Probable zinc-ribbon domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G05190 |
| fragaria_vesca | FvH4_7g26160 |
| malus_domestica | MD01G1169800.v1.1 MD01G1169900.v1.1 MD07G1235500.v1.1 |
| prunus_persica | Prupe.2G265800_v2.0.a1 Prupe.2G265800_v2.0.a1 Prupe.2G265800_v2.0.a1 Prupe.4G213000_v2.0.a1 Prupe.4G213000_v2.0.a1 Prupe.4G213000_v2.0.a1 Prupe.4G213000_v2.0.a1 Prupe.4G213000_v2.0.a1 |
| pyrus_communis | pycom01g18250 pycom01g18260 pycom07g21310 |
| rosa_chinensis | RchiOBHm_Chr1g0372591 RchiOBHm_Chr4g0399021 RchiOBHm_Chr5g0049731 RchiOBHm_Chr7g0243711 |
| rosa_laevigata | RLG00000001030 RLG00000008808 RLG00000010509 RLG00000026888 |
| rosa_multiflora | Rmu_ssc0000419.1_g000010 |
| rosa_roxburghii | Rroxscaffold_7G00208520 |
| rosa_rugosa | Rorug01G0066000 Rorug01G0373300 |
| rosa_samantha | Rh1AG381600 Rh1BG345000 Rh1CG358400 Rh1DG376200 Rh2BG091800 Rh3DG186100 Rh4DG129900 Rh5AG465400 Rh7AG476000 |
| rosa_wichuraiana | Rw0G018150 Rw1G033560 Rw2G022780 Rw7G041610 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2925 |
| AarI | CACCTGC | 1 cut(s) | 2888 |
| Acc36I | ACCTGC | 2 cut(s) | 2888, 2959 |
| AccBSI | CCGCTC | 1 cut(s) | 2588 |
| AccI | GTMKAC | 2 cut(s) | 87, 1506 |
| AciI | CCGC | 8 cut(s) | 231, 1823, 2102, 2452, 2588, 2939, 2997, 3095 |
| AclWI | GGATC | 7 cut(s) | 1134, 1241, 1254, 2214, 2666, 3092, 3105 |
| AcsI | RAATTY | 2 cut(s) | 623, 2216 |
| AcvI | CACGTG | 1 cut(s) | 1658 |
| AdeI | CACNNNGTG | 1 cut(s) | 3086 |
| AfaI | GTAC | 3 cut(s) | 2513, 2621, 2711 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 416, 515, 803, 905, 1007, 1109, 1211, 2897, 3257 |
| AflII | CTTAAG | 2 cut(s) | 1183, 3017 |
| AflIII | ACRYGT | 1 cut(s) | 2394 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2877 |
| AhlI | ACTAGT | 1 cut(s) | 31 |
| AjnI | CCWGG | 4 cut(s) | 1720, 2153, 2236, 2770 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 182, 214 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 3460, 3492 |
| Alw21I | GWGCWC | 3 cut(s) | 158, 2908, 3113 |
| Alw26I | GTCTC | 5 cut(s) | 1287, 1556, 1984, 3256, 3274 |
| AlwI | GGATC | 7 cut(s) | 1134, 1241, 1254, 2214, 2666, 3092, 3105 |
| Ama87I | CYCGRG | 5 cut(s) | 262, 415, 904, 1108, 1606 |
| AoxI | GGCC | 5 cut(s) | 888, 961, 1563, 2551, 3073 |
| ApoI | RAATTY | 2 cut(s) | 623, 2216 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 253, 1579 |
| AspA2I | CCTAGG | 3 cut(s) | 2288, 2317, 2564 |
