Probable zinc-ribbon domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G05190 |
| fragaria_vesca | FvH4_7g26160 |
| malus_domestica | MD01G1169800.v1.1 MD01G1169900.v1.1 MD07G1235500.v1.1 |
| prunus_persica | Prupe.2G265800_v2.0.a1 Prupe.2G265800_v2.0.a1 Prupe.2G265800_v2.0.a1 Prupe.4G213000_v2.0.a1 Prupe.4G213000_v2.0.a1 Prupe.4G213000_v2.0.a1 Prupe.4G213000_v2.0.a1 Prupe.4G213000_v2.0.a1 |
| pyrus_communis | pycom01g18250 pycom01g18260 pycom07g21310 |
| rosa_chinensis | RchiOBHm_Chr1g0372591 RchiOBHm_Chr4g0399021 RchiOBHm_Chr5g0049731 RchiOBHm_Chr7g0243711 |
| rosa_laevigata | RLG00000001030 RLG00000008808 RLG00000010509 RLG00000026888 |
| rosa_multiflora | Rmu_ssc0000419.1_g000010 |
| rosa_roxburghii | Rroxscaffold_7G00208520 |
| rosa_rugosa | Rorug01G0066000 Rorug01G0373300 |
| rosa_samantha | Rh1AG381600 Rh1BG345000 Rh1CG358400 Rh1DG376200 Rh2BG091800 Rh3DG186100 Rh4DG129900 Rh5AG465400 Rh7AG476000 |
| rosa_wichuraiana | Rw0G018150 Rw1G033560 Rw2G022780 Rw7G041610 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 2184, 3063 |
| AarI | CACCTGC | 1 cut(s) | 3026 |
| Acc36I | ACCTGC | 2 cut(s) | 3026, 3097 |
| Acc65I | GGTACC | 2 cut(s) | 1781, 1922 |
| AccB1I | GGYRCC | 2 cut(s) | 1781, 1922 |
| AccBSI | CCGCTC | 1 cut(s) | 2726 |
| AccI | GTMKAC | 2 cut(s) | 87, 1503 |
| AciI | CCGC | 6 cut(s) | 1442, 1961, 2240, 2726, 3077, 3233 |
| AclWI | GGATC | 8 cut(s) | 1131, 1238, 1251, 2352, 2804, 3230, 3243, 3380 |
| AcoI | YGGCCR | 1 cut(s) | 1560 |
| AcsI | RAATTY | 1 cut(s) | 620 |
| AcvI | CACGTG | 1 cut(s) | 1655 |
| AdeI | CACNNNGTG | 1 cut(s) | 3224 |
| AfaI | GTAC | 5 cut(s) | 1783, 1924, 2651, 2759, 2849 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 413, 512, 818, 902, 1004, 1106, 1208, 3035, 3395 |
| AflII | CTTAAG | 2 cut(s) | 1180, 3155 |
| AflIII | ACRYGT | 1 cut(s) | 2532 |
| AhlI | ACTAGT | 1 cut(s) | 31 |
| AjnI | CCWGG | 6 cut(s) | 1717, 1858, 2291, 2374, 2840, 2908 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2129, 2161 |
| Alw21I | GWGCWC | 2 cut(s) | 158, 3046 |
| Alw26I | GTCTC | 5 cut(s) | 1284, 1553, 2122, 3394, 3412 |
| AlwI | GGATC | 8 cut(s) | 1131, 1238, 1251, 2352, 2804, 3230, 3243, 3380 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 812 |
| Ama87I | CYCGRG | 5 cut(s) | 259, 412, 817, 1105, 1603 |
| AoxI | GGCC | 4 cut(s) | 958, 1560, 2689, 3211 |
| ApoI | RAATTY | 1 cut(s) | 620 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 250, 1576 |
| Asp718I | GGTACC | 2 cut(s) | 1781, 1922 |
