Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002703

Physical Location & Seq

Genomic Coordinates Reverse (-)

13551832 .. 13553764

Gene Structure 1933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G155200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGTGTGCTTCATCAACTCAAGGCACCCTTACCCTGGTGGTACCAAAGGGCAAAAGATTCTTGTTAAATGCTGTGGCGTTTGAAGGGCCTTGCAGGGCTGGTAAAGTAAATTTTCAGATACAAGGGAGTATTGTTGCACCGAATAACATTGGTGCGTGGACAAACAAGGAGATGTGGATTCATTTTTCGGATGTACAAGGTCTAACGGTCAATGGAGGAGGTCGAATTGACGGAAACGGCGCCGTTTGGTGGAAAGCTTGCGGTAGCAAGGGCTGTCAAAGACCAACTGCTCTCCATTTCAACAAATGTCATGGCTTCCAATTGAGTCGTCTGGCAATTTTTAATAGCCCTAAAAATCATATAAGCATTTGTAGCTGCAATGGCCCCCGAGTTTATGGTCTCTTAATTTGGGCTCCTAAAGACAGTCCAAACACAGATGGAATTGATATTTCCCGATCAACCCGAGTCACCATTCAATCTTCTCATATAGCAACTGGTGATGATTGTATTGCCATCAATAGCGGTTCATCTTATATCAAGATTAGGGATATTAGATGCGGACCAGGCCATGGTATTAGTATTGGAAGTCTAGGTGAACATGGAGAATACAGTCAAGTGGAAGAGGTGCAAGTGAGCAATTGCAGCTTCAAGGGGACAACAAATGGAGTGAGAATCAAGACATGGGAAGGCGGATCGGGATATGCTAGGAAGATCACTTTCGAGGGGATCACATTTGAAGACACCAAAAATCCTATCATAATAGACCAGCACTATTTCGATAAACGACCTACTTCAGCAATGGACATAAGCAAGTCGGTACAAGTTAGCGACGTGACATACCGAAACATAAAAGGAACTTGCACTGATGAGAAAGCCATAACTTTGGCCTGCGCAGGGGGCGGATGCACAAACATTGTGATGAACAACGTGAGCATAAAATCGGATCTTCCAAACAAGAGGTCTTATGCTTACTGCGACAATGCCCATGGCACCTCTTCCTTCTCTTTGCCTTCTGTCCCATGCCTTTCGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

345

Amino Acids

37.06

Weight (kDa)

8.85

Isoelectric Point (pI)

