Rw1G033560

Probable zinc-ribbon domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0002425
Physical Location & Seq
Reverse (-)
61610184 .. 61613983
3800 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G033560.1

Sequence Viewer

Length: 3417 bp
ATGAATGATGGATTGGGTCACGTTTCTGAACATAGGGCATCCAGCAGCACAAGTTGTAATGGAACTCTTTCTGACTCGGGAGAATGCTCTTCAGACCAAATCGATGAGAAGAATCAAAGTAAGTTTTCCAGAGAATGCTCTTTGGAAAGAAAGAGTGAGAGGGATGAGAATGAGTCTTCAGAAGGCACTGAATCTAGCAGCTCAAGTCTACAGGGTAAGGCTCCTGCCTCGGGAGAATTATCTTTGGAAAGAAGGAATGAGAGGGATGGGAGCAATTCTTCAGGAAGCATTGAATCCAGCTCAAGTCTAAAGGCTTCGGCTCCTGCCTCAGGAGAATGCTCTTTGAAAAGGAGGAGTGAGAGGGATGGGAATAAGTCTTCAGAAGGCATTGAATCTAGCAGCTCAAGTCTAAAGGCTTGGGCTCCTGCCTCGGAAGAATTCTATTCGGAAAGAAGGAATGGGAGTAGGTCTTCAGAAAGCATTGAATCTAGCAGCTCAAGTAAGGCTACTGCCTCGGAAGAAATCTATTTGGTAAGAAGGAATGGGAGTAAGTCTTCAGAAGGCACTGAATCTAGCAGCTCTAGTCTAAAGGCTTCAGCTTCTGCCTCGGGAGAATGCTCTTTGGAAAGAAGGAATGAGAAGGATGGGAGTAATTCTTCAGAAGGCACTGAATATTCTAGCAGCTCAAGTCTAAAGGCTACAACTCCCGATTTGGGAGAATGCACTTTGGAACGAAATAATGAGAGGGATGAGAGTAAGTCTTCAGAAGGCATTGAATATGGCAGCTTGGGTTTAAAGGCCAAGGCTCCTGACTCGGGAGAATATTCTTTGGAACAAAACATTGAGAGGGTTGAGAGTAAGTCTTCAAAAGGCCTTGAATCCAGCAGCTCAAGTCCAAAGGCTACAACTCCTGACTTGGGAGAATGCTCCTTGGAACGAAACATTGAGAGGGTTGAGAATAAGTCTTCAGAAGGCATTGAATCCAGCAGCTCAAGTCCAAAGGCTACGTTTCCTGACTCGGGAGAACACTTTTCGGATCACCACAATGAGAAGAATCAGAATAAGTTTTCTGAAGATGAAGAATCTAGCAGCTTAAGTCACAAGGTCATTCTTCCAGAATCAGGAGAATACACTACAATTCAAAACAACGAGAGGGATCCTGATAATTCAACTGTAGAAAATTATGGTGGTGAGCAGCTTGGAGACTTGAACTTGCCGGATGAAAACCAAAACAACCAGAGTGATCAAAATGATTATGGTGACCGTGGTATCGAGCAACTTGGAGTTTCCAAAGAAATCTCTTCATCAATGGAGTTGGCAAGTAATGAAAGAAAGGAGCCATTGCCAGTAACAGCAGCCTGTTCACCAGCATTGAAAGATGATGGGAGTTTACCTTTAGCACCAAATGTAGAAGTAGACATTGAGGTGGAGATTGATTATGATTCCACGAGTTCCAGTAGTCTCAATGCAGAGGCCACAAAGGGAAGTAGTTCAATATATCCTGCTCATATGCTCCCGAGGGAGAGCATTTCATCAGATATCATTCTATCTCCTGATGAACAGTCACGTGCAAAAGCAGACATCAACATGGACGTTGATTCTGATTTCAGGAGAGCAAGTGTTGTCAATCCAGGAGCTACAAGGGAAAGTGATTTTACTGTTCACATGCCAGCAAAAGAGAGCAGTTCATCAGGTACCCTTACTTCTTCTCCAAATGAACAACTCAAGGAACCGCATAATAGTGTTCCAAAAAGTTTTGATCATTTCAAGTCTTCGAACACGTTTGAAAGTACAGATTTTCTCAGCCCCAGATCTGAGTTTAGCACTGCAGTTAGAGATAGATCGAAGTCCCCAGCAACTAGAAGCCATCATGCTTATGATGGAAGTGTCTCTTCTTGTGATGGTATAGATGATCAGTTCTACAACCATAATCTACATACATTTCAAGATTCTTATAAAGCTCTGAACTTGGCTCGATCTGAAGAAAGATACAGAAGGGATAAGTTTCTGGCGGAAAGCATGGGAAATAGAGTTTCTGAATTACCAAGTCAAGCTAGGAGTTCCTGGTCAAGTCTGTCCGATAAGAATGGTCATGCCATGAAATACAGAAATCGGGATCAAGATGAATTGCTGCCACCTAGAAGACCAGGTCATCCAAGTCGAGATCATGCAAGAGTGCAGAGGAATGAATATATGCCTAGGATGCCTTCTCTTCAAAGAGGTTCCCTAGGTGGATATGGAAATGGACATTTCACAAATCAAATGCATAATGAGTTCCAAAGCAATTCAGACTATCAATCTGACATGTCTGTGAGTGTTGGACCGGACAAGTTGACTCTTCTGAGAATGGTTTATGAACTGCGGAATCAAGTTAACCATTTAAATGTGCATGCAAGTCGGCAGGAAAAGCATATTCCCCAGTACCATAATTATGAGGCATCTGAGGAGGAGCTTTTCCATGGCCTAAATCAGCCTAGGGATTTCAGAAGAAGCAGAGCGGGAAGCCATTATACCCAGCAGCAAAGTCAGTACACACGAATACCTTTCTCCAGTGAGGCAACAACAAGCAGACACCAAGTTGATCCCTCCTATATGCATCACTATCCTCCAGCCATGCAGTACTCAGCACCAATGCCTCTACCTATCCGGTGCAATACTAATGGGTTACGTAGGGTTCATCCTGGTTATGCCTCAAGCCAGTGGGACAGTGAAACAATGTCTGATGATCTCGGGCACATCAGTCATGAGGTGAAGAAGTATTATGGAGAGAAACAACAGATGACTAAGCGTCATTTCCTGCCAATAGCAGGTGGAGCTCCTATCGTGATTTGTTATAACTGCTTTAAGCCGCTGCAGATACCTGCAGATTTTCTTCTTTTCAAAAGGAGATGCCATAGACTTCACTGCGGTGCTTGCTCAAAGGTGCTTAAGTTTTCACTCCATAAGAGAACTCACATTGTCCCTTATGAAGTGAATGCAATAGGCCCTCCACCAAGTGAGGTTGCGGATCCTGTGTCGTATTCTGATGATTATGGTTATGAACTCTCATACTGCAAAAGTGGCTCTACTGAAGCAGGATATGCTGTAAATGTAACACTCTCAAGCTCTCTCCAAAGTAATTCAGTTCATGAGAGAAATATGTCATATGGTTCAAACAATCCAACAAGAGGGAGACAGGGGATTGTTTTGAGACGCTCTCATTCTCAAAACAAAGACCAGAATCCAGTGGAAAGATTTATGTCAGCAAGACCATCATCCAGTATGTTGAAGTCAAAAAATCATTCCTCAGAAGTTGAGGAGCTGCCACCAAAGTCAAGCTCACCACTTCATCAACTCATGGGTTACAAATCGCCAAGTCAAGTGATTAGAGGGTCTGGTATATCTCGTTCAGGGACAAAAAGCTCATTAAGGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zinc_ribbon_12

Protein Analysis

1138

Amino Acids

125.61

Weight (kDa)

5.76

Isoelectric Point (pI)

76.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_12 PF11331 936 - 980 2.5e-18 EDR4 zinc-ribbon domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1956, 2835
AarI CACCTGC 1 cut(s) 2798
Acc36I ACCTGC 2 cut(s) 2798, 2869
Acc65I GGTACC 1 cut(s) 1694
AccB1I GGYRCC 1 cut(s) 1694
AccBSI CCGCTC 1 cut(s) 2498
AccI GTMKAC 2 cut(s) 208, 1416
AciI CCGC 7 cut(s) 1733, 2012, 2362, 2498, 2849, 2907, 3005