| AspA2I | CCTAGG | 2 cut(s) | 2426, 2455 |
| AspS9I | GGNCC | 2 cut(s) | 2549, 3212 |
| AsuHPI | GGTGA | 9 cut(s) | 199, 950, 1118, 1289, 1358, 1443, 2262, 2989, 3540 |
| AsuII | TTCGAA | 1 cut(s) | 2003 |
| AvaI | CYCGRG | 5 cut(s) | 259, 412, 817, 1105, 1603 |
| AvaII | GGWCC | 1 cut(s) | 2549 |
| AvrII | CCTAGG | 2 cut(s) | 2426, 2455 |
| AxyI | CCTNAGG | 2 cut(s) | 511, 2703 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1339, 1372 |
| BalI | TGGCCA | 1 cut(s) | 1562 |
| BamHI | GGATCC | 2 cut(s) | 1243, 3235 |
| BanI | GGYRCC | 2 cut(s) | 1781, 1922 |
| BanII | GRGCYC | 1 cut(s) | 3046 |
| BarI | GAAGNNNNNNTAC | 6 cut(s) | 1774, 1806, 1915, 1947, 2722, 2754 |
| BauI | CACGAG | 1 cut(s) | 1534 |
| BbrPI | CACGTG | 1 cut(s) | 1655 |
| BbsI | GAAGAC | 8 cut(s) | 351, 552, 654, 756, 942, 1044, 1992, 2377 |
| Bbv12I | GWGCWC | 2 cut(s) | 158, 3046 |
| BccI | CCATC | 9 cut(s) | 443, 542, 848, 1463, 2102, 2103, 2123, 2425, 3001 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2606, 2640 |
| BciT130I | CCWGG | 6 cut(s) | 1719, 1860, 2293, 2376, 2842, 2910 |
| BclI | TGATCA | 3 cut(s) | 1330, 1987, 2140 |
| BcoDI | GTCTC | 5 cut(s) | 1284, 1553, 2122, 3394, 3412 |
| BcuI | ACTAGT | 1 cut(s) | 31 |
| BfmI | CTRYAG | 7 cut(s) | 1260, 2019, 2055, 2588, 3080, 3090, 3207 |
| BfrI | CTTAAG | 2 cut(s) | 1180, 3155 |
| BfuAI | ACCTGC | 2 cut(s) | 3026, 3097 |
| BlnI | CCTAGG | 2 cut(s) | 2426, 2455 |
| BlpI | GCTNAGC | 1 cut(s) | 3012 |
| BmcAI | AGTACT | 1 cut(s) | 2849 |
| Bme1390I | CCNGG | 6 cut(s) | 1719, 1860, 2293, 2376, 2842, 2910 |
| Bme18I | GGWCC | 1 cut(s) | 2549 |
| BmeT110I | CYCGRG | 5 cut(s) | 259, 412, 817, 1105, 1603 |
| BmgT120I | GGNCC | 2 cut(s) | 2549, 3212 |
| BmrFI | CCNGG | 6 cut(s) | 1719, 1860, 2293, 2376, 2842, 2910 |
| BmrI | ACTGGG | 1 cut(s) | 2641 |
| BmsI | GCATC | 5 cut(s) | 230, 237, 2675, 2833, 3107 |
| BmuI | ACTGGG | 1 cut(s) | 2641 |
| BpiI | GAAGAC | 8 cut(s) | 351, 552, 654, 756, 942, 1044, 1992, 2377 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3409, 3441 |
| BpmI | CTGGAG | 1 cut(s) | 2820 |
| Bpu10I | CCTNAGC | 2 cut(s) | 183, 702 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3012 |
| Bpu14I | TTCGAA | 1 cut(s) | 2003 |
| Bsa29I | ATCGAT | 1 cut(s) | 285 |
| BsaAI | YACGTR | 2 cut(s) | 1655, 2897 |
| BsaJI | CCNNGG | 9 cut(s) | 411, 612, 714, 816, 1351, 1604, 2426, 2455, 2686 |
| BsaWI | WCCGGW | 3 cut(s) | 64, 2551, 2874 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 1690, 1720, 1780, 1810, 1831, 1861, 1921, 1951 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 413, 512, 818, 902, 1004, 1106, 1208, 3035, 3395 |