33.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17200
fragaria_vesca	FvH4_1g02040 FvH4_7g04480
malus_domestica	MD11G1182600.v1.1
prunus_persica	Prupe.6G155200_v2.0.a1 Prupe.7G040000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0329731 RchiOBHm_Chr1g0329741
rosa_laevigata	RLG00000007091 RLG00000029867 RLG00000029868 RLG00000030024
rosa_multiflora	Rmu_sc0004219.1_g000003 Rmu_sc0017438.1_g000003 Rmu_sc0018130.1_g000001 Rmu_sc0033936.1_g000002 Rmu_sc0033936.1_g000003
rosa_roxburghii	Rroxscaffold_2G00148230 Rroxscaffold_4G00320740 Rroxscaffold_4G00320750 Rroxscaffold_5G00370820
rosa_rugosa	Rorug01G0082300 Rorug01G0082400.1 Rorug01G0082500 Rorug04G0233600
rosa_samantha	Rh1AG100800 Rh1AG101000 Rh1AG101100 Rh1BG079900 Rh1BG080100 Rh1CG096200 Rh1CG096300 Rh1DG103900 Rh4AG289500 Rh4BG295500 Rh4CG311000 Rh4DG292400
rosa_wichuraiana	Rw1G007960 Rw1G007970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	892
Acc65I	GGTACC	1 cut(s)	40
AccB1I	GGYRCC	4 cut(s)	23, 40, 239, 989
AccB7I	CCANNNNNTGG	1 cut(s)	569
AciI	CCGC	5 cut(s)	261, 522, 558, 690, 900
AclWI	GGATC	3 cut(s)	700, 734, 951
AcsI	RAATTY	1 cut(s)	109
AcuI	CTGAAG	1 cut(s)	777
AcyI	GRCGYC	1 cut(s)	240
AfaI	GTAC	3 cut(s)	42, 195, 819
AfiI	CCNNNNNNNGG	4 cut(s)	34, 249, 569, 894
AgsI	TTSAA	5 cut(s)	83, 301, 476, 649, 737
AjiI	CACGTC	1 cut(s)	832
AjnI	CCWGG	2 cut(s)	33, 562
AluBI	AGCT	3 cut(s)	257, 375, 645
AluI	AGCT	3 cut(s)	257, 375, 645
Alw26I	GTCTC	1 cut(s)	404
AlwI	GGATC	3 cut(s)	700, 734, 951
Ama87I	CYCGRG	2 cut(s)	387, 462
AoxI	GGCC	4 cut(s)	86, 382, 565, 885
ApeKI	GCWGC	2 cut(s)	375, 642
ApoI	RAATTY	1 cut(s)	109
ArsI	GACNNNNNNTTYG	2 cut(s)	944, 976
Asp718I	GGTACC	1 cut(s)	40
AspLEI	GCGC	2 cut(s)	242, 893
AspS9I	GGNCC	3 cut(s)	86, 383, 560
AsuHPI	GGTGA	3 cut(s)	460, 509, 605
AvaI	CYCGRG	2 cut(s)	387, 462
AvaII	GGWCC	1 cut(s)	560
BanI	GGYRCC	4 cut(s)	23, 40, 239, 989
BanII	GRGCYC	1 cut(s)	415
BbsI	GAAGAC	1 cut(s)	744
BbvI	GCAGC	2 cut(s)	362, 654
BccI	CCATC	2 cut(s)	431, 521
BceAI	ACGGC	2 cut(s)	227, 253
BciT130I	CCWGG	2 cut(s)	35, 564
BcoDI	GTCTC	1 cut(s)	404
BfaI	CTAG	2 cut(s)	590, 705
BfoI	RGCGCY	1 cut(s)	243
BisI	GCNGC	2 cut(s)	376, 643
BlsI	GCNGC	2 cut(s)	377, 644
Bme1390I	CCNGG	2 cut(s)	35, 564
Bme18I	GGWCC	1 cut(s)	560
BmeT110I	CYCGRG	2 cut(s)	387, 462
BmgBI	CACGTC	1 cut(s)	832
BmgT120I	GGNCC	3 cut(s)	86, 383, 560
BmiI	GGNNCC	6 cut(s)	25, 42, 241, 385, 414, 991