AclWI GGATC 7 cut(s) 1044, 1151, 1164, 2124, 2576, 3002, 3015
AcsI RAATTY 1 cut(s) 437
AcvI CACGTG 1 cut(s) 1568
AdeI CACNNNGTG 1 cut(s) 2996
AfaI GTAC 5 cut(s) 1696, 1792, 2423, 2531, 2621
AfiI CCNNNNNNNGG 9 cut(s) 230, 329, 713, 815, 917, 1019, 1121, 2807, 3167
AflII CTTAAG 2 cut(s) 1093, 2927
AflIII ACRYGT 2 cut(s) 1779, 2304
AhdI GACNNNNNGTC 1 cut(s) 2787
AjnI CCWGG 4 cut(s) 1630, 2063, 2146, 2680
AjuI GAANNNNNNNTTGG 1 cut(s) 28
AleI CACNNNNGTG 1 cut(s) 2907
Alw21I GWGCWC 1 cut(s) 2818
Alw26I GTCTC 5 cut(s) 1197, 1466, 1894, 3166, 3184
AlwI GGATC 7 cut(s) 1044, 1151, 1164, 2124, 2576, 3002, 3015
AlwNI CAGNNNCTG 1 cut(s) 602
Ama87I CYCGRG 7 cut(s) 76, 229, 607, 814, 1018, 1516, 2729
AoxI GGCC 5 cut(s) 798, 871, 1473, 2461, 2983
ApoI RAATTY 1 cut(s) 437
Asp700I GAANNNNTTC 2 cut(s) 67, 1489
Asp718I GGTACC 1 cut(s) 1694
AspA2I CCTAGG 3 cut(s) 2198, 2227, 2474
AspS9I GGNCC 2 cut(s) 2321, 2984
AsuHPI GGTGA 6 cut(s) 1031, 1202, 1271, 1356, 2761, 3312
AsuII TTCGAA 1 cut(s) 1775
AvaI CYCGRG 7 cut(s) 76, 229, 607, 814, 1018, 1516, 2729
AvaII GGWCC 1 cut(s) 2321
AvrII CCTAGG 3 cut(s) 2198, 2227, 2474
AxyI CCTNAGG 1 cut(s) 328
BaeGI GKGCMC 1 cut(s) 2736
BaeI ACNNNNGTAYC 2 cut(s) 1252, 1285
BamHI GGATCC 2 cut(s) 1156, 3007
BanI GGYRCC 1 cut(s) 1694
BanII GRGCYC 2 cut(s) 424, 2818
BarI GAAGNNNNNNTAC 4 cut(s) 1687, 1719, 2494, 2526
BauI CACGAG 1 cut(s) 1447
BbrPI CACGTG 1 cut(s) 1568
BbsI GAAGAC 9 cut(s) 168, 369, 462, 546, 753, 855, 957, 1764, 2149
Bbv12I GWGCWC 1 cut(s) 2818
BccI CCATC 9 cut(s) 2, 260, 359, 638, 1376, 1874, 1875, 1895, 3259
BcgI CGANNNNNNTGC 2 cut(s) 2378, 2412
BciT130I CCWGG 4 cut(s) 1632, 2065, 2148, 2682
BclI TGATCA 3 cut(s) 1243, 1759, 1912
BcoDI GTCTC 5 cut(s) 1197, 1466, 1894, 3166, 3184
BfmI CTRYAG 5 cut(s) 209, 1173, 1827, 2852, 2862
BfrI CTTAAG 2 cut(s) 1093, 2927
BfuAI ACCTGC 2 cut(s) 2798, 2869
BglII AGATCT 1 cut(s) 1811
BlnI CCTAGG 3 cut(s) 2198, 2227, 2474
BmcAI AGTACT 1 cut(s) 2621
Bme1390I CCNGG 4 cut(s) 1632, 2065, 2148, 2682
Bme18I GGWCC 1 cut(s) 2321
BmeRI GACNNNNNGTC 1 cut(s) 2787
BmeT110I CYCGRG 7 cut(s) 76, 229, 607, 814, 1018, 1516, 2729
