Probable zinc-ribbon domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G05190 |
| fragaria_vesca | FvH4_7g26160 |
| malus_domestica | MD01G1169800.v1.1 MD01G1169900.v1.1 MD07G1235500.v1.1 |
| prunus_persica | Prupe.2G265800_v2.0.a1 Prupe.2G265800_v2.0.a1 Prupe.2G265800_v2.0.a1 Prupe.4G213000_v2.0.a1 Prupe.4G213000_v2.0.a1 Prupe.4G213000_v2.0.a1 Prupe.4G213000_v2.0.a1 Prupe.4G213000_v2.0.a1 |
| pyrus_communis | pycom01g18250 pycom01g18260 pycom07g21310 |
| rosa_chinensis | RchiOBHm_Chr1g0372591 RchiOBHm_Chr4g0399021 RchiOBHm_Chr5g0049731 RchiOBHm_Chr7g0243711 |
| rosa_laevigata | RLG00000001030 RLG00000008808 RLG00000010509 RLG00000026888 |
| rosa_multiflora | Rmu_ssc0000419.1_g000010 |
| rosa_roxburghii | Rroxscaffold_7G00208520 |
| rosa_rugosa | Rorug01G0066000 Rorug01G0373300 |
| rosa_samantha | Rh1AG381600 Rh1BG345000 Rh1CG358400 Rh1DG376200 Rh2BG091800 Rh3DG186100 Rh4DG129900 Rh5AG465400 Rh7AG476000 |
| rosa_wichuraiana | Rw0G018150 Rw1G033560 Rw2G022780 Rw7G041610 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 2151, 3030 |
| AarI | CACCTGC | 1 cut(s) | 2993 |
| Acc36I | ACCTGC | 2 cut(s) | 2993, 3064 |
| Acc65I | GGTACC | 1 cut(s) | 1889 |
| AccB1I | GGYRCC | 1 cut(s) | 1889 |
| AccBSI | CCGCTC | 1 cut(s) | 2693 |
| AccI | GTMKAC | 3 cut(s) | 87, 394, 1611 |
| AciI | CCGC | 7 cut(s) | 1928, 2207, 2557, 2693, 3044, 3102, 3200 |
| AclWI | GGATC | 6 cut(s) | 1239, 1346, 1359, 2319, 3197, 3210 |
| AcsI | RAATTY | 2 cut(s) | 623, 1491 |
| AcvI | CACGTG | 1 cut(s) | 1763 |
| AdeI | CACNNNGTG | 1 cut(s) | 3191 |
| AfaI | GTAC | 5 cut(s) | 1891, 1987, 2618, 2726, 2816 |
| AflII | CTTAAG | 2 cut(s) | 1288, 3122 |
| AflIII | ACRYGT | 1 cut(s) | 2499 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2982 |
| AhlI | ACTAGT | 1 cut(s) | 31 |
| AjnI | CCWGG | 4 cut(s) | 1825, 2258, 2341, 2875 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 182, 214 |
| Alw21I | GWGCWC | 2 cut(s) | 158, 3013 |
| Alw26I | GTCTC | 5 cut(s) | 1392, 1661, 2089, 3361, 3379 |
| AlwI | GGATC | 6 cut(s) | 1239, 1346, 1359, 2319, 3197, 3210 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 611, 797 |
| Ama87I | CYCGRG | 7 cut(s) | 262, 415, 802, 1009, 1213, 1711, 2924 |
| AoxI | GGCC | 5 cut(s) | 993, 1066, 1668, 2656, 3178 |
| ApoI | RAATTY | 2 cut(s) | 623, 1491 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 253, 1684 |
| Asp718I | GGTACC | 1 cut(s) | 1889 |
| AspA2I | CCTAGG | 3 cut(s) | 2393, 2422, 2669 |
