Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033936.1

Orthogroup ID

OG0002703

Physical Location & Seq

Genomic Coordinates Reverse (-)

3593 .. 5939

Gene Structure 2347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033936.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

atgtttttgttcatgatcattatggttgcttcaccttcaccaagttcatgtgccagacttaatggttttcccacaacatatactttaagagacgatgataccattggttattatggtgatcaagttgctgctgcgacatcaaattcatttcatgataaggagtatggtgatgtttttgcaaccccaaatacattcaaagagtattatcgtcctcttgcaaatcgccaaactgatgatgatttacaagcattcccagatgcatggagatcacttgcaaaaagcgaattcaatgtgatgaattatggcgctgttgggaatggccaagttgatgatacacaattttatgatgttgaagggctgataatcaatggaggaggtcaaattgatggtcaaggtgaggtttggtggaaagtttgcgacaattcaaattgccaacgaccagcagctgttctccatatttaccagtgtgatggtctccgcttgagtgatattacacatattaatagtccgagaaaccatatattcatcatgggcagcaatggcgttcaaatttcagatatgcttattagggctcctgatgaaagtccaaacactgatggaattaaaatctctagatcaaccaatgttaacattcagaattcttttataggcactggtgacgactgtgttgcaatcatttctggttcatctcatatcaacattactaatgttatgtgtggtccaggccatggtataagtgttggaagtcttggtaaggaaggtgcttatagcacagtggaagatgtgcaagtgagaaactgcaccctgaagggaacacaaaatggagcaagaatcaagacatggcaaggcgggtcagggtatgctaggaacatcagttttgaggatatcataattcaagcagtcaagaaccccatcattataaaccagaagtatattgataagagcattgctggaactggaaccttgcttggccaaggaagtgctgtaaaagtgagcgatgtgacattccgtaacattcggggatctgttgctggggaaacagccattactttggactgtgacgatcaaattggttgcaaaaacattgtgatggataacatagacttaacttcatctgttcctggcaagaaggtttctgcccagtgcaagaacgttcaaggattttctacttcattatctcctagtgtgccatgcctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

399

Amino Acids

43.02

Weight (kDa)

5.07

Isoelectric Point (pI)