BmgT120I GGNCC 2 cut(s) 2321, 2984
BmrFI CCNGG 4 cut(s) 1632, 2065, 2148, 2682
BmrI ACTGGG 1 cut(s) 2413
BmsI GCATC 5 cut(s) 47, 2193, 2447, 2605, 2879
BmuI ACTGGG 1 cut(s) 2413
BpiI GAAGAC 9 cut(s) 168, 369, 462, 546, 753, 855, 957, 1764, 2149
BplI GAGNNNNNCTC 2 cut(s) 3181, 3213
BpmI CTGGAG 2 cut(s) 2533, 2592
Bpu14I TTCGAA 1 cut(s) 1775
Bsa29I ATCGAT 1 cut(s) 102
BsaAI YACGTR 2 cut(s) 1568, 2669
BsaWI WCCGGW 2 cut(s) 2323, 2646
BsaXI ACNNNNNCTCC 4 cut(s) 1603, 1633, 1693, 1723
Bsc4I CCNNNNNNNGG 9 cut(s) 230, 329, 713, 815, 917, 1019, 1121, 2807, 3167
Bse1I ACTGG 7 cut(s) 1346, 1455, 2419, 2550, 2698, 3224, 3258
Bse21I CCTNAGG 1 cut(s) 328
Bse3DI GCAATG 1 cut(s) 1340
BseBI CCWGG 4 cut(s) 1632, 2065, 2148, 2682
BseCI ATCGAT 1 cut(s) 102
BseLI CCNNNNNNNGG 9 cut(s) 230, 329, 713, 815, 917, 1019, 1121, 2807, 3167
BseMI GCAATG 1 cut(s) 1340
BseMII CTCAG 7 cut(s) 342, 1806, 1816, 2333, 2433, 2637, 3300
BseNI ACTGG 7 cut(s) 1346, 1455, 2419, 2550, 2698, 3224, 3258
BseRI GAGGAG 4 cut(s) 367, 2459, 2462, 3311
BseSI GKGCMC 1 cut(s) 2736
BseYI CCCAGC 2 cut(s) 1852, 2514
BsgI GTGCAG 1 cut(s) 2198
BshFI GGCC 5 cut(s) 800, 873, 1475, 2463, 2985
BshNI GGYRCC 1 cut(s) 1694
BshVI ATCGAT 1 cut(s) 102
BsiHKAI GWGCWC 1 cut(s) 2818
BsiHKCI CYCGRG 7 cut(s) 76, 229, 607, 814, 1018, 1516, 2729
BsiSI CCGG 3 cut(s) 1217, 2324, 2647
BslFI GGGAC 4 cut(s) 1834, 2717, 2945, 3406
BslI CCNNNNNNNGG 9 cut(s) 230, 329, 713, 815, 917, 1019, 1121, 2807, 3167
BsmAI GTCTC 5 cut(s) 1197, 1466, 1894, 3166, 3184
BsmBI CGTCTC 1 cut(s) 3184
BsmFI GGGAC 4 cut(s) 1834, 2717, 2945, 3406
BsmI GAATGC 7 cut(s) 89, 140, 341, 620, 725, 929, 2980
BsnI GGCC 5 cut(s) 800, 873, 1475, 2463, 2985
BsoBI CYCGRG 7 cut(s) 76, 229, 607, 814, 1018, 1516, 2729
Bsp119I TTCGAA 1 cut(s) 1775
Bsp1286I GDGCHC 3 cut(s) 424, 2736, 2818
Bsp19I CCATGG 1 cut(s) 2458
BspACI CCGC 7 cut(s) 1733, 2012, 2362, 2498, 2849, 2907, 3005
BspANI GGCC 5 cut(s) 800, 873, 1475, 2463, 2985
BspCNI CTCAG 7 cut(s) 341, 1807, 1815, 2334, 2434, 2636, 3299
BspDI ATCGAT 1 cut(s) 102
BspHI TCATGA 2 cut(s) 2743, 3127
BspMAI CTGCAG 3 cut(s) 1831, 2856, 2866
BspMI ACCTGC 2 cut(s) 2798, 2869