| AspS9I | GGNCC | 3 cut(s) | 2516, 3179, 3588 |
| AsuHPI | GGTGA | 6 cut(s) | 1226, 1397, 1466, 1551, 2956, 3507 |
| AsuII | TTCGAA | 1 cut(s) | 1970 |
| AvaI | CYCGRG | 7 cut(s) | 262, 415, 802, 1009, 1213, 1711, 2924 |
| AvaII | GGWCC | 2 cut(s) | 2516, 3588 |
| AvrII | CCTAGG | 3 cut(s) | 2393, 2422, 2669 |
| AxyI | CCTNAGG | 1 cut(s) | 514 |
| BaeGI | GKGCMC | 1 cut(s) | 2931 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1447, 1480 |
| BamHI | GGATCC | 2 cut(s) | 1351, 3202 |
| BanI | GGYRCC | 1 cut(s) | 1889 |
| BanII | GRGCYC | 1 cut(s) | 3013 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 1882, 1914, 2689, 2721 |
| BauI | CACGAG | 1 cut(s) | 1642 |
| BbrPI | CACGTG | 1 cut(s) | 1763 |
| BbsI | GAAGAC | 9 cut(s) | 354, 555, 657, 741, 948, 1050, 1152, 1959, 2344 |
| Bbv12I | GWGCWC | 2 cut(s) | 158, 3013 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2573, 2607 |
| BciT130I | CCWGG | 4 cut(s) | 1827, 2260, 2343, 2877 |
| BclI | TGATCA | 3 cut(s) | 1438, 1954, 2107 |
| BcoDI | GTCTC | 5 cut(s) | 1392, 1661, 2089, 3361, 3379 |
| BcuI | ACTAGT | 1 cut(s) | 31 |
| BfmI | CTRYAG | 5 cut(s) | 395, 1368, 2022, 3047, 3057 |
| BfrI | CTTAAG | 2 cut(s) | 1288, 3122 |
| BfuAI | ACCTGC | 2 cut(s) | 2993, 3064 |
| BglII | AGATCT | 1 cut(s) | 2006 |
| BlnI | CCTAGG | 3 cut(s) | 2393, 2422, 2669 |
| BmcAI | AGTACT | 1 cut(s) | 2816 |
| Bme1390I | CCNGG | 4 cut(s) | 1827, 2260, 2343, 2877 |
| Bme18I | GGWCC | 2 cut(s) | 2516, 3588 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2982 |
| BmeT110I | CYCGRG | 7 cut(s) | 262, 415, 802, 1009, 1213, 1711, 2924 |
| BmgT120I | GGNCC | 3 cut(s) | 2516, 3179, 3588 |
| BmrFI | CCNGG | 4 cut(s) | 1827, 2260, 2343, 2877 |
| BmrI | ACTGGG | 1 cut(s) | 2608 |
| BmsI | GCATC | 4 cut(s) | 233, 2642, 2800, 3074 |
| BmuI | ACTGGG | 1 cut(s) | 2608 |
| BpiI | GAAGAC | 9 cut(s) | 354, 555, 657, 741, 948, 1050, 1152, 1959, 2344 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3376, 3408 |
| BpmI | CTGGAG | 2 cut(s) | 2728, 2787 |
| Bpu14I | TTCGAA | 1 cut(s) | 1970 |
| Bsa29I | ATCGAT | 1 cut(s) | 288 |
| BsaAI | YACGTR | 2 cut(s) | 1763, 2864 |
| BsaWI | WCCGGW | 3 cut(s) | 64, 2518, 2841 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 145, 175, 1798, 1828, 1888, 1918 |
| Bse118I | RCCGGY | 1 cut(s) | 51 |
| Bse1I | ACTGG | 7 cut(s) | 163, 1650, 2614, 2745, 2893, 3419, 3453 |
| Bse21I | CCTNAGG | 1 cut(s) | 514 |
| Bse3DI | GCAATG | 1 cut(s) | 1535 |
