Glycosyl hydrolases family 28
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G17200 |
| fragaria_vesca | FvH4_1g02040 FvH4_7g04480 |
| malus_domestica | MD11G1182600.v1.1 |
| prunus_persica | Prupe.6G155200_v2.0.a1 Prupe.7G040000_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr1g0329731 RchiOBHm_Chr1g0329741 |
| rosa_laevigata | RLG00000007091 RLG00000029867 RLG00000029868 RLG00000030024 |
| rosa_multiflora | Rmu_sc0004219.1_g000003 Rmu_sc0017438.1_g000003 Rmu_sc0018130.1_g000001 Rmu_sc0033936.1_g000002 Rmu_sc0033936.1_g000003 |
| rosa_roxburghii | Rroxscaffold_2G00148230 Rroxscaffold_4G00320740 Rroxscaffold_4G00320750 Rroxscaffold_5G00370820 |
| rosa_rugosa | Rorug01G0082300 Rorug01G0082400.1 Rorug01G0082500 Rorug04G0233600 |
| rosa_samantha | Rh1AG100800 Rh1AG101000 Rh1AG101100 Rh1BG079900 Rh1BG080100 Rh1CG096200 Rh1CG096300 Rh1DG103900 Rh4AG289500 Rh4BG295500 Rh4CG311000 Rh4DG292400 |
| rosa_wichuraiana | Rw1G007960 Rw1G007970 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 122 |
| AclWI | GGATC | 2 cut(s) | 390, 403 |
| AcoI | YGGCCR | 1 cut(s) | 343 |
| AcsI | RAATTY | 3 cut(s) | 166, 308, 493 |
| AgsI | TTSAA | 2 cut(s) | 220, 313 |
| AjnI | CCWGG | 1 cut(s) | 498 |
| Alw26I | GTCTC | 1 cut(s) | 108 |
| AlwI | GGATC | 2 cut(s) | 390, 403 |
| AoxI | GGCC | 1 cut(s) | 343 |
| ApeKI | GCWGC | 3 cut(s) | 152, 155, 482 |
| ApoI | RAATTY | 3 cut(s) | 166, 308, 493 |
| AspLEI | GCGC | 1 cut(s) | 332 |
| AspS9I | GGNCC | 1 cut(s) | 470 |
| AsuHPI | GGTGA | 4 cut(s) | 48, 54, 152, 203 |
| AvaII | GGWCC | 1 cut(s) | 470 |
| BalI | TGGCCA | 1 cut(s) | 345 |
| BamHI | GGATCC | 1 cut(s) | 395 |
| BanI | GGYRCC | 1 cut(s) | 122 |
| BbvI | GCAGC | 3 cut(s) | 139, 142, 469 |
| BccI | CCATC | 1 cut(s) | 113 |
| BciT130I | CCWGG | 1 cut(s) | 500 |
| BclI | TGATCA | 2 cut(s) | 39, 142 |
| BcoDI | GTCTC | 1 cut(s) | 108 |
| BfoI | RGCGCY | 1 cut(s) | 333 |
| BisI | GCNGC | 3 cut(s) | 153, 156, 483 |
| BlsI | GCNGC | 3 cut(s) | 154, 157, 484 |
| Bme1390I | CCNGG | 1 cut(s) | 500 |
| Bme18I | GGWCC | 1 cut(s) | 470 |
| BmgT120I | GGNCC | 1 cut(s) | 470 |
| BmiI | GGNNCC | 3 cut(s) | 124, 397, 471 |
| BmrFI | CCNGG | 1 cut(s) | 500 |
| BmsI | GCATC | 2 cut(s) | 271, 417 |
| BpuEI | CTTGAG | 1 cut(s) | 387 |
| BseBI | CCWGG | 1 cut(s) | 500 |
| BseGI | GGATG | 1 cut(s) | 408 |
| BseXI | GCAGC | 3 cut(s) | 139, 142, 469 |
| BshFI | GGCC | 1 cut(s) | 345 |
| BshNI | GGYRCC | 1 cut(s) | 122 |