BspPI GGATC 7 cut(s) 1044, 1151, 1164, 2124, 2576, 3002, 3015
BspQI GCTCTTC 1 cut(s) 94
BspT104I TTCGAA 1 cut(s) 1775
BspT107I GGYRCC 1 cut(s) 1694
BspTI CTTAAG 2 cut(s) 1093, 2927
BsrBI CCGCTC 1 cut(s) 2498
BsrDI GCAATG 1 cut(s) 1340
BsrI ACTGG 7 cut(s) 1346, 1455, 2419, 2550, 2698, 3224, 3258
BssSI CACGAG 1 cut(s) 1447
BssT1I CCWWGG 6 cut(s) 801, 930, 2198, 2227, 2458, 2474
Bst2BI CACGAG 1 cut(s) 1447
Bst2UI CCWGG 4 cut(s) 1632, 2065, 2148, 2682
Bst4CI ACNGT 5 cut(s) 1174, 1265, 1563, 1660, 2708
Bst6I CTCTTC 5 cut(s) 94, 1306, 1897, 2217, 2343
BstAFI CTTAAG 2 cut(s) 1093, 2927
BstAPI GCANNNNNTGC 1 cut(s) 3080
BstBAI YACGTR 2 cut(s) 1568, 2669
BstBI TTCGAA 1 cut(s) 1775
BstC8I GCNNGC 3 cut(s) 1671, 2391, 2914
BstDEI CTNAG 8 cut(s) 328, 1802, 1815, 2342, 2442, 2623, 2784, 3286
BstDSI CCRYGG 2 cut(s) 1264, 2458
BstEII GGTNACC 1 cut(s) 1259
BstENI CCTNNNNNAGG 1 cut(s) 327
BstMAI GTCTC 5 cut(s) 1197, 1466, 1894, 3166, 3184
BstMWI GCNNNNNNNGC 6 cut(s) 2203, 2407, 2813, 2913, 3060, 3080
BstNI CCWGG 4 cut(s) 1632, 2065, 2148, 2682
BstNSI RCATGY 3 cut(s) 1669, 2308, 2393
BstPI GGTNACC 1 cut(s) 1259
BstSCI CCNGG 4 cut(s) 1630, 2063, 2146, 2680
BstSFI CTRYAG 5 cut(s) 209, 1173, 1827, 2852, 2862
BstSLI GKGCMC 1 cut(s) 2736
BstSNI TACGTA 1 cut(s) 2669
BstV2I GAAGAC 9 cut(s) 168, 369, 462, 546, 753, 855, 957, 1764, 2149
BstX2I RGATCY 3 cut(s) 1156, 1811, 3007
BstYI RGATCY 3 cut(s) 1156, 1811, 3007
Bsu15I ATCGAT 1 cut(s) 102
Bsu36I CCTNAGG 1 cut(s) 328
BsuRI GGCC 5 cut(s) 800, 873, 1475, 2463, 2985
BsuTUI ATCGAT 1 cut(s) 102
BtgI CCRYGG 2 cut(s) 1264, 2458
BtsI GCAGTG 2 cut(s) 1824, 2902
BtsIMutI CAGTG 9 cut(s) 186, 564, 666, 1824, 2557, 2705, 2713, 2902, 3231
BveI ACCTGC 2 cut(s) 2798, 2869
Cac8I GCNNGC 3 cut(s) 1671, 2391, 2914
CaiI CAGNNNCTG 1 cut(s) 602
CciI TCATGA 2 cut(s) 2743, 3127
Cfr13I GGNCC 2 cut(s) 2321, 2984
ClaI ATCGAT 1 cut(s) 102
CseI GACGC 2 cut(s) 2777, 3201
CsiI ACCWGGT 1 cut(s) 2146
Csp6I GTAC 5 cut(s) 1695, 1791, 2422, 2530, 2620
CviQI GTAC 5 cut(s) 1695, 1791, 2422, 2530, 2620
DdeI CTNAG 8 cut(s) 328, 1802, 1815, 2342, 2442, 2623, 2784, 3286
DraI TTTAAA 2 cut(s) 795, 2382