| Bse118I | RCCGGY | 1 cut(s) | 51 |
| Bse1I | ACTGG | 6 cut(s) | 163, 1542, 2647, 2926, 3452, 3486 |
| Bse21I | CCTNAGG | 2 cut(s) | 511, 2703 |
| Bse3DI | GCAATG | 1 cut(s) | 1427 |
| BseBI | CCWGG | 6 cut(s) | 1719, 1860, 2293, 2376, 2842, 2910 |
| BseCI | ATCGAT | 1 cut(s) | 285 |
| BseDI | CCNNGG | 9 cut(s) | 411, 612, 714, 816, 1351, 1604, 2426, 2455, 2686 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 413, 512, 818, 902, 1004, 1106, 1208, 3035, 3395 |
| BseMI | GCAATG | 1 cut(s) | 1427 |
| BseNI | ACTGG | 6 cut(s) | 163, 1542, 2647, 2926, 3452, 3486 |
| BseRI | GAGGAG | 4 cut(s) | 550, 2687, 2690, 3539 |
| BseYI | CCCAGC | 2 cut(s) | 2080, 2742 |
| BsgI | GTGCAG | 1 cut(s) | 2426 |
| BshFI | GGCC | 4 cut(s) | 960, 1562, 2691, 3213 |
| BshNI | GGYRCC | 2 cut(s) | 1781, 1922 |
| BshVI | ATCGAT | 1 cut(s) | 285 |
| BsiHKAI | GWGCWC | 2 cut(s) | 158, 3046 |
| BsiHKCI | CYCGRG | 5 cut(s) | 259, 412, 817, 1105, 1603 |
| BsiSI | CCGG | 6 cut(s) | 52, 65, 74, 1304, 2552, 2875 |
| BslFI | GGGAC | 4 cut(s) | 2062, 2945, 3173, 3634 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 413, 512, 818, 902, 1004, 1106, 1208, 3035, 3395 |
| BsmAI | GTCTC | 5 cut(s) | 1284, 1553, 2122, 3394, 3412 |
| BsmBI | CGTCTC | 1 cut(s) | 3412 |
| BsmFI | GGGAC | 4 cut(s) | 2062, 2945, 3173, 3634 |
| BsmI | GAATGC | 7 cut(s) | 272, 323, 524, 830, 914, 1016, 3208 |
| BsnI | GGCC | 4 cut(s) | 960, 1562, 2691, 3213 |
| BsoBI | CYCGRG | 5 cut(s) | 259, 412, 817, 1105, 1603 |
| Bsp119I | TTCGAA | 1 cut(s) | 2003 |
| Bsp1286I | GDGCHC | 2 cut(s) | 158, 3046 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3012 |
| Bsp19I | CCATGG | 1 cut(s) | 2686 |
| BspACI | CCGC | 6 cut(s) | 1442, 1961, 2240, 2726, 3077, 3233 |
| BspANI | GGCC | 4 cut(s) | 960, 1562, 2691, 3213 |
| BspDI | ATCGAT | 1 cut(s) | 285 |
| BspHI | TCATGA | 2 cut(s) | 2971, 3355 |
| BspMAI | CTGCAG | 4 cut(s) | 2059, 2592, 3084, 3094 |
| BspMI | ACCTGC | 2 cut(s) | 3026, 3097 |
| BspPI | GGATC | 8 cut(s) | 1131, 1238, 1251, 2352, 2804, 3230, 3243, 3380 |
| BspQI | GCTCTTC | 1 cut(s) | 277 |
| BspT104I | TTCGAA | 1 cut(s) | 2003 |
| BspT107I | GGYRCC | 2 cut(s) | 1781, 1922 |
| BspTI | CTTAAG | 2 cut(s) | 1180, 3155 |
| BsrBI | CCGCTC | 1 cut(s) | 2726 |
| BsrDI | GCAATG | 1 cut(s) | 1427 |
| BsrFI | RCCGGY | 1 cut(s) | 51 |
| BsrI | ACTGG | 6 cut(s) | 163, 1542, 2647, 2926, 3452, 3486 |
