RchiOBHm_Chr7g0243711

Probable zinc-ribbon domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002425
Physical Location & Seq
Forward (+)
69953294 .. 69954633
1340 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21842

Sequence Viewer

Length: 738 bp
ATGAACCCACAAGCACTAGTAGTCCAGAAAAGCACTTCCGGCACCCCAAGCTCCTCGGCCGCATCAAGAGCAGGGGCGGATCTAAATAGAAGGCTATATGGGCTCAAGCCTAGACAGTTTTTGGGCAAAAAACCACTAAGTATATATCTACTTTTAGTTTCAGCCCATACCCAAAGAGGGAAAAAAACAACATTGGGAGGTAAAAGTCCCGTTCTTCCCCAGCCACAGCCCACAGCAGCTCACTTCTCTCCTCTATGGTCAGACCCTCCTTCGCGGCTCCCCATCCAAGCTGAGTTGAGTTCTTCTCCCTGTATGGCTGTATTGATTTTCATTGTAGACTTGCAGTCATGCAATCATCTTCTCCGGCTTTCCCCATCCAAGCTTGCTTTGTTTTCTGATTTGCTCCAAATGGGAGCAATGGGGGACTCAGGTGGAAAAGTGAGGTTGATTCAGTGCCCAAAGTGTGAGAATCTTCTTCTTGAGCTAGCTGATTACTCTGTGTATCAGTGTGGTGGTTGTGGTGCTGTTCTTGGTGCAAAAAAGGAAAGGCAGATGAGTGGGAGTGGGTGTCTTAGGTTCTTGATGGTCATTGCAAACCAATGCCACAAGTCTATGTTCTTCCTTAGCTACCAGCTTAATTTCAGAATCAAACCCATCTCAGCTATCAATCTTCACAAGGTAATAACTCTTTCTTTCACAATTCACAAGGTAATGATTAAGAAATTTTTGGGCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zinc_ribbon_12

Protein Analysis

245

Amino Acids

26.69

Weight (kDa)

9.94

Isoelectric Point (pI)