| BseBI | CCWGG | 4 cut(s) | 1827, 2260, 2343, 2877 |
| BseCI | ATCGAT | 1 cut(s) | 288 |
| BseMI | GCAATG | 1 cut(s) | 1535 |
| BseMII | CTCAG | 9 cut(s) | 134, 197, 528, 2001, 2011, 2528, 2628, 2832, 3495 |
| BseNI | ACTGG | 7 cut(s) | 163, 1650, 2614, 2745, 2893, 3419, 3453 |
| BseRI | GAGGAG | 4 cut(s) | 553, 2654, 2657, 3506 |
| BseSI | GKGCMC | 1 cut(s) | 2931 |
| BseYI | CCCAGC | 2 cut(s) | 2047, 2709 |
| BsgI | GTGCAG | 1 cut(s) | 2393 |
| BshFI | GGCC | 5 cut(s) | 995, 1068, 1670, 2658, 3180 |
| BshNI | GGYRCC | 1 cut(s) | 1889 |
| BshVI | ATCGAT | 1 cut(s) | 288 |
| BsiHKAI | GWGCWC | 2 cut(s) | 158, 3013 |
| BsiHKCI | CYCGRG | 7 cut(s) | 262, 415, 802, 1009, 1213, 1711, 2924 |
| BsiSI | CCGG | 6 cut(s) | 52, 65, 74, 1412, 2519, 2842 |
| BslFI | GGGAC | 4 cut(s) | 2029, 2912, 3140, 3601 |
| BsmAI | GTCTC | 5 cut(s) | 1392, 1661, 2089, 3361, 3379 |
| BsmBI | CGTCTC | 1 cut(s) | 3379 |
| BsmFI | GGGAC | 4 cut(s) | 2029, 2912, 3140, 3601 |
| BsmI | GAATGC | 7 cut(s) | 275, 326, 527, 815, 920, 1124, 3175 |
| BsnI | GGCC | 5 cut(s) | 995, 1068, 1670, 2658, 3180 |
| BsoBI | CYCGRG | 7 cut(s) | 262, 415, 802, 1009, 1213, 1711, 2924 |
| Bsp119I | TTCGAA | 1 cut(s) | 1970 |
| Bsp1286I | GDGCHC | 3 cut(s) | 158, 2931, 3013 |
| Bsp19I | CCATGG | 1 cut(s) | 2653 |
| BspACI | CCGC | 7 cut(s) | 1928, 2207, 2557, 2693, 3044, 3102, 3200 |
| BspANI | GGCC | 5 cut(s) | 995, 1068, 1670, 2658, 3180 |
| BspCNI | CTCAG | 9 cut(s) | 135, 196, 527, 2002, 2010, 2529, 2629, 2831, 3494 |
| BspDI | ATCGAT | 1 cut(s) | 288 |
| BspHI | TCATGA | 2 cut(s) | 2938, 3322 |
| BspMAI | CTGCAG | 3 cut(s) | 2026, 3051, 3061 |
| BspMI | ACCTGC | 2 cut(s) | 2993, 3064 |
| BspPI | GGATC | 6 cut(s) | 1239, 1346, 1359, 2319, 3197, 3210 |
| BspQI | GCTCTTC | 1 cut(s) | 280 |
| BspT104I | TTCGAA | 1 cut(s) | 1970 |
| BspT107I | GGYRCC | 1 cut(s) | 1889 |
| BspTI | CTTAAG | 2 cut(s) | 1288, 3122 |
| BsrBI | CCGCTC | 1 cut(s) | 2693 |
| BsrDI | GCAATG | 1 cut(s) | 1535 |
| BsrFI | RCCGGY | 1 cut(s) | 51 |
| BsrI | ACTGG | 7 cut(s) | 163, 1650, 2614, 2745, 2893, 3419, 3453 |
| BssAI | RCCGGY | 1 cut(s) | 51 |
| BssSI | CACGAG | 1 cut(s) | 1642 |
| BssT1I | CCWWGG | 5 cut(s) | 996, 2393, 2422, 2653, 2669 |
| Bst2BI | CACGAG | 1 cut(s) | 1642 |
| Bst2UI | CCWGG | 4 cut(s) | 1827, 2260, 2343, 2877 |
| Bst4CI | ACNGT | 7 cut(s) | 140, 175, 1369, 1460, 1758, 1855, 2903 |
| Bst6I | CTCTTC | 4 cut(s) | 280, 2092, 2412, 2538 |
