, 50, 193, 245
MhlI GDGCHC 1 cut(s) 41
MluCI AATT 2 cut(s) 220, 323
MlyI GAGTC 1 cut(s) 2
MmeI TCCRAC 1 cut(s) 316
MnlI CCTC 3 cut(s) 18, 250, 287
MseI TTAA 2 cut(s) 219, 224
NdeII GATC 1 cut(s) 284
NlaIII CATG 1 cut(s) 309
NlaIV GGNNCC 1 cut(s) 38
NspI RCATGY 1 cut(s) 309
PfeI GAWTC 5 cut(s) 31, 52, 228, 270, 345
PleI GAGTC 1 cut(s) 2
PpsI GAGTC 1 cut(s) 2
PspN4I GGNNCC 1 cut(s) 38
SaqAI TTAA 2 cut(s) 219, 224
Sau3AI GATC 1 cut(s) 284
SchI GAGTC 1 cut(s) 2
SduI GDGCHC 1 cut(s) 41
SetI ASST 8 cut(s) 16, 29, 69, 161, 212, 219, 242, 247
SmlI CTYRAG 1 cut(s) 295
SmoI CTYRAG 1 cut(s) 295
Sse9I AATT 2 cut(s) 220, 323
TasI AATT 2 cut(s) 220, 323
TfiI GAWTC 5 cut(s) 31, 52, 228, 270, 345
Tru1I TTAA 2 cut(s) 219, 224
Tru9I TTAA 2 cut(s) 219, 224
TscAI CASTG 2 cut(s) 95, 271
TspDTI ATGAA 1 cut(s) 336
TspRI CASTG 2 cut(s) 95, 271
XapI RAATTY 1 cut(s) 323
XceI RCATGY 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.