32.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17200
fragaria_vesca	FvH4_1g02040 FvH4_7g04480
malus_domestica	MD11G1182600.v1.1
prunus_persica	Prupe.6G155200_v2.0.a1 Prupe.7G040000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0329731 RchiOBHm_Chr1g0329741
rosa_laevigata	RLG00000007091 RLG00000029867 RLG00000029868 RLG00000030024
rosa_multiflora	Rmu_sc0004219.1_g000003 Rmu_sc0017438.1_g000003 Rmu_sc0018130.1_g000001 Rmu_sc0033936.1_g000002 Rmu_sc0033936.1_g000003
rosa_roxburghii	Rroxscaffold_2G00148230 Rroxscaffold_4G00320740 Rroxscaffold_4G00320750 Rroxscaffold_5G00370820
rosa_rugosa	Rorug01G0082300 Rorug01G0082400.1 Rorug01G0082500 Rorug04G0233600
rosa_samantha	Rh1AG100800 Rh1AG101000 Rh1AG101100 Rh1BG079900 Rh1BG080100 Rh1CG096200 Rh1CG096300 Rh1DG103900 Rh4AG289500 Rh4BG295500 Rh4CG311000 Rh4DG292400
rosa_wichuraiana	Rw1G007960 Rw1G007970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	920
AccB7I	CCANNNNNTGG	1 cut(s)	728
AciI	CCGC	2 cut(s)	478, 849
AclI	AACGTT	1 cut(s)	1152
AclWI	GGATC	1 cut(s)	1030
AcoI	YGGCCR	2 cut(s)	319, 970
AcsI	RAATTY	4 cut(s)	142, 284, 549, 637
AcuI	CTGAAG	1 cut(s)	827
AfiI	CCNNNNNNNGG	1 cut(s)	728
AgsI	TTSAA	7 cut(s)	196, 289, 353, 426, 548, 896, 1157
AjnI	CCWGG	2 cut(s)	721, 1120
AluBI	AGCT	1 cut(s)	446
AluI	AGCT	1 cut(s)	446
Alw26I	GTCTC	2 cut(s)	84, 479
AlwI	GGATC	1 cut(s)	1030
AlwNI	CAGNNNCTG	1 cut(s)	446
AoxI	GGCC	3 cut(s)	319, 724, 970
ApeKI	GCWGC	4 cut(s)	128, 131, 443, 534
ApoI	RAATTY	4 cut(s)	142, 284, 549, 637
ArsI	GACNNNNNNTTYG	2 cut(s)	373, 405
AseI	ATTAAT	1 cut(s)	501
AspLEI	GCGC	1 cut(s)	308
AspS9I	GGNCC	1 cut(s)	719
AsuHPI	GGTGA	6 cut(s)	24, 30, 128, 179, 407, 668
AvaII	GGWCC	1 cut(s)	719
BalI	TGGCCA	2 cut(s)	321, 972
BanII	GRGCYC	1 cut(s)	574
BbvI	GCAGC	4 cut(s)	115, 118, 455, 546
BccI	CCATC	5 cut(s)	380, 464, 590, 920, 1084
BcgI	CGANNNNNNTGC	2 cut(s)	650, 684
BciT130I	CCWGG	2 cut(s)	723, 1122
BclI	TGATCA	2 cut(s)	15, 118
BcoDI	GTCTC	2 cut(s)	84, 479
BfaI	CTAG	3 cut(s)	612, 864, 1182
BfoI	RGCGCY	1 cut(s)	309
BisI	GCNGC	4 cut(s)	129, 132, 444, 535
BlsI	GCNGC	4 cut(s)	130, 133, 445, 536
Bme1390I	CCNGG	2 cut(s)	723, 1122
Bme18I	GGWCC	1 cut(s)	719
BmgT120I	GGNCC	1 cut(s)	719
BmiI	GGNNCC	2 cut(s)	573, 961
BmrFI	CCNGG	2 cut(s)	723, 1122
BmrI	ACTGGG	1 cut(s)	1135
BmsI	GCATC	1 cut(s)	247
BmuI	ACTGGG	1 cut(s)	1135
BpuEI	CTTGAG	1 cut(s)	502
BsaI	GGTCTC	1 cut(s)	479
BsaJI	CCNNGG	2 cut(s)	727, 973
Bsc4I	CCNNNNNNNGG	1 cut(s)	728
Bse1I	ACTGG	4 cut(s)	463, 658, 961, 1141
Bse3DI	GCAATG	2 cut(s)	544, 945
BseBI	CCWGG	2 cut(s)	723, 1122
