RLG00000008808

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0002425
Physical Location & Seq
Reverse (-)
39726018 .. 39728884
2867 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008808

Sequence Viewer

Length: 444 bp
ATGGCTGTATTGATTTTCATTGCAGACTTGCAGTCATGCAGTCATATTCTCCGGCTTTCCCCATCCAAGCTTGCTTTGTTTTCTGATTTGCTCCAAACGGGAGCAAAAAAGAAAAGGCAGATGAGTGGGAGTGGGTGTCTCAGGTTCTTGATGGTCGTTGCAAACCAATGCCACACGTCTATGTTCTTCCTTAGCTACCAGTTTAATTTCAGAATCAAACCCACCTCAGCTATCAATCTTCACAAGTTGGGTAGAGAGTGGGAGACTTTGAAAGGAAAAGAGGACCAATCGATCTGGATTCGTTTGGGTAGAAGTGCAGAGACGGAGAGAGATTGTGGAAGGAGAAGAGCAGGAATCGGTGTTGGTTTGGTTGGGAAGAGGTGGGTGCGAATATTTGGATCCAGTTTCAGCAAAAGCAAACTTCCAGAGTTAATCTTTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.68

Weight (kDa)

10.44

Isoelectric Point (pI)

56.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 393, 406
AflIII ACRYGT 1 cut(s) 174
AgsI TTSAA 1 cut(s) 271
AhdI GACNNNNNGTC 1 cut(s) 31
AjiI CACGTC 1 cut(s) 177
AluBI AGCT 3 cut(s) 70, 195, 230
AluI AGCT 3 cut(s) 70, 195, 230
Alw26I GTCTC 3 cut(s) 143, 257, 314
AlwI GGATC 2 cut(s) 393, 406
AspS9I GGNCC 1 cut(s) 283
AvaII GGWCC 1 cut(s) 283
BamHI GGATCC 1 cut(s) 398
BbvCI CCTCAGC 1 cut(s) 226
BccI CCATC 2 cut(s) 70, 145
BcoDI GTCTC 3 cut(s) 143, 257, 314
Bme18I GGWCC 1 cut(s) 283
BmeRI GACNNNNNGTC 1 cut(s) 31
BmgBI CACGTC 1 cut(s) 177
BmgT120I GGNCC 1 cut(s) 283
BmiI GGNNCC 1 cut(s) 400
Bpu10I CCTNAGC 2 cut(s) 191, 226
Bsa29I ATCGAT 1 cut(s) 290
BsaXI ACNNNNNCTCC 2 cut(s) 121, 151
Bse1I ACTGG 2 cut(s) 199, 402
Bse3DI GCAATG 1 cut(s) 18
BseCI ATCGAT 1 cut(s) 290
BseGI GGATG 1 cut(s) 62
BseMI GCAATG 1 cut(s) 18
BseMII CTCAG 2 cut(s) 154, 240
BseNI ACTGG 2 cut(s) 199, 402
BsgI GTGCAG 1 cut(s) 336
BshVI ATCGAT 1 cut(s) 290
BsiSI CCGG 1 cut(s) 52
BsmAI GTCTC 3 cut(s) 143, 257, 314
BsmBI CGTCTC 1 cut(s) 314
Bsp143I GATC 2 cut(s) 291, 398
BspCNI CTCAG 2 cut(s) 153, 239
BspDI ATCGAT 1 cut(s) 290
BspLI GGNNCC 1 cut(s) 400
BspPI GGATC 2 cut(s) 393, 406
BspQI GCTCTTC 1 cut(s) 340
BsrDI GCAATG 1 cut(s) 18
BsrI ACTGG 2 cut(s) 199, 402
BssMI GATC 2 cut(s) 291, 398
Bst6I CTCTTC 2 cut(s) 340, 371
BstC8I GCNNGC 1 cut(s) 72
BstDEI CTNAG 3 cut(s) 140, 191, 226
BstF5I GGATG 1 cut(s) 62
BstKTI GATC 2 cut(s) 294, 401
BstMAI GTCTC 3 cut(s) 143, 257, 314
BstMBI GATC 2 cut(s) 291, 398
BstX2I RGATCY 1 cut(s) 398