DraIII CACNNNGTG 1 cut(s) 2996
DriI GACNNNNNGTC 1 cut(s) 2787
Eam1104I CTCTTC 5 cut(s) 94, 1306, 1897, 2217, 2343
Eam1105I GACNNNNNGTC 1 cut(s) 2787
EarI CTCTTC 5 cut(s) 94, 1306, 1897, 2217, 2343
EciI GGCGGA 1 cut(s) 2027
Ecl136II GAGCTC 1 cut(s) 2816
Eco105I TACGTA 1 cut(s) 2669
Eco130I CCWWGG 6 cut(s) 801, 930, 2198, 2227, 2458, 2474
Eco147I AGGCCT 1 cut(s) 873
Eco24I GRGCYC 2 cut(s) 424, 2818
Eco32I GATATC 1 cut(s) 1540
Eco47I GGWCC 1 cut(s) 2321
Eco53kI GAGCTC 1 cut(s) 2816
Eco72I CACGTG 1 cut(s) 1568
Eco81I CCTNAGG 1 cut(s) 328
Eco88I CYCGRG 7 cut(s) 76, 229, 607, 814, 1018, 1516, 2729
Eco91I GGTNACC 1 cut(s) 1259
EcoICRI GAGCTC 1 cut(s) 2816
EcoNI CCTNNNNNAGG 1 cut(s) 327
EcoO109I RGGNCCY 1 cut(s) 2984
EcoO65I GGTNACC 1 cut(s) 1259
EcoRI GAATTC 1 cut(s) 437
EcoRII CCWGG 4 cut(s) 1630, 2063, 2146, 2680
EcoRV GATATC 1 cut(s) 1540
EcoT14I CCWWGG 6 cut(s) 801, 930, 2198, 2227, 2458, 2474
EcoT22I ATGCAT 2 cut(s) 2268, 2598
EcoT38I GRGCYC 2 cut(s) 424, 2818
ErhI CCWWGG 6 cut(s) 801, 930, 2198, 2227, 2458, 2474
Esp3I CGTCTC 1 cut(s) 3184
FalI AAGNNNNNCTT 2 cut(s) 1876, 1908
FaqI GGGAC 4 cut(s) 1834, 2717, 2945, 3406
FauI CCCGC 1 cut(s) 2491
FauNDI CATATG 2 cut(s) 1509, 3145
FbaI TGATCA 3 cut(s) 1243, 1759, 1912
FblI GTMKAC 2 cut(s) 208, 1416
FriOI GRGCYC 2 cut(s) 424, 2818
GsaI CCCAGC 2 cut(s) 1856, 2518
GsuI CTGGAG 2 cut(s) 2533, 2592
HaeIII GGCC 5 cut(s) 800, 873, 1475, 2463, 2985
HapII CCGG 3 cut(s) 1217, 2324, 2647
HgaI GACGC 2 cut(s) 2777, 3201
HincII GTYRAC 2 cut(s) 2334, 2374
HindII GTYRAC 2 cut(s) 2334, 2374
HpaI GTTAAC 1 cut(s) 2374
HpaII CCGG 3 cut(s) 1217, 2324, 2647
HphI GGTGA 6 cut(s) 1031, 1202, 1271, 1356, 2761, 3312
Hpy166II GTNNAC 8 cut(s) 209, 1364, 1391, 1417, 1663, 2334, 2374, 2532
Hpy8I GTNNAC 8 cut(s) 209, 1364, 1391, 1417, 1663, 2334, 2374, 2532
HpyCH4III ACNGT 5 cut(s) 1174, 1265, 1563, 1660, 2708
HpyCH4IV ACGT 6 cut(s) 21, 1007, 1567, 1593, 1781, 2668
HpyF10VI GCNNNNNNNGC 6 cut(s) 2203, 2407, 2813, 2913, 3060, 3080
HpyF3I CTNAG 8 cut(s) 328, 1802, 1815, 2342, 2442, 2623, 2784, 3286
HpySE526I ACGT 6 cut(s) 21, 1007, 1567, 1593, 1781, 2668
KpnI GGTACC 1 cut(s) 1698
