Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002425

Physical Location & Seq

Genomic Coordinates Reverse (-)

21508559 .. 21519341

Gene Structure 10783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG129900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGATGTGTTGATTTTCATTGCAGACTTGCAGTCATGCAGTCATATTCTCCGGCTTTCCCCATCCAAGCTTGCTTTGTTTTCTGATTTTCTCCAAACGGGAGCAAAAAAGAAAAGGCAGATGAGTGGGAGTGGGTGTCTCAGGGCCATTTGTCTTTGCTCAGATAATTTAGCTGCGAACTTCAGCAGGGAGCTGGCTGACTATATTATTTACATCATAGATGTATCAGGTGGTGATAAAATTCCACTACAAGATGGCCCTGGCATCACTCAAGCTGACCTTCTGGTTGATCGATGCTGGAAAGAATCCTCAAGGGATCTCATAAACAGCTGCAATGCCAAAAATCAGATCACTAAAGGCAAAATTGATACCTTCAAGAGTTTACGAGAGCATCAACTGGAAGAACAAGCCAGGCATTTCCTAATGAAGTTGAATCGGATAGAGAAATACGAGCTGCTGCTTCTGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006807 GO:0008150 GO:0008152 GO:0043085 GO:0044093 GO:0050790 GO:0065007 GO:0065009

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

cobW

Protein Analysis

156

Amino Acids

17.62

Weight (kDa)

8.21

Isoelectric Point (pI)