| BstAFI | CTTAAG | 2 cut(s) | 1288, 3122 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3275 |
| BstBAI | YACGTR | 2 cut(s) | 1763, 2864 |
| BstBI | TTCGAA | 1 cut(s) | 1970 |
| BstC8I | GCNNGC | 4 cut(s) | 53, 1866, 2586, 3109 |
| BstDSI | CCRYGG | 2 cut(s) | 1459, 2653 |
| BstEII | GGTNACC | 1 cut(s) | 1454 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 513 |
| BstMAI | GTCTC | 5 cut(s) | 1392, 1661, 2089, 3361, 3379 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 2602, 3008, 3108, 3255, 3275 |
| BstNI | CCWGG | 4 cut(s) | 1827, 2260, 2343, 2877 |
| BstNSI | RCATGY | 3 cut(s) | 1864, 2503, 2588 |
| BstPI | GGTNACC | 1 cut(s) | 1454 |
| BstSCI | CCNGG | 4 cut(s) | 1825, 2258, 2341, 2875 |
| BstSFI | CTRYAG | 5 cut(s) | 395, 1368, 2022, 3047, 3057 |
| BstSLI | GKGCMC | 1 cut(s) | 2931 |
| BstSNI | TACGTA | 1 cut(s) | 2864 |
| BstV2I | GAAGAC | 9 cut(s) | 354, 555, 657, 741, 948, 1050, 1152, 1959, 2344 |
| BstX2I | RGATCY | 3 cut(s) | 1351, 2006, 3202 |
| BstYI | RGATCY | 3 cut(s) | 1351, 2006, 3202 |
| Bsu15I | ATCGAT | 1 cut(s) | 288 |
| Bsu36I | CCTNAGG | 1 cut(s) | 514 |
| BsuRI | GGCC | 5 cut(s) | 995, 1068, 1670, 2658, 3180 |
| BsuTUI | ATCGAT | 1 cut(s) | 288 |
| BtgI | CCRYGG | 2 cut(s) | 1459, 2653 |
| BtsI | GCAGTG | 1 cut(s) | 2019 |
| BveI | ACCTGC | 2 cut(s) | 2993, 3064 |
| Cac8I | GCNNGC | 4 cut(s) | 53, 1866, 2586, 3109 |
| CaiI | CAGNNNCTG | 2 cut(s) | 611, 797 |
| CciI | TCATGA | 2 cut(s) | 2938, 3322 |
| Cfr10I | RCCGGY | 1 cut(s) | 51 |
| Cfr13I | GGNCC | 3 cut(s) | 2516, 3179, 3588 |
| ClaI | ATCGAT | 1 cut(s) | 288 |
| CseI | GACGC | 2 cut(s) | 2972, 3396 |
| CsiI | ACCWGGT | 1 cut(s) | 2341 |
| Csp6I | GTAC | 5 cut(s) | 1890, 1986, 2617, 2725, 2815 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 79, 114 |
| CviQI | GTAC | 5 cut(s) | 1890, 1986, 2617, 2725, 2815 |
| DraI | TTTAAA | 3 cut(s) | 165, 990, 2577 |
| DraIII | CACNNNGTG | 1 cut(s) | 3191 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2982 |
| Eam1104I | CTCTTC | 4 cut(s) | 280, 2092, 2412, 2538 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2982 |
| EarI | CTCTTC | 4 cut(s) | 280, 2092, 2412, 2538 |
| EciI | GGCGGA | 1 cut(s) | 2222 |
| Ecl136II | GAGCTC | 1 cut(s) | 3011 |
| Eco105I | TACGTA | 1 cut(s) | 2864 |
| Eco130I | CCWWGG | 5 cut(s) | 996, 2393, 2422, 2653, 2669 |
| Eco147I | AGGCCT | 1 cut(s) | 1068 |
| Eco24I | GRGCYC | 1 cut(s) | 3013 |
| Eco32I | GATATC | 1 cut(s) | 1735 |
| Eco47I | GGWCC | 2 cut(s) | 2516, 3588 |