| AspS9I | GGNCC | 2 cut(s) | 2411, 3074 |
| AsuHPI | GGTGA | 7 cut(s) | 1121, 1292, 1361, 1446, 1482, 2851, 3402 |
| AsuII | TTCGAA | 1 cut(s) | 1865 |
| AvaI | CYCGRG | 5 cut(s) | 262, 415, 904, 1108, 1606 |
| AvaII | GGWCC | 1 cut(s) | 2411 |
| AvrII | CCTAGG | 3 cut(s) | 2288, 2317, 2564 |
| AxyI | CCTNAGG | 1 cut(s) | 514 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1342, 1375 |
| BamHI | GGATCC | 2 cut(s) | 1246, 3097 |
| BanII | GRGCYC | 1 cut(s) | 2908 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2584, 2616 |
| BauI | CACGAG | 1 cut(s) | 1537 |
| BbrPI | CACGTG | 1 cut(s) | 1658 |
| BbsI | GAAGAC | 9 cut(s) | 354, 555, 657, 741, 843, 945, 1047, 1854, 2239 |
| Bbv12I | GWGCWC | 3 cut(s) | 158, 2908, 3113 |
| BccI | CCATC | 7 cut(s) | 188, 545, 1466, 1964, 1965, 1985, 2287 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2468, 2502 |
| BciT130I | CCWGG | 4 cut(s) | 1722, 2155, 2238, 2772 |
| BclI | TGATCA | 3 cut(s) | 1333, 1849, 2002 |
| BcoDI | GTCTC | 5 cut(s) | 1287, 1556, 1984, 3256, 3274 |
| BcuI | ACTAGT | 1 cut(s) | 31 |
| BfmI | CTRYAG | 6 cut(s) | 276, 1263, 1881, 1917, 2942, 2952 |
| BfrI | CTTAAG | 2 cut(s) | 1183, 3017 |
| BfuAI | ACCTGC | 2 cut(s) | 2888, 2959 |
| BglII | AGATCT | 1 cut(s) | 1901 |
| BlnI | CCTAGG | 3 cut(s) | 2288, 2317, 2564 |
| BmcAI | AGTACT | 1 cut(s) | 2711 |
| Bme1390I | CCNGG | 4 cut(s) | 1722, 2155, 2238, 2772 |
| Bme18I | GGWCC | 1 cut(s) | 2411 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2877 |
| BmeT110I | CYCGRG | 5 cut(s) | 262, 415, 904, 1108, 1606 |
| BmgT120I | GGNCC | 2 cut(s) | 2411, 3074 |
| BmrFI | CCNGG | 4 cut(s) | 1722, 2155, 2238, 2772 |
| BmrI | ACTGGG | 1 cut(s) | 2503 |
| BmsI | GCATC | 4 cut(s) | 233, 2537, 2695, 2969 |
| BmuI | ACTGGG | 1 cut(s) | 2503 |
| BpiI | GAAGAC | 9 cut(s) | 354, 555, 657, 741, 843, 945, 1047, 1854, 2239 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3271, 3303 |
| BpmI | CTGGAG | 2 cut(s) | 2623, 2682 |
| Bpu14I | TTCGAA | 1 cut(s) | 1865 |
| Bsa29I | ATCGAT | 1 cut(s) | 288 |
| BsaAI | YACGTR | 2 cut(s) | 1658, 2759 |
| BsaWI | WCCGGW | 3 cut(s) | 64, 2413, 2736 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 145, 175, 1693, 1723, 1783, 1813 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 416, 515, 803, 905, 1007, 1109, 1211, 2897, 3257 |
| Bse118I | RCCGGY | 1 cut(s) | 51 |
| Bse1I | ACTGG | 8 cut(s) | 163, 1436, 1545, 2509, 2640, 2788, 3314, 3348 |
| Bse21I | CCTNAGG | 1 cut(s) | 514 |