| BssAI | RCCGGY | 1 cut(s) | 51 |
| BssECI | CCNNGG | 9 cut(s) | 411, 612, 714, 816, 1351, 1604, 2426, 2455, 2686 |
| BssSI | CACGAG | 1 cut(s) | 1534 |
| BssT1I | CCWWGG | 3 cut(s) | 2426, 2455, 2686 |
| Bst2BI | CACGAG | 1 cut(s) | 1534 |
| Bst2UI | CCWGG | 6 cut(s) | 1719, 1860, 2293, 2376, 2842, 2910 |
| Bst6I | CTCTTC | 4 cut(s) | 277, 1393, 2125, 2445 |
| BstAFI | CTTAAG | 2 cut(s) | 1180, 3155 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3308 |
| BstBAI | YACGTR | 2 cut(s) | 1655, 2897 |
| BstBI | TTCGAA | 1 cut(s) | 2003 |
| BstC8I | GCNNGC | 5 cut(s) | 53, 1758, 1899, 2619, 3142 |
| BstDSI | CCRYGG | 2 cut(s) | 1351, 2686 |
| BstEII | GGTNACC | 1 cut(s) | 1346 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 510 |
| BstMAI | GTCTC | 5 cut(s) | 1284, 1553, 2122, 3394, 3412 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 2635, 3041, 3288, 3308 |
| BstNI | CCWGG | 6 cut(s) | 1719, 1860, 2293, 2376, 2842, 2910 |
| BstNSI | RCATGY | 5 cut(s) | 1449, 1756, 1897, 2536, 2621 |
| BstPI | GGTNACC | 1 cut(s) | 1346 |
| BstSCI | CCNGG | 6 cut(s) | 1717, 1858, 2291, 2374, 2840, 2908 |
| BstSFI | CTRYAG | 7 cut(s) | 1260, 2019, 2055, 2588, 3080, 3090, 3207 |
| BstSNI | TACGTA | 1 cut(s) | 2897 |
| BstV2I | GAAGAC | 8 cut(s) | 351, 552, 654, 756, 942, 1044, 1992, 2377 |
| BstX2I | RGATCY | 2 cut(s) | 1243, 3235 |
| BstYI | RGATCY | 2 cut(s) | 1243, 3235 |
| Bsu15I | ATCGAT | 1 cut(s) | 285 |
| Bsu36I | CCTNAGG | 2 cut(s) | 511, 2703 |
| BsuRI | GGCC | 4 cut(s) | 960, 1562, 2691, 3213 |
| BsuTUI | ATCGAT | 1 cut(s) | 285 |
| BtgI | CCRYGG | 2 cut(s) | 1351, 2686 |
| BtsI | GCAGTG | 2 cut(s) | 1563, 2052 |
| BveI | ACCTGC | 2 cut(s) | 3026, 3097 |
| Cac8I | GCNNGC | 5 cut(s) | 53, 1758, 1899, 2619, 3142 |
| CaiI | CAGNNNCTG | 1 cut(s) | 812 |
| CciI | TCATGA | 2 cut(s) | 2971, 3355 |
| Cfr10I | RCCGGY | 1 cut(s) | 51 |
| Cfr13I | GGNCC | 2 cut(s) | 2549, 3212 |
| ClaI | ATCGAT | 1 cut(s) | 285 |
| CseI | GACGC | 2 cut(s) | 3005, 3429 |
| CsiI | ACCWGGT | 1 cut(s) | 2374 |
| Csp6I | GTAC | 5 cut(s) | 1782, 1923, 2650, 2758, 2848 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 79, 114 |
| CviQI | GTAC | 5 cut(s) | 1782, 1923, 2650, 2758, 2848 |
| DraI | TTTAAA | 1 cut(s) | 2610 |
| DraIII | CACNNNGTG | 1 cut(s) | 3224 |
| EaeI | YGGCCR | 1 cut(s) | 1560 |
| Eam1104I | CTCTTC | 4 cut(s) | 277, 1393, 2125, 2445 |
| EarI | CTCTTC | 4 cut(s) | 277, 1393, 2125, 2445 |
| EciI | GGCGGA | 1 cut(s) | 2255 |
| Ecl136II | GAGCTC | 1 cut(s) | 3044 |