41.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR4-like_1st PF22910 146 - 179 5.6e-18 Enhanced disease resistance 4-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 41
AccI GTMKAC 1 cut(s) 336
AccII CGCG 1 cut(s) 274
AciI CCGC 3 cut(s) 60, 77, 274
AclWI GGATC 1 cut(s) 87
AcoI YGGCCR 1 cut(s) 57
AcsI RAATTY 1 cut(s) 722
AfiI CCNNNNNNNGG 1 cut(s) 177
AhdI GACNNNNNGTC 1 cut(s) 343
AhlI ACTAGT 1 cut(s) 16
AluBI AGCT 9 cut(s) 51, 239, 290, 382, 484, 488, 627, 634, 662
AluI AGCT 9 cut(s) 51, 239, 290, 382, 484, 488, 627, 634, 662
AlwI GGATC 1 cut(s) 87
AoxI GGCC 1 cut(s) 57
ApeKI GCWGC 1 cut(s) 236
ApoI RAATTY 1 cut(s) 722
AsuNHI GCTAGC 1 cut(s) 484
BaeGI GKGCMC 2 cut(s) 458, 734
BanI GGYRCC 1 cut(s) 41
BanII GRGCYC 1 cut(s) 105
BbvI GCAGC 1 cut(s) 248
BccI CCATC 4 cut(s) 290, 382, 577, 662
BcuI ACTAGT 1 cut(s) 16
BfaI CTAG 3 cut(s) 17, 111, 485
BisI GCNGC 3 cut(s) 60, 237, 275
BlsI GCNGC 3 cut(s) 61, 238, 276
BmeRI GACNNNNNGTC 1 cut(s) 343
BmiI GGNNCC 2 cut(s) 43, 278
BmsI GCATC 1 cut(s) 71
BmtI GCTAGC 1 cut(s) 488
BplI GAGNNNNNCTC 2 cut(s) 289, 321
Bpu10I CCTNAGC 1 cut(s) 623
BpuEI CTTGAG 2 cut(s) 89, 500
BsaJI CCNNGG 1 cut(s) 54
BsaXI ACNNNNNCTCC 2 cut(s) 553, 583
Bsc4I CCNNNNNNNGG 1 cut(s) 177
Bse3DI GCAATG 2 cut(s) 423, 588
BseDI CCNNGG 1 cut(s) 54
BseGI GGATG 2 cut(s) 282, 374
BseLI CCNNNNNNNGG 1 cut(s) 177
BseMI GCAATG 2 cut(s) 423, 588
BseMII CTCAG 3 cut(s) 282, 441, 672
BseRI GAGGAG 2 cut(s) 43, 240
BseSI GKGCMC 2 cut(s) 458, 734
BseX3I CGGCCG 1 cut(s) 57
BseXI GCAGC 1 cut(s) 248
BseYI CCCAGC 1 cut(s) 219
Bsh1236I CGCG 1 cut(s) 274
Bsh1285I CGRYCG 1 cut(s) 60
BshFI GGCC 1 cut(s) 59
BshNI GGYRCC 1 cut(s) 41
BsiEI CGRYCG 1 cut(s) 60
BsiSI CCGG 2 cut(s) 39, 364
BslFI GGGAC 2 cut(s) 192, 437
BslI CCNNNNNNNGG 1 cut(s) 177
BsmFI GGGAC 2 cut(s) 192, 437
BsnI GGCC 1 cut(s) 59
Bsp1286I GDGCHC 3 cut(s) 105, 458, 734
Bsp143I GATC 1 cut(s) 79
BspACI CCGC 3 cut(s) 60, 77, 274
BspANI GGCC 1 cut(s) 59
BspCNI CTCAG 3 cut(s) 283, 440, 671
BspFNI CGCG 1 cut(s) 274
BspLI GGNNCC 2 cut(s) 43, 278
BspOI GCTAGC 1 cut(s) 488
BspPI GGATC 1 cut(s) 87
BspT107I GGYRCC 1 cut(s) 41
BsrDI GCAATG 2 cut(s) 423, 588
BssECI CCNNGG 1 cut(s) 54
BssMI GATC 1 cut(s) 79
Bst4CI ACNGT 1 cut(s) 117
BstC8I GCNNGC 2 cut(s) 384, 486
BstDEI CTNAG 6 cut(s) 137, 291, 427, 572, 623, 658
BstF5I GGATG 2 cut(s) 282, 374
BstFNI CGCG 1 cut(s) 274
BstKTI GATC 1 cut(s) 82
BstMBI GATC 1 cut(s) 79
BstMCI CGRYCG 1 cut(s) 60
BstMWI GCNNNNNNNGC 4 cut(s) 39, 48, 68, 100
BstSLI GKGCMC 2 cut(s) 458, 734
BstUI CGCG 1 cut(s) 274
BstV1I GCAGC 1 cut(s) 248
BstX2I RGATCY 1 cut(s) 79
BstYI RGATCY 1 cut(s) 79
BstZI CGGCCG 1 cut(s) 57
BsuRI GGCC 1 cut(s) 59
BtsCI GGATG 2 cut(s) 282, 374
BtsIMutI CAGTG 2 cut(s) 458, 512
Cac8I GCNNGC 2 cut(s) 384, 486
CviAII CATG 1 cut(s) 348
DdeI CTNAG 6 cut(s) 137, 291, 427, 572, 623, 658
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