| Bse3DI | GCAATG | 1 cut(s) | 1430 |
| BseBI | CCWGG | 4 cut(s) | 1722, 2155, 2238, 2772 |
| BseCI | ATCGAT | 1 cut(s) | 288 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 416, 515, 803, 905, 1007, 1109, 1211, 2897, 3257 |
| BseMI | GCAATG | 1 cut(s) | 1430 |
| BseNI | ACTGG | 8 cut(s) | 163, 1436, 1545, 2509, 2640, 2788, 3314, 3348 |
| BseRI | GAGGAG | 4 cut(s) | 553, 2549, 2552, 3401 |
| BseYI | CCCAGC | 2 cut(s) | 1942, 2604 |
| BsgI | GTGCAG | 1 cut(s) | 2288 |
| BshFI | GGCC | 5 cut(s) | 890, 963, 1565, 2553, 3075 |
| BshVI | ATCGAT | 1 cut(s) | 288 |
| BsiHKAI | GWGCWC | 3 cut(s) | 158, 2908, 3113 |
| BsiHKCI | CYCGRG | 5 cut(s) | 262, 415, 904, 1108, 1606 |
| BsiSI | CCGG | 6 cut(s) | 52, 65, 74, 1307, 2414, 2737 |
| BslFI | GGGAC | 4 cut(s) | 1924, 2807, 3035, 3496 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 416, 515, 803, 905, 1007, 1109, 1211, 2897, 3257 |
| BsmAI | GTCTC | 5 cut(s) | 1287, 1556, 1984, 3256, 3274 |
| BsmBI | CGTCTC | 2 cut(s) | 3256, 3274 |
| BsmFI | GGGAC | 4 cut(s) | 1924, 2807, 3035, 3496 |
| BsmI | GAATGC | 6 cut(s) | 275, 326, 527, 815, 1019, 3070 |
| BsnI | GGCC | 5 cut(s) | 890, 963, 1565, 2553, 3075 |
| BsoBI | CYCGRG | 5 cut(s) | 262, 415, 904, 1108, 1606 |
| Bsp119I | TTCGAA | 1 cut(s) | 1865 |
| Bsp1286I | GDGCHC | 3 cut(s) | 158, 2908, 3113 |
| Bsp19I | CCATGG | 1 cut(s) | 2548 |
| BspACI | CCGC | 8 cut(s) | 231, 1823, 2102, 2452, 2588, 2939, 2997, 3095 |
| BspANI | GGCC | 5 cut(s) | 890, 963, 1565, 2553, 3075 |
| BspDI | ATCGAT | 1 cut(s) | 288 |
| BspHI | TCATGA | 2 cut(s) | 2833, 3217 |
| BspMAI | CTGCAG | 3 cut(s) | 1921, 2946, 2956 |
| BspMI | ACCTGC | 2 cut(s) | 2888, 2959 |
| BspPI | GGATC | 7 cut(s) | 1134, 1241, 1254, 2214, 2666, 3092, 3105 |
| BspT104I | TTCGAA | 1 cut(s) | 1865 |
| BspTI | CTTAAG | 2 cut(s) | 1183, 3017 |
| BsrBI | CCGCTC | 1 cut(s) | 2588 |
| BsrDI | GCAATG | 1 cut(s) | 1430 |
| BsrFI | RCCGGY | 1 cut(s) | 51 |
| BsrI | ACTGG | 8 cut(s) | 163, 1436, 1545, 2509, 2640, 2788, 3314, 3348 |
| BssAI | RCCGGY | 1 cut(s) | 51 |
| BssSI | CACGAG | 1 cut(s) | 1537 |
| BssT1I | CCWWGG | 5 cut(s) | 891, 2288, 2317, 2548, 2564 |
| Bst2BI | CACGAG | 1 cut(s) | 1537 |
| Bst2UI | CCWGG | 4 cut(s) | 1722, 2155, 2238, 2772 |
| Bst4CI | ACNGT | 7 cut(s) | 140, 175, 1264, 1355, 1653, 1750, 2798 |
| Bst6I | CTCTTC | 4 cut(s) | 1396, 1987, 2307, 2433 |
| BstAFI | CTTAAG | 2 cut(s) | 1183, 3017 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3170 |