BstYI RGATCY 1 cut(s) 398
Bsu15I ATCGAT 1 cut(s) 290
BsuTUI ATCGAT 1 cut(s) 290
BtrI CACGTC 1 cut(s) 177
BtsCI GGATG 1 cut(s) 62
Cac8I GCNNGC 1 cut(s) 72
Cfr13I GGNCC 1 cut(s) 283
ClaI ATCGAT 1 cut(s) 290
CviAII CATG 1 cut(s) 36
CviJI RGCY 5 cut(s) 5, 55, 70, 195, 230
CviKI_1 RGCY 5 cut(s) 5, 55, 70, 195, 230
DdeI CTNAG 3 cut(s) 140, 191, 226
DpnI GATC 2 cut(s) 293, 400
DpnII GATC 2 cut(s) 291, 398
DriI GACNNNNNGTC 1 cut(s) 31
Eam1104I CTCTTC 2 cut(s) 340, 371
Eam1105I GACNNNNNGTC 1 cut(s) 31
EarI CTCTTC 2 cut(s) 340, 371
Eco47I GGWCC 1 cut(s) 283
Esp3I CGTCTC 1 cut(s) 314
FaeI CATG 1 cut(s) 39
FaiI YATR 4 cut(s) 37, 45, 182, 440
FatI CATG 1 cut(s) 35
FokI GGATG 1 cut(s) 49
HapII CCGG 1 cut(s) 52
Hin1II CATG 1 cut(s) 39
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 3 cut(s) 213, 298, 354
HpaII CCGG 1 cut(s) 52
Hpy188I TCNGA 2 cut(s) 85, 212
Hpy188III TCNNGA 3 cut(s) 148, 295, 425
HpyAV CCTTC 1 cut(s) 333
HpyCH4IV ACGT 1 cut(s) 176
HpyCH4V TGCA 5 cut(s) 23, 31, 39, 161, 317
HpyF3I CTNAG 3 cut(s) 140, 191, 226
HpySE526I ACGT 1 cut(s) 176
Hsp92II CATG 1 cut(s) 39
Kzo9I GATC 2 cut(s) 291, 398
LguI GCTCTTC 1 cut(s) 340
LmnI GCTCC 2 cut(s) 96, 101
LpnPI CCDG 7 cut(s) 65, 127, 212, 280, 336, 415, 438
MaeII ACGT 1 cut(s) 176
MalI GATC 2 cut(s) 293, 400
MboI GATC 2 cut(s) 291, 398
MboII GAAGA 4 cut(s) 178, 230, 357, 388
MflI RGATCY 1 cut(s) 398
MluCI AATT 1 cut(s) 205
MnlI CCTC 3 cut(s) 235, 274, 372
MseI TTAA 2 cut(s) 204, 431
MslI CAYNNNNRTG 1 cut(s) 179
MspI CCGG 1 cut(s) 52
NdeII GATC 2 cut(s) 291, 398
NlaIII CATG 1 cut(s) 39
NlaIV GGNNCC 1 cut(s) 400
PciSI GCTCTTC 1 cut(s) 340
PfeI GAWTC 3 cut(s) 213, 298, 354
PspN4I GGNNCC 1 cut(s) 400
PspPI GGNCC 1 cut(s) 283
PsuI RGATCY 1 cut(s) 398
RseI CAYNNNNRTG 1 cut(s) 179
SapI GCTCTTC 1 cut(s) 340
SaqAI TTAA 2 cut(s) 204, 431
Sau3AI GATC 2 cut(s) 291, 398
Sau96I GGNCC 1 cut(s) 283
SetI ASST 7 cut(s) 72, 146, 179, 197, 227, 232, 383
SinI GGWCC 1 cut(s) 283
SmiMI CAYNNNNRTG 1 cut(s) 179
Sse9I AATT 1 cut(s) 205
SspI AATATT 1 cut(s) 393
TaiI ACGT 1 cut(s) 179
TaqI TCGA 1 cut(s) 290
TasI AATT 1 cut(s) 205
TfiI GAWTC 3 cut(s) 213, 298, 354
Tru1I TTAA 2 cut(s) 204, 431
Tru9I TTAA 2 cut(s) 204, 431
TspDTI ATGAA 1 cut(s) 7
TspGWI ACGGA 1 cut(s) 338
VpaK11BI GGWCC 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.