BmrFI	CCNGG	2 cut(s)	35, 564
BmsI	GCATC	2 cut(s)	545, 893
BpiI	GAAGAC	1 cut(s)	744
BsaHI	GRCGYC	1 cut(s)	240
BsaI	GGTCTC	1 cut(s)	404
BsaJI	CCNNGG	3 cut(s)	33, 568, 985
Bsc4I	CCNNNNNNNGG	4 cut(s)	34, 249, 569, 894
Bse1I	ACTGG	1 cut(s)	499
Bse3DI	GCAATG	2 cut(s)	385, 804
BseBI	CCWGG	2 cut(s)	35, 564
BseDI	CCNNGG	3 cut(s)	33, 568, 985
BseGI	GGATG	2 cut(s)	196, 908
BseLI	CCNNNNNNNGG	4 cut(s)	34, 249, 569, 894
BseMI	GCAATG	2 cut(s)	385, 804
BseNI	ACTGG	1 cut(s)	499
BseRI	GAGGAG	1 cut(s)	231
BseXI	GCAGC	2 cut(s)	362, 654
BshFI	GGCC	4 cut(s)	88, 384, 567, 887
BshNI	GGYRCC	4 cut(s)	23, 40, 239, 989
BsiHKCI	CYCGRG	2 cut(s)	387, 462
BslFI	GGGAC	2 cut(s)	667, 1001
BslI	CCNNNNNNNGG	4 cut(s)	34, 249, 569, 894
BsmAI	GTCTC	1 cut(s)	404
BsmFI	GGGAC	2 cut(s)	667, 1001
BsnI	GGCC	4 cut(s)	88, 384, 567, 887
Bso31I	GGTCTC	1 cut(s)	404
BsoBI	CYCGRG	2 cut(s)	387, 462
Bsp1286I	GDGCHC	1 cut(s)	415
Bsp1407I	TGTACA	1 cut(s)	193
Bsp143I	GATC	5 cut(s)	455, 692, 711, 726, 943
Bsp19I	CCATGG	2 cut(s)	568, 985
BspACI	CCGC	5 cut(s)	261, 522, 558, 690, 900
BspANI	GGCC	4 cut(s)	88, 384, 567, 887
BspLI	GGNNCC	6 cut(s)	25, 42, 241, 385, 414, 991
BspPI	GGATC	3 cut(s)	700, 734, 951
BspT107I	GGYRCC	4 cut(s)	23, 40, 239, 989
BspTNI	GGTCTC	1 cut(s)	404
BsrDI	GCAATG	2 cut(s)	385, 804
BsrGI	TGTACA	1 cut(s)	193
BsrI	ACTGG	1 cut(s)	499
BssECI	CCNNGG	3 cut(s)	33, 568, 985
BssMI	GATC	5 cut(s)	455, 692, 711, 726, 943
BssNI	GRCGYC	1 cut(s)	240
BssT1I	CCWWGG	2 cut(s)	568, 985
Bst2UI	CCWGG	2 cut(s)	35, 564
Bst4CI	ACNGT	3 cut(s)	208, 425, 611
Bst6I	CTCTTC	2 cut(s)	615, 1000
BstACI	GRCGYC	1 cut(s)	240
BstAUI	TGTACA	1 cut(s)	193
BstC8I	GCNNGC	2 cut(s)	259, 889
BstDSI	CCRYGG	2 cut(s)	568, 985
BstF5I	GGATG	2 cut(s)	196, 908
BstH2I	RGCGCY	1 cut(s)	243
BstHHI	GCGC	2 cut(s)	242, 893
BstKTI	GATC	5 cut(s)	458, 695, 714, 729, 946
BstMAI	GTCTC	1 cut(s)	404
BstMBI	GATC	5 cut(s)	455, 692, 711, 726, 943
BstMWI	GCNNNNNNNGC	5 cut(s)	372, 381, 564, 642, 897
BstNI	CCWGG	2 cut(s)	35, 564
BstSCI	CCNGG	2 cut(s)	33, 562
BstV1I	GCAGC	2 cut(s)	362, 654
BstV2I	GAAGAC	1 cut(s)	744
BstX2I	RGATCY	1 cut(s)	943
BstXI	CCANNNNNNTGG	1 cut(s)	883
BstYI	RGATCY	1 cut(s)	943
BsuRI	GGCC	4 cut(s)	88, 384, 567, 887
BtgI	CCRYGG	2 cut(s)	568, 985
BtrI	CACGTC	1 cut(s)	832
BtsCI	GGATG	2 cut(s)	196, 908
BtsIMutI	CAGTG	1 cut(s)	861
Cac8I	GCNNGC	2 cut(s)	259, 889
CfoI	GCGC	2 cut(s)	242, 893
Cfr13I	GGNCC	3 cut(s)	86, 383, 560
