Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00804

Orthogroup ID

OG0002425

Physical Location & Seq

Genomic Coordinates Forward (+)

2899 .. 3676

Gene Structure 778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G018150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGGGGACTCAGGTGGAAAAGTGAGGTTGATTCGGTGCCCAAAGTGTGAGAATCTTCTTCCTGAGCTAGCTGATTACTTTGTGTATCAGTGTGGTGGTTGTGGTGCTGTTCTTGGTGCAAAAAAGAAAAGGCAGATGAGTGAGAGTGGCTGTCTCAGGTTCTTGATGGTCATTGCAAACCAATGCCACAAGTCTGTGTTCTTCCTTAGCTACCAGCTTAATTTCAGAATCAAACCCACCTCAGCTATCAATCTTCAAGGTAATAACTCTTTCTTTCACAATTCACATGGTAATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zinc_ribbon_12

Protein Analysis

99

Amino Acids

11.02

Weight (kDa)

9.19

Isoelectric Point (pI)

35.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EDR4-like_1st	PF22910	7 - 40	1.7e-19	Enhanced disease resistance 4-like, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05190
fragaria_vesca	FvH4_7g26160
malus_domestica	MD01G1169800.v1.1 MD01G1169900.v1.1 MD07G1235500.v1.1
prunus_persica	Prupe.2G265800_v2.0.a1 Prupe.2G265800_v2.0.a1 Prupe.2G265800_v2.0.a1 Prupe.4G213000_v2.0.a1 Prupe.4G213000_v2.0.a1 Prupe.4G213000_v2.0.a1 Prupe.4G213000_v2.0.a1 Prupe.4G213000_v2.0.a1
pyrus_communis	pycom01g18250 pycom01g18260 pycom07g21310
rosa_chinensis	RchiOBHm_Chr1g0372591 RchiOBHm_Chr4g0399021 RchiOBHm_Chr5g0049731 RchiOBHm_Chr7g0243711
rosa_laevigata	RLG00000001030 RLG00000008808 RLG00000010509 RLG00000026888
rosa_multiflora	Rmu_ssc0000419.1_g000010
rosa_roxburghii	Rroxscaffold_7G00208520
rosa_rugosa	Rorug01G0066000 Rorug01G0373300
rosa_samantha	Rh1AG381600 Rh1BG345000 Rh1CG358400 Rh1DG376200 Rh2BG091800 Rh3DG186100 Rh4DG129900 Rh5AG465400 Rh7AG476000
rosa_wichuraiana	Rw0G018150 Rw1G033560 Rw2G022780 Rw7G041610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	36
AgsI	TTSAA	1 cut(s)	257
AluBI	AGCT	5 cut(s)	67, 71, 210, 217, 245
AluI	AGCT	5 cut(s)	67, 71, 210, 217, 245
Alw26I	GTCTC	1 cut(s)	158
AsuNHI	GCTAGC	1 cut(s)	67
BaeGI	GKGCMC	1 cut(s)	41
BanI	GGYRCC	1 cut(s)	36
BbvCI	CCTCAGC	1 cut(s)	241
BccI	CCATC	1 cut(s)	160
BcoDI	GTCTC	1 cut(s)	158
BfaI	CTAG	1 cut(s)	68
BmiI	GGNNCC	1 cut(s)	38
BmtI	GCTAGC	1 cut(s)	71
Bpu10I	CCTNAGC	3 cut(s)	63, 206, 241
Bse3DI	GCAATG	1 cut(s)	171
BseMI	GCAATG	1 cut(s)	171
BseMII	CTCAG	4 cut(s)	24, 54, 169, 255
BseSI	GKGCMC	1 cut(s)	41
BshNI	GGYRCC	1 cut(s)	36
BslFI	GGGAC	1 cut(s)	20
BsmAI	GTCTC	1 cut(s)	158
BsmFI	GGGAC	1 cut(s)	20
Bsp1286I	GDGCHC	1 cut(s)	41
BspCNI	CTCAG	4 cut(s)	23, 55, 168, 254
BspLI	GGNNCC	1 cut(s)	38
BspOI	GCTAGC	1 cut(s)	71
BspT107I	GGYRCC	1 cut(s)	36
BsrDI	GCAATG	1 cut(s)	171
BstC8I	GCNNGC	1 cut(s)	69
BstDEI	CTNAG	5 cut(s)	10, 63, 155, 206, 241
BstMAI	GTCTC	1 cut(s)	158
BstSLI	GKGCMC	1 cut(s)	41
BtsIMutI	CAGTG	1 cut(s)	95
Cac8I	GCNNGC	1 cut(s)	69
CviAII	CATG	1 cut(s)	287
CviJI	RGCY	6 cut(s)	67, 71, 150, 210, 217, 245
CviKI_1	RGCY	6 cut(s)	67, 71, 150, 210, 217, 245
DdeI	CTNAG	5 cut(s)	10, 63, 155, 206, 241
FaeI	CATG	1 cut(s)	290
FaiI	YATR	1 cut(s)	288
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	1 cut(s)	286
FspBI	CTAG	1 cut(s)	68
Hin1II	CATG	1 cut(s)	290
HinfI	GANTC	4 cut(s)	8, 31, 52, 228
Hpy188I	TCNGA	1 cut(s)	227
Hpy188III	TCNNGA	2 cut(s)	62, 163
HpyCH4V	TGCA	2 cut(s)	119, 176
HpyF3I	CTNAG	5 cut(s)	10, 63, 155, 206, 241
Hsp92II	CATG	1 cut(s)	290
LpnPI	CCDG	3 cut(s)	75, 142, 227
MaeI	CTAG	1 cut(s)	68
MboII	GAAGA	4 cut(s)	47, 50, 193, 245
MhlI	GDGCHC	1 cut(s)	41
MluCI	AATT	2 cut(s)	220, 280
MlyI	GAGTC	1 cut(s)	2
MnlI	CCTC	2 cut(s)	18, 250
MseI	TTAA	2 cut(s)	219, 298
MslI	CAYNNNNRTG	1 cut(s)	291
NheI	GCTAGC	1 cut(s)	67
NlaIII	CATG	1 cut(s)	290
NlaIV	GGNNCC	1 cut(s)	38
PfeI	GAWTC	3 cut(s)	31, 52, 228
PleI	GAGTC	1 cut(s)	2
PpsI	GAGTC	1 cut(s)	2
PspN4I	GGNNCC	1 cut(s)	38
RseI	CAYNNNNRTG	1 cut(s)	291
SaqAI	TTAA	2 cut(s)	219, 298
SchI	GAGTC	1 cut(s)	2
SduI	GDGCHC	1 cut(s)	41
SgeI	CNNG	9 cut(s)	24, 74, 80, 125, 169, 175, 202, 226, 269
SmiMI	CAYNNNNRTG	1 cut(s)	291
Sse9I	AATT	2 cut(s)	220, 280
SspMI	CTAG	1 cut(s)	68
TasI	AATT	2 cut(s)	220, 280
TfiI	GAWTC	3 cut(s)	31, 52, 228
Tru1I	TTAA	2 cut(s)	219, 298
Tru9I	TTAA	2 cut(s)	219, 298
TscAI	CASTG	1 cut(s)	95
TspRI	CASTG	1 cut(s)	95
XspI	CTAG	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.