| BslFI | GGGAC | 1 cut(s) | 483 |
| BsmAI | GTCTC | 1 cut(s) | 108 |
| BsmBI | CGTCTC | 1 cut(s) | 108 |
| BsmFI | GGGAC | 1 cut(s) | 483 |
| BsmI | GAATGC | 1 cut(s) | 272 |
| BsnI | GGCC | 1 cut(s) | 345 |
| Bsp143I | GATC | 4 cut(s) | 39, 142, 290, 395 |
| BspANI | GGCC | 1 cut(s) | 345 |
| BspHI | TCATGA | 2 cut(s) | 36, 175 |
| BspLI | GGNNCC | 3 cut(s) | 124, 397, 471 |
| BspPI | GGATC | 2 cut(s) | 390, 403 |
| BspT107I | GGYRCC | 1 cut(s) | 122 |
| BssMI | GATC | 4 cut(s) | 39, 142, 290, 395 |
| Bst2UI | CCWGG | 1 cut(s) | 500 |
| BstF5I | GGATG | 1 cut(s) | 408 |
| BstH2I | RGCGCY | 1 cut(s) | 333 |
| BstHHI | GCGC | 1 cut(s) | 332 |
| BstKTI | GATC | 4 cut(s) | 42, 145, 293, 398 |
| BstMAI | GTCTC | 1 cut(s) | 108 |
| BstMBI | GATC | 4 cut(s) | 39, 142, 290, 395 |
| BstNI | CCWGG | 1 cut(s) | 500 |
| BstSCI | CCNGG | 1 cut(s) | 498 |
| BstV1I | GCAGC | 3 cut(s) | 139, 142, 469 |
| BstX2I | RGATCY | 1 cut(s) | 395 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 285 |
| BstYI | RGATCY | 1 cut(s) | 395 |
| BsuRI | GGCC | 1 cut(s) | 345 |
| BtsCI | GGATG | 1 cut(s) | 408 |
| CciI | TCATGA | 2 cut(s) | 36, 175 |
| CfoI | GCGC | 1 cut(s) | 332 |
| Cfr13I | GGNCC | 1 cut(s) | 470 |
| CviAII | CATG | 5 cut(s) | 37, 72, 176, 285, 378 |
| CviJI | RGCY | 3 cut(s) | 345, 365, 482 |
| CviKI_1 | RGCY | 3 cut(s) | 345, 365, 482 |
| DpnI | GATC | 4 cut(s) | 41, 144, 292, 397 |
| DpnII | GATC | 4 cut(s) | 39, 142, 290, 395 |
| EaeI | YGGCCR | 1 cut(s) | 343 |
| Eco47I | GGWCC | 1 cut(s) | 470 |
| EcoO109I | RGGNCCY | 1 cut(s) | 470 |
| EcoRI | GAATTC | 1 cut(s) | 308 |
| EcoRII | CCWGG | 1 cut(s) | 498 |
| EcoT22I | ATGCAT | 1 cut(s) | 286 |
| Esp3I | CGTCTC | 1 cut(s) | 108 |
| FaeI | CATG | 5 cut(s) | 40, 75, 179, 288, 381 |
| FaqI | GGGAC | 1 cut(s) | 483 |
| FatI | CATG | 5 cut(s) | 36, 71, 175, 284, 377 |
| FbaI | TGATCA | 2 cut(s) | 39, 142 |
| Fnu4HI | GCNGC | 3 cut(s) | 153, 156, 483 |
| FokI | GGATG | 1 cut(s) | 395 |
| Fsp4HI | GCNGC | 3 cut(s) | 153, 156, 483 |
| GlaI | GCGC | 1 cut(s) | 331 |
| GluI | GCNGC | 3 cut(s) | 153, 156, 483 |
| HaeII | RGCGCY | 1 cut(s) | 333 |
| HaeIII | GGCC | 1 cut(s) | 345 |
| HhaI | GCGC | 1 cut(s) | 332 |
| Hin1II | CATG | 5 cut(s) | 40, 75, 179, 288, 381 |
| Hin6I | GCGC | 1 cut(s) | 330 |
| HinP1I | GCGC | 1 cut(s) | 330 |
| HphI | GGTGA | 4 cut(s) | 48, 54, 152, 203 |
| Hpy188III | TCNNGA | 2 cut(s) | 37, 176 |
| HpyAV | CCTTC | 1 cut(s) | 69 |
