pycom01g18260

Probable zinc-ribbon domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0002425
Physical Location & Seq
Reverse (-)
17305380 .. 17306614
1235 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g18260.1

Sequence Viewer

Length: 588 bp
ATGAAAACCAAACACACCAACAAATCCATTGCCTTTTTCTGTCTCTCTCTCTCTCTCTCTCTCTCTGATCTCTCTGAGGTTTCACTTCTGTTTTGTTCAGATGGTGTTTGGAGTTCAATAAGTTCAAAGTTTGAGACTTTTTTGTTGGAACTGGAAACCTGTTGTTTGTGTTGGACAAAGATGTCTTCTGAATTGACAACAAAAGCTCGACTGGTTCGATGTCCGAAATGCCGGCTGCTTCTTGCGGAGTTGCCCGAAATTCCGGTCTACAAGTGTGGCGGATGTGGCGTCACTCTCCAAGCGAAAAGTCGAATAAATGGACTAAGAAGCAAGAGCGCTAGCGTAAACGACACTGAGGCAGCTCAGAGGATTGGTTTGGATCGCGCTTCTGAGGATGGAAAATCCAGAAGCTCAGGTCGTAATGCAGCTCTTCCCGAATCCGGAGAATGCTTTTCAGACCAAGACAATGAGCGGGATCAGATTATGTCTTCCGAAGTCAATGAGTCTGGAAATTGGTTTTATGATGTGTTGTGTTTGTATGGTAGAAGTTTTTGTTTAGGGTCATATGGTCAAATCAGTACTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zinc_ribbon_12

Protein Analysis

196

Amino Acids

21.51

Weight (kDa)

5.93

Isoelectric Point (pI)