Csp6I	GTAC	3 cut(s)	41, 194, 818
CviAII	CATG	6 cut(s)	311, 569, 599, 681, 986, 1020
CviQI	GTAC	3 cut(s)	41, 194, 818
DinI	GGCGCC	1 cut(s)	241
DpnI	GATC	5 cut(s)	457, 694, 713, 728, 945
DpnII	GATC	5 cut(s)	455, 692, 711, 726, 943
Eam1104I	CTCTTC	2 cut(s)	615, 1000
EarI	CTCTTC	2 cut(s)	615, 1000
EciI	GGCGGA	2 cut(s)	705, 915
Eco130I	CCWWGG	2 cut(s)	568, 985
Eco24I	GRGCYC	1 cut(s)	415
Eco31I	GGTCTC	1 cut(s)	404
Eco47I	GGWCC	1 cut(s)	560
Eco57I	CTGAAG	1 cut(s)	777
Eco88I	CYCGRG	2 cut(s)	387, 462
EcoO109I	RGGNCCY	1 cut(s)	86
EcoRII	CCWGG	2 cut(s)	33, 562
EcoT14I	CCWWGG	2 cut(s)	568, 985
EcoT38I	GRGCYC	1 cut(s)	415
EgeI	GGCGCC	1 cut(s)	241
EheI	GGCGCC	1 cut(s)	241
ErhI	CCWWGG	2 cut(s)	568, 985
FaeI	CATG	6 cut(s)	314, 572, 602, 684, 989, 1023
FalI	AAGNNNNNCTT	2 cut(s)	12, 44
FaqI	GGGAC	2 cut(s)	667, 1001
FatI	CATG	6 cut(s)	310, 568, 598, 680, 985, 1019
Fnu4HI	GCNGC	2 cut(s)	376, 643
FokI	GGATG	2 cut(s)	203, 915
FriOI	GRGCYC	1 cut(s)	415
Fsp4HI	GCNGC	2 cut(s)	376, 643
FspBI	CTAG	2 cut(s)	590, 705
FspI	TGCGCA	1 cut(s)	892
GlaI	GCGC	2 cut(s)	241, 892
GluI	GCNGC	2 cut(s)	376, 643
HaeII	RGCGCY	1 cut(s)	243
HaeIII	GGCC	4 cut(s)	88, 384, 567, 887
HhaI	GCGC	2 cut(s)	242, 893
Hin1I	GRCGYC	1 cut(s)	240
Hin1II	CATG	6 cut(s)	314, 572, 602, 684, 989, 1023
Hin6I	GCGC	2 cut(s)	240, 891
HinP1I	GCGC	2 cut(s)	240, 891
HindIII	AAGCTT	1 cut(s)	255
HinfI	GANTC	5 cut(s)	57, 178, 325, 465, 672
HphI	GGTGA	3 cut(s)	460, 509, 605
Hpy166II	GTNNAC	2 cut(s)	159, 596
Hpy188I	TCNGA	3 cut(s)	117, 190, 943
Hpy188III	TCNNGA	4 cut(s)	453, 538, 676, 696
Hpy8I	GTNNAC	2 cut(s)	159, 596
Hpy99I	CGWCG	1 cut(s)	833
HpyAV	CCTTC	4 cut(s)	77, 680, 1009, 1020
HpyCH4III	ACNGT	3 cut(s)	208, 425, 611
HpyCH4IV	ACGT	2 cut(s)	831, 927
HpyCH4V	TGCA	7 cut(s)	93, 137, 378, 628, 642, 861, 906
HpyF10VI	GCNNNNNNNGC	5 cut(s)	372, 381, 564, 642, 897
HpySE526I	ACGT	2 cut(s)	831, 927
Hsp92I	GRCGYC	1 cut(s)	240
Hsp92II	CATG	6 cut(s)	314, 572, 602, 684, 989, 1023
HspAI	GCGC	2 cut(s)	240, 891
KasI	GGCGCC	1 cut(s)	239
KpnI	GGTACC	1 cut(s)	44
Kzo9I	GATC	5 cut(s)	455, 692, 711, 726, 943
LmnI	GCTCC	1 cut(s)	418
Lsp1109I	GCAGC	2 cut(s)	362, 654
LweI	GCATC	2 cut(s)	545, 893
MaeI	CTAG	2 cut(s)	590, 705
MaeII	ACGT	2 cut(s)	831, 927
MaeIII	GTNAC	2 cut(s)	466, 832
MalI	GATC	5 cut(s)	457, 694, 713, 728, 945
MboI	GATC	5 cut(s)	455, 692, 711, 726, 943
MboII	GAAGA	6 cut(s)	471, 632, 721, 749, 938, 987