Ksp22I TGATCA 3 cut(s) 1243, 1759, 1912
KspAI GTTAAC 1 cut(s) 2374
LguI GCTCTTC 1 cut(s) 94
LweI GCATC 5 cut(s) 47, 2193, 2447, 2605, 2879
MabI ACCWGGT 1 cut(s) 2146
MaeII ACGT 6 cut(s) 21, 1007, 1567, 1593, 1781, 2668
MaeIII GTNAC 8 cut(s) 17, 1097, 1259, 1348, 1563, 2664, 3091, 3341
MbiI CCGCTC 1 cut(s) 2498
MflI RGATCY 3 cut(s) 1156, 1811, 3007
MhlI GDGCHC 3 cut(s) 424, 2736, 2818
MlyI GAGTC 5 cut(s) 68, 182, 806, 1010, 2329
MmeI TCCRAC 2 cut(s) 2299, 3185
Mph1103I ATGCAT 2 cut(s) 2268, 2598
MroXI GAANNNNTTC 2 cut(s) 67, 1489
MseI TTAA 7 cut(s) 794, 1094, 2373, 2381, 2844, 2928, 3407
MslI CAYNNNNRTG 9 cut(s) 1044, 1424, 1586, 1740, 1875, 2309, 2382, 2430, 2907
MspA1I CMGCKG 1 cut(s) 2851
MspCI CTTAAG 2 cut(s) 1093, 2927
MspI CCGG 3 cut(s) 1217, 2324, 2647
MspR9I CCNGG 4 cut(s) 1632, 2065, 2148, 2682
Mva1269I GAATGC 7 cut(s) 89, 140, 341, 620, 725, 929, 2980
MvaI CCWGG 4 cut(s) 1632, 2065, 2148, 2682
MwoI GCNNNNNNNGC 6 cut(s) 2203, 2407, 2813, 2913, 3060, 3080
NcoI CCATGG 1 cut(s) 2458
NdeI CATATG 2 cut(s) 1509, 3145
NmuCI GTSAC 4 cut(s) 17, 1097, 1259, 1563
NsiI ATGCAT 2 cut(s) 2268, 2598
NspI RCATGY 3 cut(s) 1669, 2308, 2393
NspV TTCGAA 1 cut(s) 1775
OliI CACNNNNGTG 1 cut(s) 2907
PaeI GCATGC 1 cut(s) 2393
PagI TCATGA 2 cut(s) 2743, 3127
PaqCI CACCTGC 1 cut(s) 2798
PceI AGGCCT 1 cut(s) 873
PciI ACATGT 1 cut(s) 2304
PciSI GCTCTTC 1 cut(s) 94
PctI GAATGC 7 cut(s) 89, 140, 341, 620, 725, 929, 2980
PdmI GAANNNNTTC 2 cut(s) 67, 1489
PflFI GACNNNGTC 1 cut(s) 2148
PfoI TCCNGGA 1 cut(s) 1630
PleI GAGTC 5 cut(s) 68, 181, 806, 1010, 2329
PmaCI CACGTG 1 cut(s) 1568
PmlI CACGTG 1 cut(s) 1568
PpsI GAGTC 5 cut(s) 68, 181, 806, 1010, 2329
Ppu21I YACGTR 2 cut(s) 1568, 2669
PscI ACATGT 1 cut(s) 2304
PsiI TTATAA 2 cut(s) 1956, 2835
Psp124BI GAGCTC 1 cut(s) 2818
Psp6I CCWGG 4 cut(s) 1630, 2063, 2146, 2680
PspCI CACGTG 1 cut(s) 1568
PspEI GGTNACC 1 cut(s) 1259
PspFI CCCAGC 2 cut(s) 1852, 2514
PspGI CCWGG 4 cut(s) 1630, 2063, 2146, 2680
PspPI GGNCC 2 cut(s) 2321, 2984
PsrI GAACNNNNNNTAC 2 cut(s) 3370, 3402
PstI CTGCAG 3 cut(s) 1831, 2856, 2866
PstNI CAGNNNCTG 1 cut(s) 602
PsuI RGATCY 3 cut(s) 1156, 1811, 3007