| Eco105I | TACGTA | 1 cut(s) | 2897 |
| Eco130I | CCWWGG | 3 cut(s) | 2426, 2455, 2686 |
| Eco147I | AGGCCT | 1 cut(s) | 960 |
| Eco24I | GRGCYC | 1 cut(s) | 3046 |
| Eco32I | GATATC | 1 cut(s) | 1627 |
| Eco47I | GGWCC | 1 cut(s) | 2549 |
| Eco53kI | GAGCTC | 1 cut(s) | 3044 |
| Eco72I | CACGTG | 1 cut(s) | 1655 |
| Eco81I | CCTNAGG | 2 cut(s) | 511, 2703 |
| Eco88I | CYCGRG | 5 cut(s) | 259, 412, 817, 1105, 1603 |
| Eco91I | GGTNACC | 1 cut(s) | 1346 |
| EcoICRI | GAGCTC | 1 cut(s) | 3044 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 510 |
| EcoO109I | RGGNCCY | 1 cut(s) | 3212 |
| EcoO65I | GGTNACC | 1 cut(s) | 1346 |
| EcoRI | GAATTC | 1 cut(s) | 620 |
| EcoRII | CCWGG | 6 cut(s) | 1717, 1858, 2291, 2374, 2840, 2908 |
| EcoRV | GATATC | 1 cut(s) | 1627 |
| EcoT14I | CCWWGG | 3 cut(s) | 2426, 2455, 2686 |
| EcoT22I | ATGCAT | 2 cut(s) | 2496, 2826 |
| EcoT38I | GRGCYC | 1 cut(s) | 3046 |
| ErhI | CCWWGG | 3 cut(s) | 2426, 2455, 2686 |
| Esp3I | CGTCTC | 1 cut(s) | 3412 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1079, 1111, 2104, 2136 |
| FaqI | GGGAC | 4 cut(s) | 2062, 2945, 3173, 3634 |
| FauI | CCCGC | 1 cut(s) | 2719 |
| FauNDI | CATATG | 2 cut(s) | 1596, 3373 |
| FbaI | TGATCA | 3 cut(s) | 1330, 1987, 2140 |
| FblI | GTMKAC | 2 cut(s) | 87, 1503 |
| FriOI | GRGCYC | 1 cut(s) | 3046 |
| GsaI | CCCAGC | 2 cut(s) | 2084, 2746 |
| GsuI | CTGGAG | 1 cut(s) | 2820 |
| HaeIII | GGCC | 4 cut(s) | 960, 1562, 2691, 3213 |
| HapII | CCGG | 6 cut(s) | 52, 65, 74, 1304, 2552, 2875 |
| HgaI | GACGC | 2 cut(s) | 3005, 3429 |
| HincII | GTYRAC | 2 cut(s) | 2562, 2602 |
| HindII | GTYRAC | 2 cut(s) | 2562, 2602 |
| HpaI | GTTAAC | 1 cut(s) | 2602 |
| HpaII | CCGG | 6 cut(s) | 52, 65, 74, 1304, 2552, 2875 |
| HphI | GGTGA | 9 cut(s) | 199, 950, 1118, 1289, 1358, 1443, 2262, 2989, 3540 |
| HpyCH4IV | ACGT | 5 cut(s) | 204, 1654, 1680, 1821, 2896 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 2635, 3041, 3288, 3308 |
| HpySE526I | ACGT | 5 cut(s) | 204, 1654, 1680, 1821, 2896 |
| KpnI | GGTACC | 2 cut(s) | 1785, 1926 |
| KroI | GCCGGC | 1 cut(s) | 51 |
| KroNI | GCCGGC | 1 cut(s) | 53 |
| Ksp22I | TGATCA | 3 cut(s) | 1330, 1987, 2140 |
| KspAI | GTTAAC | 1 cut(s) | 2602 |
| LguI | GCTCTTC | 1 cut(s) | 277 |
| LweI | GCATC | 5 cut(s) | 230, 237, 2675, 2833, 3107 |
| MabI | ACCWGGT | 1 cut(s) | 2374 |
| MaeII | ACGT | 5 cut(s) | 204, 1654, 1680, 1821, 2896 |
| MaeIII | GTNAC | 9 cut(s) | 200, 1184, 1346, 1650, 1741, 1882, 2892, 3319, 3569 |
