Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0002425

Physical Location & Seq

Genomic Coordinates Forward (+)

65049759 .. 65052431

Gene Structure 2673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G041610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGACGGCGCTTAAATGGGTCACCAGGTGCTGCCCCGAGATTCCCAGAAGCCTTGTTCAGAAGCTCTTTCGCTTAAGACAGGAGCAGGATGACAAGAAGGCCCCTGACTCTGCTGCTAAAGTCAAAGGCGAATCAGTCAAGAAGGGATATGTTGGAATTCACATCTCAGGATTCAGAGATATCCTTTTAAGGCTGGAGCTTGTACGCCTGATTGTGGACTCAATATTTGAGCATCCTTTTGAAGTACAAGGATTACAGATTGTGACTGGGATTACAGATGGATGGAGCACCCAGCTCATGCAAGAACTTCGAGACATCCCTTGGATCAGTCGTTGGCTACATATGGAGACCATTCAGTCCTGCGCAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 ko05164 map03013 map03015 map03040 map05164

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

123

Amino Acids

14.19

Weight (kDa)

8.52

Isoelectric Point (pI)

44.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05190
fragaria_vesca	FvH4_7g26160
malus_domestica	MD01G1169800.v1.1 MD01G1169900.v1.1 MD07G1235500.v1.1
prunus_persica	Prupe.2G265800_v2.0.a1 Prupe.2G265800_v2.0.a1 Prupe.2G265800_v2.0.a1 Prupe.4G213000_v2.0.a1 Prupe.4G213000_v2.0.a1 Prupe.4G213000_v2.0.a1 Prupe.4G213000_v2.0.a1 Prupe.4G213000_v2.0.a1
pyrus_communis	pycom01g18250 pycom01g18260 pycom07g21310
rosa_chinensis	RchiOBHm_Chr1g0372591 RchiOBHm_Chr4g0399021 RchiOBHm_Chr5g0049731 RchiOBHm_Chr7g0243711
rosa_laevigata	RLG00000001030 RLG00000008808 RLG00000010509 RLG00000026888
rosa_multiflora	Rmu_ssc0000419.1_g000010
rosa_roxburghii	Rroxscaffold_7G00208520
rosa_rugosa	Rorug01G0066000 Rorug01G0373300
rosa_samantha	Rh1AG381600 Rh1BG345000 Rh1CG358400 Rh1DG376200 Rh2BG091800 Rh3DG186100 Rh4DG129900 Rh5AG465400 Rh7AG476000
rosa_wichuraiana	Rw0G018150 Rw1G033560 Rw2G022780 Rw7G041610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	355
Acc16I	TGCGCA	1 cut(s)	364
AclWI	GGATC	1 cut(s)	332
AcsI	RAATTY	1 cut(s)	156
AdeI	CACNNNGTG	1 cut(s)	27
AfaI	GTAC	2 cut(s)	204, 246
AfiI	CCNNNNNNNGG	1 cut(s)	214
AflII	CTTAAG	1 cut(s)	73
AgsI	TTSAA	1 cut(s)	242
AjnI	CCWGG	1 cut(s)	23
AluBI	AGCT	3 cut(s)	64, 199, 295
AluI	AGCT	3 cut(s)	64, 199, 295
Alw21I	GWGCWC	1 cut(s)	290
Alw26I	GTCTC	2 cut(s)	306, 341
AlwI	GGATC	1 cut(s)	332
AlwNI	CAGNNNCTG	1 cut(s)	30
Ama87I	CYCGRG	1 cut(s)	35
AoxI	GGCC	1 cut(s)	99
ApeKI	GCWGC	2 cut(s)	30, 113
ApoI	RAATTY	1 cut(s)	156
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
AspLEI	GCGC	2 cut(s)	10, 365
AspS9I	GGNCC	1 cut(s)	100
AsuHPI	GGTGA	1 cut(s)	13
AvaI	CYCGRG	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	290
BbvI	GCAGC	2 cut(s)	17, 100
BccI	CCATC	2 cut(s)	272, 276