| BstBAI | YACGTR | 2 cut(s) | 1658, 2759 |
| BstBI | TTCGAA | 1 cut(s) | 1865 |
| BstC8I | GCNNGC | 4 cut(s) | 53, 1761, 2481, 3004 |
| BstDSI | CCRYGG | 2 cut(s) | 1354, 2548 |
| BstEII | GGTNACC | 1 cut(s) | 1349 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 513 |
| BstMAI | GTCTC | 5 cut(s) | 1287, 1556, 1984, 3256, 3274 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 2497, 2903, 3003, 3150, 3170 |
| BstNI | CCWGG | 4 cut(s) | 1722, 2155, 2238, 2772 |
| BstNSI | RCATGY | 3 cut(s) | 1759, 2398, 2483 |
| BstPI | GGTNACC | 1 cut(s) | 1349 |
| BstSCI | CCNGG | 4 cut(s) | 1720, 2153, 2236, 2770 |
| BstSFI | CTRYAG | 6 cut(s) | 276, 1263, 1881, 1917, 2942, 2952 |
| BstSNI | TACGTA | 1 cut(s) | 2759 |
| BstV2I | GAAGAC | 9 cut(s) | 354, 555, 657, 741, 843, 945, 1047, 1854, 2239 |
| BstX2I | RGATCY | 3 cut(s) | 1246, 1901, 3097 |
| BstYI | RGATCY | 3 cut(s) | 1246, 1901, 3097 |
| Bsu15I | ATCGAT | 1 cut(s) | 288 |
| Bsu36I | CCTNAGG | 1 cut(s) | 514 |
| BsuRI | GGCC | 5 cut(s) | 890, 963, 1565, 2553, 3075 |
| BsuTUI | ATCGAT | 1 cut(s) | 288 |
| BtgI | CCRYGG | 2 cut(s) | 1354, 2548 |
| BtsI | GCAGTG | 1 cut(s) | 1914 |
| BtsIMutI | CAGTG | 9 cut(s) | 156, 180, 372, 759, 1914, 2647, 2795, 2803, 3321 |
| BveI | ACCTGC | 2 cut(s) | 2888, 2959 |
| Cac8I | GCNNGC | 4 cut(s) | 53, 1761, 2481, 3004 |
| CciI | TCATGA | 2 cut(s) | 2833, 3217 |
| Cfr10I | RCCGGY | 1 cut(s) | 51 |
| Cfr13I | GGNCC | 2 cut(s) | 2411, 3074 |
| ClaI | ATCGAT | 1 cut(s) | 288 |
| CseI | GACGC | 2 cut(s) | 2867, 3291 |
| CsiI | ACCWGGT | 1 cut(s) | 2236 |
| Csp6I | GTAC | 3 cut(s) | 2512, 2620, 2710 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 79, 114 |
| CviQI | GTAC | 3 cut(s) | 2512, 2620, 2710 |
| DraI | TTTAAA | 3 cut(s) | 165, 885, 2472 |
| DraIII | CACNNNGTG | 1 cut(s) | 3086 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2877 |
| Eam1104I | CTCTTC | 4 cut(s) | 1396, 1987, 2307, 2433 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2877 |
| EarI | CTCTTC | 4 cut(s) | 1396, 1987, 2307, 2433 |
| EciI | GGCGGA | 1 cut(s) | 2117 |
| Ecl136II | GAGCTC | 1 cut(s) | 2906 |
| Eco105I | TACGTA | 1 cut(s) | 2759 |
| Eco130I | CCWWGG | 5 cut(s) | 891, 2288, 2317, 2548, 2564 |
| Eco147I | AGGCCT | 1 cut(s) | 963 |
| Eco24I | GRGCYC | 1 cut(s) | 2908 |
| Eco32I | GATATC | 2 cut(s) | 1630, 3471 |
| Eco47I | GGWCC | 1 cut(s) | 2411 |
| Eco53kI | GAGCTC | 1 cut(s) | 2906 |
| Eco72I | CACGTG | 1 cut(s) | 1658 |