54.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR4-like_1st PF22910 68 - 101 4.1e-18 Enhanced disease resistance 4-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 181
AccBSI CCGCTC 1 cut(s) 472
AccI GTMKAC 1 cut(s) 267
AccII CGCG 1 cut(s) 384
AccIII TCCGGA 1 cut(s) 440
AciI CCGC 3 cut(s) 245, 279, 472
AclWI GGATC 2 cut(s) 387, 483
AcsI RAATTY 1 cut(s) 258
AcyI GRCGYC 1 cut(s) 288
AfaI GTAC 1 cut(s) 580
AfeI AGCGCT 1 cut(s) 337
AfiI CCNNNNNNNGG 1 cut(s) 440
AgsI TTSAA 2 cut(s) 117, 126
AluBI AGCT 4 cut(s) 206, 362, 411, 428
AluI AGCT 4 cut(s) 206, 362, 411, 428
Alw26I GTCTC 2 cut(s) 47, 128
AlwI GGATC 2 cut(s) 387, 483
Aor13HI TCCGGA 1 cut(s) 440
Aor51HI AGCGCT 1 cut(s) 337
ApeKI GCWGC 3 cut(s) 235, 359, 425
ApoI RAATTY 1 cut(s) 258
ArsI GACNNNNNNTTYG 2 cut(s) 249, 281
AspLEI GCGC 2 cut(s) 338, 386
AsuNHI GCTAGC 1 cut(s) 338
BbsI GAAGAC 2 cut(s) 177, 480
BbvI GCAGC 3 cut(s) 222, 371, 437
BccI CCATC 2 cut(s) 95, 389
BcoDI GTCTC 2 cut(s) 47, 128
BfaI CTAG 1 cut(s) 339
BfoI RGCGCY 1 cut(s) 339
BisI GCNGC 3 cut(s) 236, 360, 426
BlsI GCNGC 3 cut(s) 237, 361, 427
BmcAI AGTACT 1 cut(s) 580
BmtI GCTAGC 1 cut(s) 342
BpiI GAAGAC 2 cut(s) 177, 480
Bpu10I CCTNAGC 1 cut(s) 412
BsaHI GRCGYC 1 cut(s) 288
BsaWI WCCGGW 2 cut(s) 262, 440
Bsc4I CCNNNNNNNGG 1 cut(s) 440
Bse118I RCCGGY 1 cut(s) 231
Bse1I ACTGG 2 cut(s) 156, 216
Bse3DI GCAATG 1 cut(s) 27
BseAI TCCGGA 1 cut(s) 440
BseGI GGATG 2 cut(s) 287, 400
BseLI CCNNNNNNNGG 1 cut(s) 440
BseMI GCAATG 1 cut(s) 27
BseMII CTCAG 5 cut(s) 66, 345, 377, 381, 426
BseNI ACTGG 2 cut(s) 156, 216
BseXI GCAGC 3 cut(s) 222, 371, 437
Bsh1236I CGCG 1 cut(s) 384
BsiSI CCGG 3 cut(s) 232, 263, 441
BslI CCNNNNNNNGG 1 cut(s) 440
BsmAI GTCTC 2 cut(s) 47, 128
BsmI GAATGC 1 cut(s) 452
Bsp13I TCCGGA 1 cut(s) 440
Bsp143I GATC 3 cut(s) 67, 379, 475
BspACI CCGC 3 cut(s) 245, 279, 472
BspCNI CTCAG 5 cut(s) 67, 346, 376, 382, 425
BspEI TCCGGA 1 cut(s) 440
BspFNI CGCG 1 cut(s) 384
BspOI GCTAGC 1 cut(s) 342
BspPI GGATC 2 cut(s) 387, 483
BspQI GCTCTTC 1 cut(s) 435
BsrBI CCGCTC 1 cut(s) 472
BsrDI GCAATG 1 cut(s) 27
BsrFI RCCGGY 1 cut(s) 231
BsrI ACTGG 2 cut(s) 156, 216
BssAI RCCGGY 1 cut(s) 231
BssMI GATC 3 cut(s) 67, 379, 475
BssNI GRCGYC 1 cut(s) 288
Bst6I CTCTTC 1 cut(s) 435
BstACI GRCGYC 1 cut(s) 288
BstC8I GCNNGC 2 cut(s) 233, 340
BstDEI CTNAG 6 cut(s) 75, 323, 354, 363, 390, 412
BstF5I GGATG 2 cut(s) 287, 400
BstFNI CGCG 1 cut(s) 384
BstH2I RGCGCY 1 cut(s) 339
BstHHI GCGC 2 cut(s) 338, 386
BstKTI GATC 3 cut(s) 70, 382, 478
BstMAI GTCTC 2 cut(s) 47, 128
BstMBI GATC 3 cut(s) 67, 379, 475
BstMWI GCNNNNNNNGC 1 cut(s) 285
BstUI CGCG 1 cut(s) 384
BstV1I GCAGC 3 cut(s) 222, 371, 437
BstV2I GAAGAC 2 cut(s) 177, 480
BtsCI GGATG 2 cut(s) 287, 400
BtsIMutI CAGTG 1 cut(s) 351
Cac8I GCNNGC 2 cut(s) 233, 340
CfoI GCGC 2 cut(s) 338, 386
Cfr10I RCCGGY 1 cut(s) 231
CseI GACGC 1 cut(s) 277
Csp6I GTAC 1 cut(s) 579
CviJI RGCY 5 cut(s) 206, 235, 362, 411, 428
CviKI_1 RGCY 5 cut(s) 206, 235, 362, 411, 428
CviQI GTAC 1 cut(s) 579