PsyI GACNNNGTC 1 cut(s) 2148
RsaI GTAC 5 cut(s) 1696, 1792, 2423, 2531, 2621
RsaNI GTAC 5 cut(s) 1695, 1791, 2422, 2530, 2620
RseI CAYNNNNRTG 9 cut(s) 1044, 1424, 1586, 1740, 1875, 2309, 2382, 2430, 2907
SacI GAGCTC 1 cut(s) 2818
SapI GCTCTTC 1 cut(s) 94
SaqAI TTAA 7 cut(s) 794, 1094, 2373, 2381, 2844, 2928, 3407
Sau96I GGNCC 2 cut(s) 2321, 2984
ScaI AGTACT 1 cut(s) 2621
SchI GAGTC 5 cut(s) 68, 182, 806, 1010, 2329
ScrFI CCNGG 4 cut(s) 1632, 2065, 2148, 2682
SduI GDGCHC 3 cut(s) 424, 2736, 2818
SexAI ACCWGGT 1 cut(s) 2146
SfaNI GCATC 5 cut(s) 47, 2193, 2447, 2605, 2879
SfcI CTRYAG 5 cut(s) 209, 1173, 1827, 2852, 2862
SfuI TTCGAA 1 cut(s) 1775
SinI GGWCC 1 cut(s) 2321
SmiI ATTTAAAT 1 cut(s) 2382
SmiMI CAYNNNNRTG 9 cut(s) 1044, 1424, 1586, 1740, 1875, 2309, 2382, 2430, 2907
SnaBI TACGTA 1 cut(s) 2669
SphI GCATGC 1 cut(s) 2393
SseBI AGGCCT 1 cut(s) 873
SsiI CCGC 7 cut(s) 1733, 2012, 2362, 2498, 2849, 2907, 3005
SspI AATATT 2 cut(s) 674, 824
SstI GAGCTC 1 cut(s) 2818
StuI AGGCCT 1 cut(s) 873
StyD4I CCNGG 4 cut(s) 1630, 2063, 2146, 2680
StyI CCWWGG 6 cut(s) 801, 930, 2198, 2227, 2458, 2474
SwaI ATTTAAAT 1 cut(s) 2382
TaaI ACNGT 5 cut(s) 1174, 1265, 1563, 1660, 2708
TaiI ACGT 6 cut(s) 24, 1010, 1570, 1596, 1784, 2671
TaqI TCGA 6 cut(s) 102, 1272, 1775, 1844, 1975, 2161
TatI WGTACW 3 cut(s) 1790, 2529, 2619
TauI GCSGC 1 cut(s) 2851
Tru1I TTAA 7 cut(s) 794, 1094, 2373, 2381, 2844, 2928, 3407
Tru9I TTAA 7 cut(s) 794, 1094, 2373, 2381, 2844, 2928, 3407
TscAI CASTG 9 cut(s) 193, 571, 673, 1831, 2557, 2705, 2713, 2909, 3231
TseFI GTSAC 4 cut(s) 17, 1097, 1259, 1563
Tsp45I GTSAC 4 cut(s) 17, 1097, 1259, 1563
TspRI CASTG 9 cut(s) 193, 571, 673, 1831, 2557, 2705, 2713, 2909, 3231
Tth111I GACNNNGTC 1 cut(s) 2148
Vha464I CTTAAG 2 cut(s) 1093, 2927
VpaK11BI GGWCC 1 cut(s) 2321
XagI CCTNNNNNAGG 1 cut(s) 327
XapI RAATTY 1 cut(s) 437
XceI RCATGY 3 cut(s) 1669, 2308, 2393
XmaJI CCTAGG 3 cut(s) 2198, 2227, 2474
XmiI GTMKAC 2 cut(s) 208, 1416
XmnI GAANNNNTTC 2 cut(s) 67, 1489
ZrmI AGTACT 1 cut(s) 2621
Zsp2I ATGCAT 2 cut(s) 2268, 2598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.