| HpyCH4V | TGCA | 6 cut(s) | 203, 242, 284, 299, 477, 485 |
| Hsp92II | CATG | 5 cut(s) | 40, 75, 179, 288, 381 |
| HspAI | GCGC | 1 cut(s) | 330 |
| Ksp22I | TGATCA | 2 cut(s) | 39, 142 |
| Kzo9I | GATC | 4 cut(s) | 39, 142, 290, 395 |
| LpnPI | CCDG | 4 cut(s) | 91, 291, 485, 512 |
| Lsp1109I | GCAGC | 3 cut(s) | 139, 142, 469 |
| LweI | GCATC | 2 cut(s) | 271, 417 |
| MalI | GATC | 4 cut(s) | 41, 144, 292, 397 |
| MboI | GATC | 4 cut(s) | 39, 142, 290, 395 |
| MflI | RGATCY | 1 cut(s) | 395 |
| MlsI | TGGCCA | 1 cut(s) | 345 |
| MluCI | AATT | 6 cut(s) | 166, 308, 322, 451, 493, 514 |
| MluNI | TGGCCA | 1 cut(s) | 345 |
| MnlI | CCTC | 1 cut(s) | 246 |
| Mox20I | TGGCCA | 1 cut(s) | 345 |
| Mph1103I | ATGCAT | 1 cut(s) | 286 |
| MscI | TGGCCA | 1 cut(s) | 345 |
| MseI | TTAA | 3 cut(s) | 84, 110, 465 |
| Msp20I | TGGCCA | 1 cut(s) | 345 |
| MspR9I | CCNGG | 1 cut(s) | 500 |
| Mva1269I | GAATGC | 1 cut(s) | 272 |
| MvaI | CCWGG | 1 cut(s) | 500 |
| NdeII | GATC | 4 cut(s) | 39, 142, 290, 395 |
| NlaIII | CATG | 5 cut(s) | 40, 75, 179, 288, 381 |
| NlaIV | GGNNCC | 3 cut(s) | 124, 397, 471 |
| NsiI | ATGCAT | 1 cut(s) | 286 |
| PagI | TCATGA | 2 cut(s) | 36, 175 |
| PctI | GAATGC | 1 cut(s) | 272 |
| PkrI | GCNGC | 3 cut(s) | 154, 157, 484 |
| PpuMI | RGGWCCY | 1 cut(s) | 470 |
| Psp5II | RGGWCCY | 1 cut(s) | 470 |
| Psp6I | CCWGG | 1 cut(s) | 498 |
| PspGI | CCWGG | 1 cut(s) | 498 |
| PspN4I | GGNNCC | 3 cut(s) | 124, 397, 471 |
| PspPI | GGNCC | 1 cut(s) | 470 |
| PspPPI | RGGWCCY | 1 cut(s) | 470 |
| PsuI | RGATCY | 1 cut(s) | 395 |
| SaqAI | TTAA | 3 cut(s) | 84, 110, 465 |
| SatI | GCNGC | 3 cut(s) | 153, 156, 483 |
| Sau3AI | GATC | 4 cut(s) | 39, 142, 290, 395 |
| Sau96I | GGNCC | 1 cut(s) | 470 |
| ScrFI | CCNGG | 1 cut(s) | 500 |
| SetI | ASST | 3 cut(s) | 61, 475, 504 |
| SfaNI | GCATC | 2 cut(s) | 271, 417 |
| SinI | GGWCC | 1 cut(s) | 470 |
| SmlI | CTYRAG | 1 cut(s) | 402 |
| SmoI | CTYRAG | 1 cut(s) | 402 |
| Sse9I | AATT | 6 cut(s) | 166, 308, 322, 451, 493, 514 |
| StyD4I | CCNGG | 1 cut(s) | 498 |
| TaqI | TCGA | 1 cut(s) | 10 |
| TasI | AATT | 6 cut(s) | 166, 308, 322, 451, 493, 514 |
| Tru1I | TTAA | 3 cut(s) | 84, 110, 465 |
| Tru9I | TTAA | 3 cut(s) | 84, 110, 465 |
| TseI | GCWGC | 3 cut(s) | 152, 155, 482 |
| TspDTI | ATGAA | 5 cut(s) | 25, 60, 159, 164, 335 |
| VpaK11BI | GGWCC | 1 cut(s) | 470 |
| XapI | RAATTY | 3 cut(s) | 166, 308, 493 |
| Zsp2I | ATGCAT | 1 cut(s) | 286 |