| Eco81I | CCTNAGG | 1 cut(s) | 514 |
| Eco88I | CYCGRG | 5 cut(s) | 262, 415, 904, 1108, 1606 |
| Eco91I | GGTNACC | 1 cut(s) | 1349 |
| EcoICRI | GAGCTC | 1 cut(s) | 2906 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 513 |
| EcoO109I | RGGNCCY | 1 cut(s) | 3074 |
| EcoO65I | GGTNACC | 1 cut(s) | 1349 |
| EcoRI | GAATTC | 1 cut(s) | 623 |
| EcoRII | CCWGG | 4 cut(s) | 1720, 2153, 2236, 2770 |
| EcoRV | GATATC | 2 cut(s) | 1630, 3471 |
| EcoT14I | CCWWGG | 5 cut(s) | 891, 2288, 2317, 2548, 2564 |
| EcoT22I | ATGCAT | 2 cut(s) | 2358, 2688 |
| EcoT38I | GRGCYC | 1 cut(s) | 2908 |
| ErhI | CCWWGG | 5 cut(s) | 891, 2288, 2317, 2548, 2564 |
| Esp3I | CGTCTC | 2 cut(s) | 3256, 3274 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1966, 1998 |
| FaqI | GGGAC | 4 cut(s) | 1924, 2807, 3035, 3496 |
| FauI | CCCGC | 1 cut(s) | 2581 |
| FauNDI | CATATG | 2 cut(s) | 1599, 3235 |
| FbaI | TGATCA | 3 cut(s) | 1333, 1849, 2002 |
| FblI | GTMKAC | 2 cut(s) | 87, 1506 |
| FriOI | GRGCYC | 1 cut(s) | 2908 |
| GsaI | CCCAGC | 2 cut(s) | 1946, 2608 |
| GsuI | CTGGAG | 2 cut(s) | 2623, 2682 |
| HaeIII | GGCC | 5 cut(s) | 890, 963, 1565, 2553, 3075 |
| HapII | CCGG | 6 cut(s) | 52, 65, 74, 1307, 2414, 2737 |
| HgaI | GACGC | 2 cut(s) | 2867, 3291 |
| HincII | GTYRAC | 2 cut(s) | 2424, 2464 |
| HindII | GTYRAC | 2 cut(s) | 2424, 2464 |
| HpaI | GTTAAC | 1 cut(s) | 2464 |
| HpaII | CCGG | 6 cut(s) | 52, 65, 74, 1307, 2414, 2737 |
| HphI | GGTGA | 7 cut(s) | 1121, 1292, 1361, 1446, 1482, 2851, 3402 |
| Hpy166II | GTNNAC | 9 cut(s) | 15, 88, 1454, 1481, 1507, 1753, 2424, 2464, 2622 |
| Hpy8I | GTNNAC | 9 cut(s) | 15, 88, 1454, 1481, 1507, 1753, 2424, 2464, 2622 |
| HpyCH4III | ACNGT | 7 cut(s) | 140, 175, 1264, 1355, 1653, 1750, 2798 |
| HpyCH4IV | ACGT | 5 cut(s) | 207, 1097, 1657, 1683, 2758 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 2497, 2903, 3003, 3150, 3170 |
| HpySE526I | ACGT | 5 cut(s) | 207, 1097, 1657, 1683, 2758 |
| KroI | GCCGGC | 1 cut(s) | 51 |
| KroNI | GCCGGC | 1 cut(s) | 53 |
| Ksp22I | TGATCA | 3 cut(s) | 1333, 1849, 2002 |
| KspAI | GTTAAC | 1 cut(s) | 2464 |
| LweI | GCATC | 4 cut(s) | 233, 2537, 2695, 2969 |
| MabI | ACCWGGT | 1 cut(s) | 2236 |
| MaeII | ACGT | 5 cut(s) | 207, 1097, 1657, 1683, 2758 |
| MaeIII | GTNAC | 9 cut(s) | 203, 1187, 1349, 1438, 1653, 1744, 2754, 3181, 3431 |
| MbiI | CCGCTC | 1 cut(s) | 2588 |
| MflI | RGATCY | 3 cut(s) | 1246, 1901, 3097 |