| Eco53kI | GAGCTC | 1 cut(s) | 3011 |
| Eco72I | CACGTG | 1 cut(s) | 1763 |
| Eco81I | CCTNAGG | 1 cut(s) | 514 |
| Eco88I | CYCGRG | 7 cut(s) | 262, 415, 802, 1009, 1213, 1711, 2924 |
| Eco91I | GGTNACC | 1 cut(s) | 1454 |
| EcoICRI | GAGCTC | 1 cut(s) | 3011 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 513 |
| EcoO109I | RGGNCCY | 1 cut(s) | 3179 |
| EcoO65I | GGTNACC | 1 cut(s) | 1454 |
| EcoRI | GAATTC | 1 cut(s) | 623 |
| EcoRII | CCWGG | 4 cut(s) | 1825, 2258, 2341, 2875 |
| EcoRV | GATATC | 1 cut(s) | 1735 |
| EcoT14I | CCWWGG | 5 cut(s) | 996, 2393, 2422, 2653, 2669 |
| EcoT22I | ATGCAT | 2 cut(s) | 2463, 2793 |
| EcoT38I | GRGCYC | 1 cut(s) | 3013 |
| ErhI | CCWWGG | 5 cut(s) | 996, 2393, 2422, 2653, 2669 |
| Esp3I | CGTCTC | 1 cut(s) | 3379 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2071, 2103 |
| FaqI | GGGAC | 4 cut(s) | 2029, 2912, 3140, 3601 |
| FauI | CCCGC | 1 cut(s) | 2686 |
| FauNDI | CATATG | 2 cut(s) | 1704, 3340 |
| FbaI | TGATCA | 3 cut(s) | 1438, 1954, 2107 |
| FblI | GTMKAC | 3 cut(s) | 87, 394, 1611 |
| FriOI | GRGCYC | 1 cut(s) | 3013 |
| GsaI | CCCAGC | 2 cut(s) | 2051, 2713 |
| GsuI | CTGGAG | 2 cut(s) | 2728, 2787 |
| HaeIII | GGCC | 5 cut(s) | 995, 1068, 1670, 2658, 3180 |
| HapII | CCGG | 6 cut(s) | 52, 65, 74, 1412, 2519, 2842 |
| HgaI | GACGC | 2 cut(s) | 2972, 3396 |
| HincII | GTYRAC | 3 cut(s) | 2529, 2569, 2776 |
| HindII | GTYRAC | 3 cut(s) | 2529, 2569, 2776 |
| HpaI | GTTAAC | 1 cut(s) | 2569 |
| HpaII | CCGG | 6 cut(s) | 52, 65, 74, 1412, 2519, 2842 |
| HphI | GGTGA | 6 cut(s) | 1226, 1397, 1466, 1551, 2956, 3507 |
| HpyCH4III | ACNGT | 7 cut(s) | 140, 175, 1369, 1460, 1758, 1855, 2903 |
| HpyCH4IV | ACGT | 5 cut(s) | 207, 1202, 1762, 1788, 2863 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 2602, 3008, 3108, 3255, 3275 |
| HpySE526I | ACGT | 5 cut(s) | 207, 1202, 1762, 1788, 2863 |
| KpnI | GGTACC | 1 cut(s) | 1893 |
| KroI | GCCGGC | 1 cut(s) | 51 |
| KroNI | GCCGGC | 1 cut(s) | 53 |
| Ksp22I | TGATCA | 3 cut(s) | 1438, 1954, 2107 |
| KspAI | GTTAAC | 1 cut(s) | 2569 |
| LguI | GCTCTTC | 1 cut(s) | 280 |
| LweI | GCATC | 4 cut(s) | 233, 2642, 2800, 3074 |
| MabI | ACCWGGT | 1 cut(s) | 2341 |
| MaeII | ACGT | 5 cut(s) | 207, 1202, 1762, 1788, 2863 |
| MaeIII | GTNAC | 8 cut(s) | 203, 1292, 1454, 1758, 1849, 2859, 3286, 3536 |
| MbiI | CCGCTC | 1 cut(s) | 2693 |
| MflI | RGATCY | 3 cut(s) | 1351, 2006, 3202 |
| MhlI | GDGCHC | 3 cut(s) | 158, 2931, 3013 |