BceAI	ACGGC	1 cut(s)	21
BcgI	CGANNNNNNTGC	2 cut(s)	290, 324
BciT130I	CCWGG	1 cut(s)	25
BcoDI	GTCTC	2 cut(s)	306, 341
BfoI	RGCGCY	1 cut(s)	11
BfrI	CTTAAG	1 cut(s)	73
BisI	GCNGC	2 cut(s)	31, 114
BlsI	GCNGC	2 cut(s)	32, 115
Bme1390I	CCNGG	1 cut(s)	25
BmeT110I	CYCGRG	1 cut(s)	35
BmgT120I	GGNCC	1 cut(s)	100
BmiI	GGNNCC	1 cut(s)	102
BmrFI	CCNGG	1 cut(s)	25
BmrI	ACTGGG	1 cut(s)	276
BmsI	GCATC	1 cut(s)	241
BmuI	ACTGGG	1 cut(s)	276
BpmI	CTGGAG	1 cut(s)	215
BsaI	GGTCTC	1 cut(s)	341
BsaJI	CCNNGG	1 cut(s)	320
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
Bse1I	ACTGG	1 cut(s)	271
BseBI	CCWGG	1 cut(s)	25
BseDI	CCNNGG	1 cut(s)	320
BseGI	GGATG	4 cut(s)	94, 232, 287, 315
BseLI	CCNNNNNNNGG	1 cut(s)	214
BseMII	CTCAG	1 cut(s)	180
BseNI	ACTGG	1 cut(s)	271
BseXI	GCAGC	2 cut(s)	17, 100
BseYI	CCCAGC	1 cut(s)	291
BshFI	GGCC	1 cut(s)	101
BsiHKAI	GWGCWC	1 cut(s)	290
BsiHKCI	CYCGRG	1 cut(s)	35
BslI	CCNNNNNNNGG	1 cut(s)	214
BsmAI	GTCTC	2 cut(s)	306, 341
BsnI	GGCC	1 cut(s)	101
Bso31I	GGTCTC	1 cut(s)	341
BsoBI	CYCGRG	1 cut(s)	35
Bsp1286I	GDGCHC	1 cut(s)	290
Bsp143I	GATC	1 cut(s)	324
BspANI	GGCC	1 cut(s)	101
BspCNI	CTCAG	1 cut(s)	179
BspLI	GGNNCC	1 cut(s)	102
BspPI	GGATC	1 cut(s)	332
BspTI	CTTAAG	1 cut(s)	73
BspTNI	GGTCTC	1 cut(s)	341
BsrI	ACTGG	1 cut(s)	271
BssECI	CCNNGG	1 cut(s)	320
BssMI	GATC	1 cut(s)	324
BssT1I	CCWWGG	1 cut(s)	320
Bst2UI	CCWGG	1 cut(s)	25
BstAFI	CTTAAG	1 cut(s)	73
BstDEI	CTNAG	1 cut(s)	166
BstEII	GGTNACC	1 cut(s)	19
BstF5I	GGATG	4 cut(s)	94, 232, 287, 315
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	2 cut(s)	10, 365
BstKTI	GATC	1 cut(s)	327
BstMAI	GTCTC	2 cut(s)	306, 341
BstMBI	GATC	1 cut(s)	324
BstNI	CCWGG	1 cut(s)	25
BstPI	GGTNACC	1 cut(s)	19
BstSCI	CCNGG	1 cut(s)	23
BstV1I	GCAGC	2 cut(s)	17, 100
BsuRI	GGCC	1 cut(s)	101
BtsCI	GGATG	4 cut(s)	94, 232, 287, 315
CaiI	CAGNNNCTG	1 cut(s)	30
CfoI	GCGC	2 cut(s)	10, 365
Cfr13I	GGNCC	1 cut(s)	100
CsiI	ACCWGGT	1 cut(s)	23
Csp6I	GTAC	2 cut(s)	203, 245
CviAII	CATG	1 cut(s)	298
CviJI	RGCY	7 cut(s)	51, 64, 101, 193, 199, 295, 337
CviKI_1	RGCY	7 cut(s)	51, 64, 101, 193, 199, 295, 337
CviQI	GTAC	2 cut(s)	203, 245
DdeI	CTNAG	1 cut(s)	166
DpnI	GATC	1 cut(s)	326
DpnII	GATC	1 cut(s)	324
DraIII	CACNNNGTG	1 cut(s)	27
DrdI	GACNNNNNNGTC	1 cut(s)	355
DseDI	GACNNNNNNGTC	1 cut(s)	355
Eco130I	CCWWGG	1 cut(s)	320
Eco31I	GGTCTC	1 cut(s)	341
Eco32I	GATATC	1 cut(s)	181
Eco88I	CYCGRG	1 cut(s)	35
Eco91I	GGTNACC	1 cut(s)	19
EcoO109I	RGGNCCY	1 cut(s)	100
EcoO65I	GGTNACC	1 cut(s)	19
EcoRI	GAATTC	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	23
EcoRV	GATATC	1 cut(s)	181
EcoT14I	CCWWGG	1 cut(s)	320
ErhI	CCWWGG	1 cut(s)	320