| MhlI | GDGCHC | 3 cut(s) | 158, 2908, 3113 |
| MlyI | GAGTC | 6 cut(s) | 254, 368, 896, 1100, 2419, 3126 |
| MmeI | TCCRAC | 2 cut(s) | 2389, 3275 |
| Mph1103I | ATGCAT | 2 cut(s) | 2358, 2688 |
| MroNI | GCCGGC | 1 cut(s) | 51 |
| MroXI | GAANNNNTTC | 2 cut(s) | 253, 1579 |
| MseI | TTAA | 8 cut(s) | 164, 884, 1184, 2463, 2471, 2934, 3018, 3497 |
| MslI | CAYNNNNRTG | 7 cut(s) | 1134, 1514, 1676, 1830, 1965, 2399, 2520 |
| MspA1I | CMGCKG | 2 cut(s) | 231, 2941 |
| MspCI | CTTAAG | 2 cut(s) | 1183, 3017 |
| MspI | CCGG | 6 cut(s) | 52, 65, 74, 1307, 2414, 2737 |
| MspR9I | CCNGG | 4 cut(s) | 1722, 2155, 2238, 2772 |
| Mva1269I | GAATGC | 6 cut(s) | 275, 326, 527, 815, 1019, 3070 |
| MvaI | CCWGG | 4 cut(s) | 1722, 2155, 2238, 2772 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 2497, 2903, 3003, 3150, 3170 |
| NaeI | GCCGGC | 1 cut(s) | 53 |
| NcoI | CCATGG | 1 cut(s) | 2548 |
| NdeI | CATATG | 2 cut(s) | 1599, 3235 |
| NgoMIV | GCCGGC | 1 cut(s) | 51 |
| NmuCI | GTSAC | 4 cut(s) | 203, 1187, 1349, 1653 |
| NsiI | ATGCAT | 2 cut(s) | 2358, 2688 |
| NspI | RCATGY | 3 cut(s) | 1759, 2398, 2483 |
| NspV | TTCGAA | 1 cut(s) | 1865 |
| PaeI | GCATGC | 1 cut(s) | 2483 |
| PagI | TCATGA | 2 cut(s) | 2833, 3217 |
| PaqCI | CACCTGC | 1 cut(s) | 2888 |
| PceI | AGGCCT | 1 cut(s) | 963 |
| PciI | ACATGT | 1 cut(s) | 2394 |
| PctI | GAATGC | 6 cut(s) | 275, 326, 527, 815, 1019, 3070 |
| PdiI | GCCGGC | 1 cut(s) | 53 |
| PdmI | GAANNNNTTC | 2 cut(s) | 253, 1579 |
| PflFI | GACNNNGTC | 1 cut(s) | 2238 |
| PfoI | TCCNGGA | 1 cut(s) | 1720 |
| PleI | GAGTC | 6 cut(s) | 254, 367, 896, 1100, 2419, 3126 |
| PmaCI | CACGTG | 1 cut(s) | 1658 |
| PmlI | CACGTG | 1 cut(s) | 1658 |
| PpsI | GAGTC | 6 cut(s) | 254, 367, 896, 1100, 2419, 3126 |
| Ppu21I | YACGTR | 2 cut(s) | 1658, 2759 |
| PscI | ACATGT | 1 cut(s) | 2394 |
| PsiI | TTATAA | 1 cut(s) | 2925 |
| Psp124BI | GAGCTC | 1 cut(s) | 2908 |
| Psp6I | CCWGG | 4 cut(s) | 1720, 2153, 2236, 2770 |
| PspCI | CACGTG | 1 cut(s) | 1658 |
| PspEI | GGTNACC | 1 cut(s) | 1349 |
| PspFI | CCCAGC | 2 cut(s) | 1942, 2604 |
| PspGI | CCWGG | 4 cut(s) | 1720, 2153, 2236, 2770 |
| PspPI | GGNCC | 2 cut(s) | 2411, 3074 |
| PstI | CTGCAG | 3 cut(s) | 1921, 2946, 2956 |
| PsuI | RGATCY | 3 cut(s) | 1246, 1901, 3097 |
| PsyI | GACNNNGTC | 1 cut(s) | 2238 |
| RsaI | GTAC | 3 cut(s) | 2513, 2621, 2711 |
| RsaNI | GTAC | 3 cut(s) | 2512, 2620, 2710 |
| RseI | CAYNNNNRTG | 7 cut(s) | 1134, 1514, 1676, 1830, 1965, 2399, 2520 |