DdeI CTNAG 6 cut(s) 75, 323, 354, 363, 390, 412
DpnI GATC 3 cut(s) 69, 381, 477
DpnII GATC 3 cut(s) 67, 379, 475
DrdI GACNNNNNNGTC 1 cut(s) 181
DseDI GACNNNNNNGTC 1 cut(s) 181
Eam1104I CTCTTC 1 cut(s) 435
EarI CTCTTC 1 cut(s) 435
EciI GGCGGA 1 cut(s) 294
Eco47III AGCGCT 1 cut(s) 337
FaiI YATR 5 cut(s) 485, 522, 540, 565, 567
FauI CCCGC 1 cut(s) 465
FauNDI CATATG 1 cut(s) 565
FblI GTMKAC 1 cut(s) 267
Fnu4HI GCNGC 3 cut(s) 236, 360, 426
FokI GGATG 2 cut(s) 294, 407
Fsp4HI GCNGC 3 cut(s) 236, 360, 426
FspBI CTAG 1 cut(s) 339
GlaI GCGC 2 cut(s) 337, 385
GluI GCNGC 3 cut(s) 236, 360, 426
HaeII RGCGCY 1 cut(s) 339
HapII CCGG 3 cut(s) 232, 263, 441
HgaI GACGC 1 cut(s) 277
HhaI GCGC 2 cut(s) 338, 386
Hin1I GRCGYC 1 cut(s) 288
Hin6I GCGC 2 cut(s) 336, 384
HinP1I GCGC 2 cut(s) 336, 384
HinfI GANTC 2 cut(s) 437, 503
HpaII CCGG 3 cut(s) 232, 263, 441
Hpy166II GTNNAC 2 cut(s) 268, 346
Hpy188III TCNNGA 4 cut(s) 405, 434, 441, 507
Hpy8I GTNNAC 2 cut(s) 268, 346
HpyCH4V TGCA 1 cut(s) 425
HpyF10VI GCNNNNNNNGC 1 cut(s) 285
HpyF3I CTNAG 6 cut(s) 75, 323, 354, 363, 390, 412
Hsp92I GRCGYC 1 cut(s) 288
HspAI GCGC 2 cut(s) 336, 384
Kpn2I TCCGGA 1 cut(s) 440
KroI GCCGGC 1 cut(s) 231
KroNI GCCGGC 1 cut(s) 233
Kzo9I GATC 3 cut(s) 67, 379, 475
LguI GCTCTTC 1 cut(s) 435
LpnPI CCDG 9 cut(s) 137, 172, 197, 245, 276, 399, 418, 454, 492
Lsp1109I GCAGC 3 cut(s) 222, 371, 437
MaeI CTAG 1 cut(s) 339
MaeIII GTNAC 1 cut(s) 289
MalI GATC 3 cut(s) 69, 381, 477
MbiI CCGCTC 1 cut(s) 472
MboI GATC 3 cut(s) 67, 379, 475
MboII GAAGA 3 cut(s) 177, 422, 480
MluCI AATT 3 cut(s) 191, 258, 511
MlyI GAGTC 1 cut(s) 512
MmeI TCCRAC 2 cut(s) 126, 152
MnlI CCTC 4 cut(s) 70, 349, 360, 385
MroI TCCGGA 1 cut(s) 440
MroNI GCCGGC 1 cut(s) 231
MspI CCGG 3 cut(s) 232, 263, 441
Mva1269I GAATGC 1 cut(s) 452
MvnI CGCG 1 cut(s) 384
MwoI GCNNNNNNNGC 1 cut(s) 285
NaeI GCCGGC 1 cut(s) 233
NdeI CATATG 1 cut(s) 565
NdeII GATC 3 cut(s) 67, 379, 475
NgoMIV GCCGGC 1 cut(s) 231
NheI GCTAGC 1 cut(s) 338
NmuCI GTSAC 1 cut(s) 289
PciSI GCTCTTC 1 cut(s) 435
PcsI WCGNNNNNNNCGW 1 cut(s) 214
PctI GAATGC 1 cut(s) 452
PdiI GCCGGC 1 cut(s) 233
PfeI GAWTC 1 cut(s) 437
PkrI GCNGC 3 cut(s) 237, 361, 427
PleI GAGTC 1 cut(s) 511
PpsI GAGTC 1 cut(s) 511
RsaI GTAC 1 cut(s) 580
RsaNI GTAC 1 cut(s) 579
SapI GCTCTTC 1 cut(s) 435
SatI GCNGC 3 cut(s) 236, 360, 426
Sau3AI GATC 3 cut(s) 67, 379, 475
ScaI AGTACT 1 cut(s) 580
SchI GAGTC 1 cut(s) 512
SetI ASST 7 cut(s) 81, 161, 208, 364, 413, 418, 430
Sse9I AATT 3 cut(s) 191, 258, 511
SsiI CCGC 3 cut(s) 245, 279, 472
SspMI CTAG 1 cut(s) 339
TaqI TCGA 3 cut(s) 208, 217, 310
TasI AATT 3 cut(s) 191, 258, 511
TatI WGTACW 1 cut(s) 578
TfiI GAWTC 1 cut(s) 437
TscAI CASTG 1 cut(s) 358
TseFI GTSAC 1 cut(s) 289
TseI GCWGC 3 cut(s) 235, 359, 425
Tsp45I GTSAC 1 cut(s) 289
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 358
XapI RAATTY 1 cut(s) 258
XmiI GTMKAC 1 cut(s) 267
XspI CTAG 1 cut(s) 339
ZrmI AGTACT 1 cut(s) 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.