45.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05190
fragaria_vesca	FvH4_7g26160
malus_domestica	MD01G1169800.v1.1 MD01G1169900.v1.1 MD07G1235500.v1.1
prunus_persica	Prupe.2G265800_v2.0.a1 Prupe.2G265800_v2.0.a1 Prupe.2G265800_v2.0.a1 Prupe.4G213000_v2.0.a1 Prupe.4G213000_v2.0.a1 Prupe.4G213000_v2.0.a1 Prupe.4G213000_v2.0.a1 Prupe.4G213000_v2.0.a1
pyrus_communis	pycom01g18250 pycom01g18260 pycom07g21310
rosa_chinensis	RchiOBHm_Chr1g0372591 RchiOBHm_Chr4g0399021 RchiOBHm_Chr5g0049731 RchiOBHm_Chr7g0243711
rosa_laevigata	RLG00000001030 RLG00000008808 RLG00000010509 RLG00000026888
rosa_multiflora	Rmu_ssc0000419.1_g000010
rosa_roxburghii	Rroxscaffold_7G00208520
rosa_rugosa	Rorug01G0066000 Rorug01G0373300
rosa_samantha	Rh1AG381600 Rh1BG345000 Rh1CG358400 Rh1DG376200 Rh2BG091800 Rh3DG186100 Rh4DG129900 Rh5AG465400 Rh7AG476000
rosa_wichuraiana	Rw0G018150 Rw1G033560 Rw2G022780 Rw7G041610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	324
AcsI	RAATTY	1 cut(s)	240
AcuI	CTGAAG	1 cut(s)	166
AgsI	TTSAA	2 cut(s)	376, 433
AhdI	GACNNNNNGTC	1 cut(s)	31
AjnI	CCWGG	2 cut(s)	259, 410
AluBI	AGCT	6 cut(s)	70, 173, 193, 275, 330, 454
AluI	AGCT	6 cut(s)	70, 173, 193, 275, 330, 454
Alw26I	GTCTC	1 cut(s)	143
AlwI	GGATC	1 cut(s)	324
AoxI	GGCC	2 cut(s)	144, 256
ApeKI	GCWGC	4 cut(s)	173, 330, 454, 457
ApoI	RAATTY	1 cut(s)	240
AspS9I	GGNCC	2 cut(s)	144, 257
AsuHPI	GGTGA	1 cut(s)	245
BbvI	GCAGC	4 cut(s)	160, 317, 441, 444
BccI	CCATC	2 cut(s)	70, 248
BciT130I	CCWGG	2 cut(s)	261, 412
BcoDI	GTCTC	1 cut(s)	143
BisI	GCNGC	4 cut(s)	174, 331, 455, 458
BlsI	GCNGC	4 cut(s)	175, 332, 456, 459
Bme1390I	CCNGG	2 cut(s)	261, 412
BmeRI	GACNNNNNGTC	1 cut(s)	31
BmgT120I	GGNCC	2 cut(s)	144, 257
BmrFI	CCNGG	2 cut(s)	261, 412
BmsI	GCATC	3 cut(s)	273, 284, 400
BpuEI	CTTGAG	2 cut(s)	255, 295
Bsa29I	ATCGAT	1 cut(s)	292
BsaJI	CCNNGG	1 cut(s)	259
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bse1I	ACTGG	1 cut(s)	402
Bse3DI	GCAATG	2 cut(s)	18, 340
BseBI	CCWGG	2 cut(s)	261, 412
BseCI	ATCGAT	1 cut(s)	292
BseDI	CCNNGG	1 cut(s)	259
BseGI	GGATG	2 cut(s)	10, 62
BseMI	GCAATG	2 cut(s)	18, 340
BseMII	CTCAG	2 cut(s)	154, 174
BseNI	ACTGG	1 cut(s)	402
BseXI	GCAGC	4 cut(s)	160, 317, 441, 444
BshFI	GGCC	2 cut(s)	146, 258
BshVI	ATCGAT	1 cut(s)	292
BsiSI	CCGG	1 cut(s)	52
BsmAI	GTCTC	1 cut(s)	143
BsnI	GGCC	2 cut(s)	146, 258
Bsp143I	GATC	3 cut(s)	289, 316, 348
BspANI	GGCC	2 cut(s)	146, 258
BspCNI	CTCAG	2 cut(s)	153, 173
BspDI	ATCGAT	1 cut(s)	292
BspPI	GGATC	1 cut(s)	324
BsrDI	GCAATG	2 cut(s)	18, 340
BsrI	ACTGG	1 cut(s)	402
BssECI	CCNNGG	1 cut(s)	259
BssMI	GATC	3 cut(s)	289, 316, 348
Bst2UI	CCWGG	2 cut(s)	261, 412
BstC8I	GCNNGC	2 cut(s)	72, 195
BstDEI	CTNAG	2 cut(s)	140, 160
BstF5I	GGATG	2 cut(s)	10, 62
BstKTI	GATC	3 cut(s)	292, 319, 351