| MbiI | CCGCTC | 1 cut(s) | 2726 |
| MflI | RGATCY | 2 cut(s) | 1243, 3235 |
| MhlI | GDGCHC | 2 cut(s) | 158, 3046 |
| MlsI | TGGCCA | 1 cut(s) | 1562 |
| MluNI | TGGCCA | 1 cut(s) | 1562 |
| MlyI | GAGTC | 5 cut(s) | 251, 365, 1097, 3264, 3592 |
| MmeI | TCCRAC | 2 cut(s) | 2527, 3413 |
| Mox20I | TGGCCA | 1 cut(s) | 1562 |
| Mph1103I | ATGCAT | 2 cut(s) | 2496, 2826 |
| MroNI | GCCGGC | 1 cut(s) | 51 |
| MroXI | GAANNNNTTC | 2 cut(s) | 250, 1576 |
| MscI | TGGCCA | 1 cut(s) | 1562 |
| MseI | TTAA | 7 cut(s) | 164, 1181, 2601, 2609, 3072, 3156, 3635 |
| MslI | CAYNNNNRTG | 7 cut(s) | 1131, 1511, 1673, 1968, 2103, 2537, 2658 |
| Msp20I | TGGCCA | 1 cut(s) | 1562 |
| MspA1I | CMGCKG | 2 cut(s) | 1442, 3079 |
| MspCI | CTTAAG | 2 cut(s) | 1180, 3155 |
| MspI | CCGG | 6 cut(s) | 52, 65, 74, 1304, 2552, 2875 |
| MspR9I | CCNGG | 6 cut(s) | 1719, 1860, 2293, 2376, 2842, 2910 |
| Mva1269I | GAATGC | 7 cut(s) | 272, 323, 524, 830, 914, 1016, 3208 |
| MvaI | CCWGG | 6 cut(s) | 1719, 1860, 2293, 2376, 2842, 2910 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 2635, 3041, 3288, 3308 |
| NaeI | GCCGGC | 1 cut(s) | 53 |
| NcoI | CCATGG | 1 cut(s) | 2686 |
| NdeI | CATATG | 2 cut(s) | 1596, 3373 |
| NgoMIV | GCCGGC | 1 cut(s) | 51 |
| NmeAIII | GCCGAG | 1 cut(s) | 3606 |
| NmuCI | GTSAC | 4 cut(s) | 200, 1184, 1346, 1650 |
| NsiI | ATGCAT | 2 cut(s) | 2496, 2826 |
| NspI | RCATGY | 5 cut(s) | 1449, 1756, 1897, 2536, 2621 |
| NspV | TTCGAA | 1 cut(s) | 2003 |
| PaeI | GCATGC | 1 cut(s) | 2621 |
| PagI | TCATGA | 2 cut(s) | 2971, 3355 |
| PaqCI | CACCTGC | 1 cut(s) | 3026 |
| PceI | AGGCCT | 1 cut(s) | 960 |
| PciI | ACATGT | 1 cut(s) | 2532 |
| PciSI | GCTCTTC | 1 cut(s) | 277 |
| PctI | GAATGC | 7 cut(s) | 272, 323, 524, 830, 914, 1016, 3208 |
| PdiI | GCCGGC | 1 cut(s) | 53 |
| PdmI | GAANNNNTTC | 2 cut(s) | 250, 1576 |
| PfoI | TCCNGGA | 2 cut(s) | 1717, 1858 |
| PleI | GAGTC | 5 cut(s) | 251, 364, 1097, 3264, 3591 |
| PmaCI | CACGTG | 1 cut(s) | 1655 |
| PmlI | CACGTG | 1 cut(s) | 1655 |
| PpsI | GAGTC | 5 cut(s) | 251, 364, 1097, 3264, 3591 |
| Ppu21I | YACGTR | 2 cut(s) | 1655, 2897 |
| PscI | ACATGT | 1 cut(s) | 2532 |
| PsiI | TTATAA | 2 cut(s) | 2184, 3063 |
| Psp124BI | GAGCTC | 1 cut(s) | 3046 |
| Psp6I | CCWGG | 6 cut(s) | 1717, 1858, 2291, 2374, 2840, 2908 |
| PspCI | CACGTG | 1 cut(s) | 1655 |
| PspEI | GGTNACC | 1 cut(s) | 1346 |
| PspFI | CCCAGC | 2 cut(s) | 2080, 2742 |
| PspGI | CCWGG | 6 cut(s) | 1717, 1858, 2291, 2374, 2840, 2908 |