MfeI	CAATTG	2 cut(s)	320, 637
MflI	RGATCY	1 cut(s)	943
MhlI	GDGCHC	1 cut(s)	415
MluCI	AATT	7 cut(s)	109, 225, 320, 336, 405, 441, 637
Mly113I	GGCGCC	1 cut(s)	240
MlyI	GAGTC	2 cut(s)	334, 474
MnlI	CCTC	6 cut(s)	209, 212, 616, 715, 951, 1003
MseI	TTAA	3 cut(s)	65, 342, 404
MslI	CAYNNNNRTG	1 cut(s)	917
MspR9I	CCNGG	2 cut(s)	35, 564
MunI	CAATTG	2 cut(s)	320, 637
MvaI	CCWGG	2 cut(s)	35, 564
MwoI	GCNNNNNNNGC	5 cut(s)	372, 381, 564, 642, 897
NarI	GGCGCC	1 cut(s)	240
NcoI	CCATGG	2 cut(s)	568, 985
NdeII	GATC	5 cut(s)	455, 692, 711, 726, 943
NlaIII	CATG	6 cut(s)	314, 572, 602, 684, 989, 1023
NlaIV	GGNNCC	6 cut(s)	25, 42, 241, 385, 414, 991
NmuCI	GTSAC	2 cut(s)	466, 832
NsbI	TGCGCA	1 cut(s)	892
PfeI	GAWTC	3 cut(s)	57, 178, 672
PflMI	CCANNNNNTGG	1 cut(s)	569
PkrI	GCNGC	2 cut(s)	377, 644
PleI	GAGTC	2 cut(s)	333, 473
PluTI	GGCGCC	1 cut(s)	243
PpsI	GAGTC	2 cut(s)	333, 473
Psp6I	CCWGG	2 cut(s)	33, 562
PspGI	CCWGG	2 cut(s)	33, 562
PspN4I	GGNNCC	6 cut(s)	25, 42, 241, 385, 414, 991
PspPI	GGNCC	3 cut(s)	86, 383, 560
PsuI	RGATCY	1 cut(s)	943
RsaI	GTAC	3 cut(s)	42, 195, 819
RsaNI	GTAC	3 cut(s)	41, 194, 818
RseI	CAYNNNNRTG	1 cut(s)	917
SaqAI	TTAA	3 cut(s)	65, 342, 404
SatI	GCNGC	2 cut(s)	376, 643
Sau3AI	GATC	5 cut(s)	455, 692, 711, 726, 943
Sau96I	GGNCC	3 cut(s)	86, 383, 560
SchI	GAGTC	2 cut(s)	334, 474
ScrFI	CCNGG	2 cut(s)	35, 564
SduI	GDGCHC	1 cut(s)	415
SfaNI	GCATC	2 cut(s)	545, 893
SfoI	GGCGCC	1 cut(s)	241
SinI	GGWCC	1 cut(s)	560
SmiMI	CAYNNNNRTG	1 cut(s)	917
SmlI	CTYRAG	1 cut(s)	18
SmoI	CTYRAG	1 cut(s)	18
Sse9I	AATT	7 cut(s)	109, 225, 320, 336, 405, 441, 637
SsiI	CCGC	5 cut(s)	261, 522, 558, 690, 900
SspDI	GGCGCC	1 cut(s)	239
SspMI	CTAG	2 cut(s)	590, 705
StyD4I	CCNGG	2 cut(s)	33, 562
StyI	CCWWGG	2 cut(s)	568, 985
TaaI	ACNGT	3 cut(s)	208, 425, 611
TaiI	ACGT	2 cut(s)	834, 930
TaqI	TCGA	3 cut(s)	223, 720, 777
TasI	AATT	7 cut(s)	109, 225, 320, 336, 405, 441, 637
TatI	WGTACW	1 cut(s)	193
TfiI	GAWTC	3 cut(s)	57, 178, 672
Tru1I	TTAA	3 cut(s)	65, 342, 404
Tru9I	TTAA	3 cut(s)	65, 342, 404
TscAI	CASTG	1 cut(s)	868
TseFI	GTSAC	2 cut(s)	466, 832
TseI	GCWGC	2 cut(s)	375, 642
Tsp45I	GTSAC	2 cut(s)	466, 832
TspDTI	ATGAA	3 cut(s)	170, 516, 935
TspGWI	ACGGA	1 cut(s)	246
TspRI	CASTG	1 cut(s)	868
Van91I	CCANNNNNTGG	1 cut(s)	569
VpaK11BI	GGWCC	1 cut(s)	560
XapI	RAATTY	1 cut(s)	109
XspI	CTAG	2 cut(s)	590, 705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.