DriI GACNNNNNGTC 1 cut(s) 343
EaeI YGGCCR 1 cut(s) 57
EagI CGGCCG 1 cut(s) 57
Eam1105I GACNNNNNGTC 1 cut(s) 343
EciI GGCGGA 1 cut(s) 92
EclXI CGGCCG 1 cut(s) 57
Eco24I GRGCYC 1 cut(s) 105
Eco52I CGGCCG 1 cut(s) 57
EcoT38I GRGCYC 1 cut(s) 105
FaeI CATG 1 cut(s) 351
FaiI YATR 9 cut(s) 97, 99, 143, 145, 168, 256, 314, 349, 614
FaqI GGGAC 2 cut(s) 192, 437
FatI CATG 1 cut(s) 347
FblI GTMKAC 1 cut(s) 336
Fnu4HI GCNGC 3 cut(s) 60, 237, 275
FokI GGATG 2 cut(s) 269, 361
FriOI GRGCYC 1 cut(s) 105
Fsp4HI GCNGC 3 cut(s) 60, 237, 275
FspBI CTAG 3 cut(s) 17, 111, 485
GluI GCNGC 3 cut(s) 60, 237, 275
GsaI CCCAGC 1 cut(s) 223
HaeIII GGCC 1 cut(s) 59
HapII CCGG 2 cut(s) 39, 364
Hin1II CATG 1 cut(s) 351
HindIII AAGCTT 1 cut(s) 380
HinfI GANTC 4 cut(s) 425, 448, 469, 645
HpaII CCGG 2 cut(s) 39, 364
Hpy166II GTNNAC 1 cut(s) 337
Hpy188I TCNGA 3 cut(s) 262, 397, 644
Hpy188III TCNNGA 4 cut(s) 25, 66, 479, 580
Hpy8I GTNNAC 1 cut(s) 337
HpyAV CCTTC 2 cut(s) 84, 279
HpyCH4III ACNGT 1 cut(s) 117
HpyCH4V TGCA 4 cut(s) 343, 351, 536, 593
HpyF10VI GCNNNNNNNGC 4 cut(s) 39, 48, 68, 100
HpyF3I CTNAG 6 cut(s) 137, 291, 427, 572, 623, 658
Hsp92II CATG 1 cut(s) 351
Kzo9I GATC 1 cut(s) 79
LmnI GCTCC 4 cut(s) 56, 282, 408, 413
LpnPI CCDG 8 cut(s) 38, 52, 57, 233, 322, 377, 414, 644
Lsp1109I GCAGC 1 cut(s) 248
LweI GCATC 1 cut(s) 71
MaeI CTAG 3 cut(s) 17, 111, 485
MalI GATC 1 cut(s) 81
MboI GATC 1 cut(s) 79
MboII GAAGA 7 cut(s) 206, 294, 350, 464, 467, 610, 662
MflI RGATCY 1 cut(s) 79
MhlI GDGCHC 3 cut(s) 105, 458, 734
MluCI AATT 3 cut(s) 637, 699, 722
MlyI GAGTC 1 cut(s) 419
MnlI CCTC 6 cut(s) 64, 170, 191, 261, 276, 435
MseI TTAA 3 cut(s) 636, 717, 736
MspI CCGG 2 cut(s) 39, 364
MvnI CGCG 1 cut(s) 274
MwoI GCNNNNNNNGC 4 cut(s) 39, 48, 68, 100
NdeII GATC 1 cut(s) 79
NheI GCTAGC 1 cut(s) 484
NlaIII CATG 1 cut(s) 351
NlaIV GGNNCC 2 cut(s) 43, 278
NmeAIII GCCGAG 1 cut(s) 35
PfeI GAWTC 3 cut(s) 448, 469, 645
PkrI GCNGC 3 cut(s) 61, 238, 276
PleI GAGTC 1 cut(s) 419
PpsI GAGTC 1 cut(s) 419
PspFI CCCAGC 1 cut(s) 219
PspN4I GGNNCC 2 cut(s) 43, 278
PsuI RGATCY 1 cut(s) 79
SaqAI TTAA 3 cut(s) 636, 717, 736
SatI GCNGC 3 cut(s) 60, 237, 275
Sau3AI GATC 1 cut(s) 79
SchI GAGTC 1 cut(s) 419
SduI GDGCHC 3 cut(s) 105, 458, 734
SfaNI GCATC 1 cut(s) 71
SmlI CTYRAG 2 cut(s) 104, 479
SmoI CTYRAG 2 cut(s) 104, 479
SpeI ACTAGT 1 cut(s) 16
Sse9I AATT 3 cut(s) 637, 699, 722
SsiI CCGC 3 cut(s) 60, 77, 274
SspMI CTAG 3 cut(s) 17, 111, 485
TaaI ACNGT 1 cut(s) 117
TasI AATT 3 cut(s) 637, 699, 722
TauI GCSGC 2 cut(s) 62, 277
TfiI GAWTC 3 cut(s) 448, 469, 645
Tru1I TTAA 3 cut(s) 636, 717, 736
Tru9I TTAA 3 cut(s) 636, 717, 736
TscAI CASTG 2 cut(s) 458, 512
TseI GCWGC 1 cut(s) 236
TspDTI ATGAA 2 cut(s) 17, 319
TspRI CASTG 2 cut(s) 458, 512
XapI RAATTY 1 cut(s) 722
XmiI GTMKAC 1 cut(s) 336
XspI CTAG 3 cut(s) 17, 111, 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.