| MlyI | GAGTC | 5 cut(s) | 254, 368, 1001, 1205, 2524 |
| MmeI | TCCRAC | 2 cut(s) | 2494, 3380 |
| Mph1103I | ATGCAT | 2 cut(s) | 2463, 2793 |
| MroNI | GCCGGC | 1 cut(s) | 51 |
| MroXI | GAANNNNTTC | 2 cut(s) | 253, 1684 |
| MseI | TTAA | 9 cut(s) | 164, 989, 1289, 1544, 2568, 2576, 3039, 3123, 3602 |
| MslI | CAYNNNNRTG | 7 cut(s) | 1239, 1619, 1781, 1935, 2070, 2504, 2625 |
| MspA1I | CMGCKG | 1 cut(s) | 3046 |
| MspCI | CTTAAG | 2 cut(s) | 1288, 3122 |
| MspI | CCGG | 6 cut(s) | 52, 65, 74, 1412, 2519, 2842 |
| MspR9I | CCNGG | 4 cut(s) | 1827, 2260, 2343, 2877 |
| Mva1269I | GAATGC | 7 cut(s) | 275, 326, 527, 815, 920, 1124, 3175 |
| MvaI | CCWGG | 4 cut(s) | 1827, 2260, 2343, 2877 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 2602, 3008, 3108, 3255, 3275 |
| NaeI | GCCGGC | 1 cut(s) | 53 |
| NcoI | CCATGG | 1 cut(s) | 2653 |
| NdeI | CATATG | 2 cut(s) | 1704, 3340 |
| NgoMIV | GCCGGC | 1 cut(s) | 51 |
| NmuCI | GTSAC | 4 cut(s) | 203, 1292, 1454, 1758 |
| NsiI | ATGCAT | 2 cut(s) | 2463, 2793 |
| NspI | RCATGY | 3 cut(s) | 1864, 2503, 2588 |
| NspV | TTCGAA | 1 cut(s) | 1970 |
| PaeI | GCATGC | 1 cut(s) | 2588 |
| PagI | TCATGA | 2 cut(s) | 2938, 3322 |
| PaqCI | CACCTGC | 1 cut(s) | 2993 |
| PceI | AGGCCT | 1 cut(s) | 1068 |
| PciI | ACATGT | 1 cut(s) | 2499 |
| PciSI | GCTCTTC | 1 cut(s) | 280 |
| PctI | GAATGC | 7 cut(s) | 275, 326, 527, 815, 920, 1124, 3175 |
| PdiI | GCCGGC | 1 cut(s) | 53 |
| PdmI | GAANNNNTTC | 2 cut(s) | 253, 1684 |
| PflFI | GACNNNGTC | 1 cut(s) | 2343 |
| PfoI | TCCNGGA | 1 cut(s) | 1825 |
| PleI | GAGTC | 5 cut(s) | 254, 367, 1001, 1205, 2524 |
| PmaCI | CACGTG | 1 cut(s) | 1763 |
| PmlI | CACGTG | 1 cut(s) | 1763 |
| PpsI | GAGTC | 5 cut(s) | 254, 367, 1001, 1205, 2524 |
| Ppu21I | YACGTR | 2 cut(s) | 1763, 2864 |
| PscI | ACATGT | 1 cut(s) | 2499 |
| PsiI | TTATAA | 2 cut(s) | 2151, 3030 |
| Psp124BI | GAGCTC | 1 cut(s) | 3013 |
| Psp6I | CCWGG | 4 cut(s) | 1825, 2258, 2341, 2875 |
| PspCI | CACGTG | 1 cut(s) | 1763 |
| PspEI | GGTNACC | 1 cut(s) | 1454 |
| PspFI | CCCAGC | 2 cut(s) | 2047, 2709 |
| PspGI | CCWGG | 4 cut(s) | 1825, 2258, 2341, 2875 |
| PspPI | GGNCC | 3 cut(s) | 2516, 3179, 3588 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3565, 3597 |
| PstI | CTGCAG | 3 cut(s) | 2026, 3051, 3061 |
| PstNI | CAGNNNCTG | 2 cut(s) | 611, 797 |
| PsuI | RGATCY | 3 cut(s) | 1351, 2006, 3202 |
| PsyI | GACNNNGTC | 1 cut(s) | 2343 |
| RsaI | GTAC | 5 cut(s) | 1891, 1987, 2618, 2726, 2816 |