FaeI	CATG	1 cut(s)	301
FaiI	YATR	4 cut(s)	150, 299, 342, 344
FatI	CATG	1 cut(s)	297
FauNDI	CATATG	1 cut(s)	342
Fnu4HI	GCNGC	2 cut(s)	31, 114
FokI	GGATG	4 cut(s)	101, 219, 294, 302
Fsp4HI	GCNGC	2 cut(s)	31, 114
FspI	TGCGCA	1 cut(s)	364
GlaI	GCGC	2 cut(s)	9, 364
GluI	GCNGC	2 cut(s)	31, 114
GsaI	CCCAGC	1 cut(s)	295
GsuI	CTGGAG	1 cut(s)	215
HaeII	RGCGCY	1 cut(s)	11
HaeIII	GGCC	1 cut(s)	101
HhaI	GCGC	2 cut(s)	10, 365
Hin1II	CATG	1 cut(s)	301
Hin6I	GCGC	2 cut(s)	8, 363
HinP1I	GCGC	2 cut(s)	8, 363
HinfI	GANTC	5 cut(s)	40, 107, 131, 171, 218
HphI	GGTGA	1 cut(s)	13
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188I	TCNGA	2 cut(s)	60, 176
Hpy188III	TCNNGA	3 cut(s)	139, 168, 311
Hpy8I	GTNNAC	1 cut(s)	217
HpyAV	CCTTC	2 cut(s)	91, 136
HpyCH4V	TGCA	1 cut(s)	301
HpyF3I	CTNAG	1 cut(s)	166
Hsp92II	CATG	1 cut(s)	301
HspAI	GCGC	2 cut(s)	8, 363
Kzo9I	GATC	1 cut(s)	324
LmnI	GCTCC	3 cut(s)	82, 196, 285
Lsp1109I	GCAGC	2 cut(s)	17, 100
LweI	GCATC	1 cut(s)	241
MabI	ACCWGGT	1 cut(s)	23
MaeIII	GTNAC	2 cut(s)	19, 262
MalI	GATC	1 cut(s)	326
MboI	GATC	1 cut(s)	324
MhlI	GDGCHC	1 cut(s)	290
MluCI	AATT	2 cut(s)	156, 366
MlyI	GAGTC	2 cut(s)	101, 212
MmeI	TCCRAC	1 cut(s)	133
MseI	TTAA	4 cut(s)	12, 74, 188, 370
MspCI	CTTAAG	1 cut(s)	73
MspR9I	CCNGG	1 cut(s)	25
MvaI	CCWGG	1 cut(s)	25
NdeI	CATATG	1 cut(s)	342
NdeII	GATC	1 cut(s)	324
NlaIII	CATG	1 cut(s)	301
NlaIV	GGNNCC	1 cut(s)	102
NmuCI	GTSAC	2 cut(s)	19, 262
NsbI	TGCGCA	1 cut(s)	364
PfeI	GAWTC	3 cut(s)	40, 131, 171
PkrI	GCNGC	2 cut(s)	32, 115
PleI	GAGTC	2 cut(s)	101, 212
PpsI	GAGTC	2 cut(s)	101, 212
Psp6I	CCWGG	1 cut(s)	23
PspEI	GGTNACC	1 cut(s)	19
PspFI	CCCAGC	1 cut(s)	291
PspGI	CCWGG	1 cut(s)	23
PspN4I	GGNNCC	1 cut(s)	102
PspPI	GGNCC	1 cut(s)	100
PstNI	CAGNNNCTG	1 cut(s)	30
RsaI	GTAC	2 cut(s)	204, 246
RsaNI	GTAC	2 cut(s)	203, 245
SaqAI	TTAA	4 cut(s)	12, 74, 188, 370
SatI	GCNGC	2 cut(s)	31, 114
Sau3AI	GATC	1 cut(s)	324
Sau96I	GGNCC	1 cut(s)	100
SchI	GAGTC	2 cut(s)	101, 212
ScrFI	CCNGG	1 cut(s)	25
SduI	GDGCHC	1 cut(s)	290
SetI	ASST	4 cut(s)	29, 66, 201, 297
SexAI	ACCWGGT	1 cut(s)	23
SfaNI	GCATC	1 cut(s)	241
SmlI	CTYRAG	1 cut(s)	73
SmoI	CTYRAG	1 cut(s)	73
Sse9I	AATT	2 cut(s)	156, 366
SspI	AATATT	1 cut(s)	225
StyD4I	CCNGG	1 cut(s)	23
StyI	CCWWGG	1 cut(s)	320
TaqI	TCGA	1 cut(s)	310
TasI	AATT	2 cut(s)	156, 366
TatI	WGTACW	1 cut(s)	244
TfiI	GAWTC	3 cut(s)	40, 131, 171
Tru1I	TTAA	4 cut(s)	12, 74, 188, 370
Tru9I	TTAA	4 cut(s)	12, 74, 188, 370
TseFI	GTSAC	2 cut(s)	19, 262
TseI	GCWGC	2 cut(s)	30, 113
Tsp45I	GTSAC	2 cut(s)	19, 262
Vha464I	CTTAAG	1 cut(s)	73
XapI	RAATTY	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.