| SacI | GAGCTC | 1 cut(s) | 2908 |
| SaqAI | TTAA | 8 cut(s) | 164, 884, 1184, 2463, 2471, 2934, 3018, 3497 |
| Sau96I | GGNCC | 2 cut(s) | 2411, 3074 |
| ScaI | AGTACT | 1 cut(s) | 2711 |
| SchI | GAGTC | 6 cut(s) | 254, 368, 896, 1100, 2419, 3126 |
| ScrFI | CCNGG | 4 cut(s) | 1722, 2155, 2238, 2772 |
| SduI | GDGCHC | 3 cut(s) | 158, 2908, 3113 |
| SexAI | ACCWGGT | 1 cut(s) | 2236 |
| SfaNI | GCATC | 4 cut(s) | 233, 2537, 2695, 2969 |
| SfcI | CTRYAG | 6 cut(s) | 276, 1263, 1881, 1917, 2942, 2952 |
| SfuI | TTCGAA | 1 cut(s) | 1865 |
| SinI | GGWCC | 1 cut(s) | 2411 |
| SmiI | ATTTAAAT | 1 cut(s) | 2472 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 1134, 1514, 1676, 1830, 1965, 2399, 2520 |
| SnaBI | TACGTA | 1 cut(s) | 2759 |
| SpeI | ACTAGT | 1 cut(s) | 31 |
| SphI | GCATGC | 1 cut(s) | 2483 |
| SseBI | AGGCCT | 1 cut(s) | 963 |
| SsiI | CCGC | 8 cut(s) | 231, 1823, 2102, 2452, 2588, 2939, 2997, 3095 |
| SspI | AATATT | 1 cut(s) | 914 |
| SstI | GAGCTC | 1 cut(s) | 2908 |
| StuI | AGGCCT | 1 cut(s) | 963 |
| StyD4I | CCNGG | 4 cut(s) | 1720, 2153, 2236, 2770 |
| StyI | CCWWGG | 5 cut(s) | 891, 2288, 2317, 2548, 2564 |
| SwaI | ATTTAAAT | 1 cut(s) | 2472 |
| TaaI | ACNGT | 7 cut(s) | 140, 175, 1264, 1355, 1653, 1750, 2798 |
| TaiI | ACGT | 5 cut(s) | 210, 1100, 1660, 1686, 2761 |
| TaqI | TCGA | 7 cut(s) | 28, 288, 1362, 1865, 1934, 2065, 2251 |
| TatI | WGTACW | 2 cut(s) | 2619, 2709 |
| TauI | GCSGC | 2 cut(s) | 234, 2941 |
| Tru1I | TTAA | 8 cut(s) | 164, 884, 1184, 2463, 2471, 2934, 3018, 3497 |
| Tru9I | TTAA | 8 cut(s) | 164, 884, 1184, 2463, 2471, 2934, 3018, 3497 |
| TscAI | CASTG | 9 cut(s) | 163, 180, 379, 766, 1921, 2647, 2795, 2803, 3321 |
| TseFI | GTSAC | 4 cut(s) | 203, 1187, 1349, 1653 |
| Tsp45I | GTSAC | 4 cut(s) | 203, 1187, 1349, 1653 |
| TspRI | CASTG | 9 cut(s) | 163, 180, 379, 766, 1921, 2647, 2795, 2803, 3321 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2238 |
| Vha464I | CTTAAG | 2 cut(s) | 1183, 3017 |
| VpaK11BI | GGWCC | 1 cut(s) | 2411 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 513 |
| XapI | RAATTY | 2 cut(s) | 623, 2216 |
| XbaI | TCTAGA | 1 cut(s) | 314 |
| XceI | RCATGY | 3 cut(s) | 1759, 2398, 2483 |
| XmaJI | CCTAGG | 3 cut(s) | 2288, 2317, 2564 |
| XmiI | GTMKAC | 2 cut(s) | 87, 1506 |
| XmnI | GAANNNNTTC | 2 cut(s) | 253, 1579 |
| ZrmI | AGTACT | 1 cut(s) | 2711 |
| Zsp2I | ATGCAT | 2 cut(s) | 2358, 2688 |