| RsaNI | GTAC | 5 cut(s) | 1890, 1986, 2617, 2725, 2815 |
| RseI | CAYNNNNRTG | 7 cut(s) | 1239, 1619, 1781, 1935, 2070, 2504, 2625 |
| SacI | GAGCTC | 1 cut(s) | 3013 |
| SapI | GCTCTTC | 1 cut(s) | 280 |
| SaqAI | TTAA | 9 cut(s) | 164, 989, 1289, 1544, 2568, 2576, 3039, 3123, 3602 |
| Sau96I | GGNCC | 3 cut(s) | 2516, 3179, 3588 |
| ScaI | AGTACT | 1 cut(s) | 2816 |
| SchI | GAGTC | 5 cut(s) | 254, 368, 1001, 1205, 2524 |
| ScrFI | CCNGG | 4 cut(s) | 1827, 2260, 2343, 2877 |
| SduI | GDGCHC | 3 cut(s) | 158, 2931, 3013 |
| SexAI | ACCWGGT | 1 cut(s) | 2341 |
| SfaNI | GCATC | 4 cut(s) | 233, 2642, 2800, 3074 |
| SfcI | CTRYAG | 5 cut(s) | 395, 1368, 2022, 3047, 3057 |
| SfuI | TTCGAA | 1 cut(s) | 1970 |
| SinI | GGWCC | 2 cut(s) | 2516, 3588 |
| SmiI | ATTTAAAT | 1 cut(s) | 2577 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 1239, 1619, 1781, 1935, 2070, 2504, 2625 |
| SnaBI | TACGTA | 1 cut(s) | 2864 |
| SpeI | ACTAGT | 1 cut(s) | 31 |
| SphI | GCATGC | 1 cut(s) | 2588 |
| SseBI | AGGCCT | 1 cut(s) | 1068 |
| SsiI | CCGC | 7 cut(s) | 1928, 2207, 2557, 2693, 3044, 3102, 3200 |
| SspI | AATATT | 2 cut(s) | 869, 1019 |
| SstI | GAGCTC | 1 cut(s) | 3013 |
| StuI | AGGCCT | 1 cut(s) | 1068 |
| StyD4I | CCNGG | 4 cut(s) | 1825, 2258, 2341, 2875 |
| StyI | CCWWGG | 5 cut(s) | 996, 2393, 2422, 2653, 2669 |
| SwaI | ATTTAAAT | 1 cut(s) | 2577 |
| TaaI | ACNGT | 7 cut(s) | 140, 175, 1369, 1460, 1758, 1855, 2903 |
| TaiI | ACGT | 5 cut(s) | 210, 1205, 1765, 1791, 2866 |
| TaqI | TCGA | 7 cut(s) | 28, 288, 1467, 1970, 2039, 2170, 2356 |
| TatI | WGTACW | 3 cut(s) | 1985, 2724, 2814 |
| TauI | GCSGC | 1 cut(s) | 3046 |
| Tru1I | TTAA | 9 cut(s) | 164, 989, 1289, 1544, 2568, 2576, 3039, 3123, 3602 |
| Tru9I | TTAA | 9 cut(s) | 164, 989, 1289, 1544, 2568, 2576, 3039, 3123, 3602 |
| TseFI | GTSAC | 4 cut(s) | 203, 1292, 1454, 1758 |
| Tsp45I | GTSAC | 4 cut(s) | 203, 1292, 1454, 1758 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2343 |
| Vha464I | CTTAAG | 2 cut(s) | 1288, 3122 |
| VpaK11BI | GGWCC | 2 cut(s) | 2516, 3588 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 513 |
| XapI | RAATTY | 2 cut(s) | 623, 1491 |
| XceI | RCATGY | 3 cut(s) | 1864, 2503, 2588 |
| XmaJI | CCTAGG | 3 cut(s) | 2393, 2422, 2669 |
| XmiI | GTMKAC | 3 cut(s) | 87, 394, 1611 |
| XmnI | GAANNNNTTC | 2 cut(s) | 253, 1684 |
| ZrmI | AGTACT | 1 cut(s) | 2816 |
| Zsp2I | ATGCAT | 2 cut(s) | 2463, 2793 |