| PspPI | GGNCC | 2 cut(s) | 2549, 3212 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3598, 3630 |
| PstI | CTGCAG | 4 cut(s) | 2059, 2592, 3084, 3094 |
| PstNI | CAGNNNCTG | 1 cut(s) | 812 |
| PsuI | RGATCY | 2 cut(s) | 1243, 3235 |
| RsaI | GTAC | 5 cut(s) | 1783, 1924, 2651, 2759, 2849 |
| RsaNI | GTAC | 5 cut(s) | 1782, 1923, 2650, 2758, 2848 |
| RseI | CAYNNNNRTG | 7 cut(s) | 1131, 1511, 1673, 1968, 2103, 2537, 2658 |
| SacI | GAGCTC | 1 cut(s) | 3046 |
| SapI | GCTCTTC | 1 cut(s) | 277 |
| SaqAI | TTAA | 7 cut(s) | 164, 1181, 2601, 2609, 3072, 3156, 3635 |
| Sau96I | GGNCC | 2 cut(s) | 2549, 3212 |
| ScaI | AGTACT | 1 cut(s) | 2849 |
| SchI | GAGTC | 5 cut(s) | 251, 365, 1097, 3264, 3592 |
| ScrFI | CCNGG | 6 cut(s) | 1719, 1860, 2293, 2376, 2842, 2910 |
| SduI | GDGCHC | 2 cut(s) | 158, 3046 |
| SexAI | ACCWGGT | 1 cut(s) | 2374 |
| SfaNI | GCATC | 5 cut(s) | 230, 237, 2675, 2833, 3107 |
| SfcI | CTRYAG | 7 cut(s) | 1260, 2019, 2055, 2588, 3080, 3090, 3207 |
| SfuI | TTCGAA | 1 cut(s) | 2003 |
| SinI | GGWCC | 1 cut(s) | 2549 |
| SmiI | ATTTAAAT | 1 cut(s) | 2610 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 1131, 1511, 1673, 1968, 2103, 2537, 2658 |
| SnaBI | TACGTA | 1 cut(s) | 2897 |
| SpeI | ACTAGT | 1 cut(s) | 31 |
| SphI | GCATGC | 1 cut(s) | 2621 |
| SseBI | AGGCCT | 1 cut(s) | 960 |
| SsiI | CCGC | 6 cut(s) | 1442, 1961, 2240, 2726, 3077, 3233 |
| SstI | GAGCTC | 1 cut(s) | 3046 |
| StuI | AGGCCT | 1 cut(s) | 960 |
| StyD4I | CCNGG | 6 cut(s) | 1717, 1858, 2291, 2374, 2840, 2908 |
| StyI | CCWWGG | 3 cut(s) | 2426, 2455, 2686 |
| SwaI | ATTTAAAT | 1 cut(s) | 2610 |
| TaiI | ACGT | 5 cut(s) | 207, 1657, 1683, 1824, 2899 |
| TaqI | TCGA | 8 cut(s) | 28, 285, 1359, 2003, 2072, 2203, 2389, 3456 |
| TatI | WGTACW | 2 cut(s) | 2757, 2847 |
| TauI | GCSGC | 2 cut(s) | 1445, 3079 |
| Tru1I | TTAA | 7 cut(s) | 164, 1181, 2601, 2609, 3072, 3156, 3635 |
| Tru9I | TTAA | 7 cut(s) | 164, 1181, 2601, 2609, 3072, 3156, 3635 |
| TseFI | GTSAC | 4 cut(s) | 200, 1184, 1346, 1650 |
| Tsp45I | GTSAC | 4 cut(s) | 200, 1184, 1346, 1650 |
| Vha464I | CTTAAG | 2 cut(s) | 1180, 3155 |
| VpaK11BI | GGWCC | 1 cut(s) | 2549 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 510 |
| XapI | RAATTY | 1 cut(s) | 620 |
| XceI | RCATGY | 5 cut(s) | 1449, 1756, 1897, 2536, 2621 |
| XmaJI | CCTAGG | 2 cut(s) | 2426, 2455 |
| XmiI | GTMKAC | 2 cut(s) | 87, 1503 |
| XmnI | GAANNNNTTC | 2 cut(s) | 250, 1576 |
| ZrmI | AGTACT | 1 cut(s) | 2849 |
| Zsp2I | ATGCAT | 2 cut(s) | 2496, 2826 |