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	3 cut(s)	289, 316, 348
BstMWI	GCNNNNNNNGC	1 cut(s)	463
BstNI	CCWGG	2 cut(s)	261, 412
BstSCI	CCNGG	2 cut(s)	259, 410
BstV1I	GCAGC	4 cut(s)	160, 317, 441, 444
BstX2I	RGATCY	1 cut(s)	316
BstYI	RGATCY	1 cut(s)	316
Bsu15I	ATCGAT	1 cut(s)	292
BsuRI	GGCC	2 cut(s)	146, 258
BsuTUI	ATCGAT	1 cut(s)	292
BtsCI	GGATG	2 cut(s)	10, 62
Cac8I	GCNNGC	2 cut(s)	72, 195
Cfr13I	GGNCC	2 cut(s)	144, 257
ClaI	ATCGAT	1 cut(s)	292
CviAII	CATG	1 cut(s)	36
DdeI	CTNAG	2 cut(s)	140, 160
DpnI	GATC	3 cut(s)	291, 318, 350
DpnII	GATC	3 cut(s)	289, 316, 348
DriI	GACNNNNNGTC	1 cut(s)	31
Eam1105I	GACNNNNNGTC	1 cut(s)	31
Eco57I	CTGAAG	1 cut(s)	166
EcoRII	CCWGG	2 cut(s)	259, 410
FaeI	CATG	1 cut(s)	39
FaiI	YATR	6 cut(s)	37, 45, 204, 218, 323, 469
FalI	AAGNNNNNCTT	2 cut(s)	264, 296
FatI	CATG	1 cut(s)	35
Fnu4HI	GCNGC	4 cut(s)	174, 331, 455, 458
FokI	GGATG	2 cut(s)	17, 49
Fsp4HI	GCNGC	4 cut(s)	174, 331, 455, 458
GluI	GCNGC	4 cut(s)	174, 331, 455, 458
HaeIII	GGCC	2 cut(s)	146, 258
HapII	CCGG	1 cut(s)	52
Hin1II	CATG	1 cut(s)	39
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	2 cut(s)	305, 433
HpaII	CCGG	1 cut(s)	52
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	1 cut(s)	383
Hpy188I	TCNGA	4 cut(s)	85, 163, 348, 438
Hpy188III	TCNNGA	1 cut(s)	376
Hpy8I	GTNNAC	1 cut(s)	383
HpyAV	CCTTC	2 cut(s)	290, 382
HpyCH4V	TGCA	4 cut(s)	23, 31, 39, 333
HpyF10VI	GCNNNNNNNGC	1 cut(s)	463
HpyF3I	CTNAG	2 cut(s)	140, 160
Hsp92II	CATG	1 cut(s)	39
Kzo9I	GATC	3 cut(s)	289, 316, 348
LmnI	GCTCC	2 cut(s)	101, 190
Lsp1109I	GCAGC	4 cut(s)	160, 317, 441, 444
LweI	GCATC	3 cut(s)	273, 284, 400
MalI	GATC	3 cut(s)	291, 318, 350
MboI	GATC	3 cut(s)	289, 316, 348
MboII	GAAGA	1 cut(s)	413
MflI	RGATCY	1 cut(s)	316
MluCI	AATT	3 cut(s)	166, 240, 363
MnlI	CCTC	1 cut(s)	319
MspA1I	CMGCKG	1 cut(s)	330
MspI	CCGG	1 cut(s)	52
MspR9I	CCNGG	2 cut(s)	261, 412
MvaI	CCWGG	2 cut(s)	261, 412
MwoI	GCNNNNNNNGC	1 cut(s)	463
NdeII	GATC	3 cut(s)	289, 316, 348
NlaIII	CATG	1 cut(s)	39
PfeI	GAWTC	2 cut(s)	305, 433
PkrI	GCNGC	4 cut(s)	175, 332, 456, 459
Psp6I	CCWGG	2 cut(s)	259, 410
PspGI	CCWGG	2 cut(s)	259, 410
PspPI	GGNCC	2 cut(s)	144, 257
PsuI	RGATCY	1 cut(s)	316
PvuII	CAGCTG	1 cut(s)	330
SatI	GCNGC	4 cut(s)	174, 331, 455, 458
Sau3AI	GATC	3 cut(s)	289, 316, 348
Sau96I	GGNCC	2 cut(s)	144, 257
ScrFI	CCNGG	2 cut(s)	261, 412
SetI	ASST	9 cut(s)	72, 175, 195, 232, 277, 282, 332, 374, 456
SfaNI	GCATC	3 cut(s)	273, 284, 400
SmlI	CTYRAG	2 cut(s)	270, 310
SmoI	CTYRAG	2 cut(s)	270, 310
Sse9I	AATT	3 cut(s)	166, 240, 363
StyD4I	CCNGG	2 cut(s)	259, 410
TaqI	TCGA	1 cut(s)	292
TasI	AATT	3 cut(s)	166, 240, 363
TfiI	GAWTC	2 cut(s)	305, 433
TseI	GCWGC	4 cut(s)	173, 330, 454, 457
TspDTI	ATGAA	2 cut(s)	7, 440
XapI	RAATTY	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.