BseDI	CCNNGG	2 cut(s)	727, 973
BseLI	CCNNNNNNNGG	1 cut(s)	728
BseMI	GCAATG	2 cut(s)	544, 945
BseNI	ACTGG	4 cut(s)	463, 658, 961, 1141
BseRI	GAGGAG	1 cut(s)	387
BseXI	GCAGC	4 cut(s)	115, 118, 455, 546
BseYI	CCCAGC	1 cut(s)	1031
BsgI	GTGCAG	1 cut(s)	784
BshFI	GGCC	3 cut(s)	321, 726, 972
BslI	CCNNNNNNNGG	1 cut(s)	728
BsmAI	GTCTC	2 cut(s)	84, 479
BsmBI	CGTCTC	1 cut(s)	84
BsmI	GAATGC	1 cut(s)	248
BsnI	GGCC	3 cut(s)	321, 726, 972
Bso31I	GGTCTC	1 cut(s)	479
Bsp1286I	GDGCHC	1 cut(s)	574
Bsp143I	GATC	6 cut(s)	15, 118, 266, 614, 1022, 1063
Bsp19I	CCATGG	1 cut(s)	727
BspACI	CCGC	2 cut(s)	478, 849
BspANI	GGCC	3 cut(s)	321, 726, 972
BspHI	TCATGA	2 cut(s)	12, 151
BspLI	GGNNCC	2 cut(s)	573, 961
BspPI	GGATC	1 cut(s)	1030
BspTNI	GGTCTC	1 cut(s)	479
BsrDI	GCAATG	2 cut(s)	544, 945
BsrI	ACTGG	4 cut(s)	463, 658, 961, 1141
BssECI	CCNNGG	2 cut(s)	727, 973
BssMI	GATC	6 cut(s)	15, 118, 266, 614, 1022, 1063
BssT1I	CCWWGG	2 cut(s)	727, 973
Bst2UI	CCWGG	2 cut(s)	723, 1122
Bst4CI	ACNGT	3 cut(s)	665, 775, 1058
BstDSI	CCRYGG	1 cut(s)	727
BstH2I	RGCGCY	1 cut(s)	309
BstHHI	GCGC	1 cut(s)	308
BstKTI	GATC	6 cut(s)	18, 121, 269, 617, 1025, 1066
BstMAI	GTCTC	2 cut(s)	84, 479
BstMBI	GATC	6 cut(s)	15, 118, 266, 614, 1022, 1063
BstMWI	GCNNNNNNNGC	1 cut(s)	540
BstNI	CCWGG	2 cut(s)	723, 1122
BstSCI	CCNGG	2 cut(s)	721, 1120
BstV1I	GCAGC	4 cut(s)	115, 118, 455, 546
BstX2I	RGATCY	1 cut(s)	1022
BstXI	CCANNNNNNTGG	3 cut(s)	261, 470, 1051
BstYI	RGATCY	1 cut(s)	1022
BsuRI	GGCC	3 cut(s)	321, 726, 972
BtgI	CCRYGG	1 cut(s)	727
BtgZI	GCGATG	1 cut(s)	1011
BtsIMutI	CAGTG	5 cut(s)	470, 591, 651, 780, 1148
CaiI	CAGNNNCTG	1 cut(s)	446
CciI	TCATGA	2 cut(s)	12, 151
CfoI	GCGC	1 cut(s)	308
Cfr13I	GGNCC	1 cut(s)	719
CviAII	CATG	8 cut(s)	13, 48, 152, 261, 529, 728, 840, 1191
CviJI	RGCY	7 cut(s)	321, 358, 446, 572, 726, 972, 1043
CviKI_1	RGCY	7 cut(s)	321, 358, 446, 572, 726, 972, 1043
DpnI	GATC	6 cut(s)	17, 120, 268, 616, 1024, 1065
DpnII	GATC	6 cut(s)	15, 118, 266, 614, 1022, 1063
EaeI	YGGCCR	2 cut(s)	319, 970
Eco130I	CCWWGG	2 cut(s)	727, 973
Eco24I	GRGCYC	1 cut(s)	574
Eco31I	GGTCTC	1 cut(s)	479
Eco32I	GATATC	1 cut(s)	886
Eco47I	GGWCC	1 cut(s)	719
Eco57I	CTGAAG	1 cut(s)	827
EcoRI	GAATTC	2 cut(s)	284, 637
EcoRII	CCWGG	2 cut(s)	721, 1120
EcoRV	GATATC	1 cut(s)	886
EcoT14I	CCWWGG	2 cut(s)	727, 973
EcoT22I	ATGCAT	1 cut(s)	262
EcoT38I	GRGCYC	1 cut(s)	574
ErhI	CCWWGG	2 cut(s)	727, 973
Esp3I	CGTCTC	1 cut(s)	84
FaeI	CATG	8 cut(s)	16, 51, 155, 264, 532, 731, 843, 1194
FatI	CATG	8 cut(s)	12, 47, 151, 260, 528, 727, 839, 1190
FauI	CCCGC	1 cut(s)	842
FbaI	TGATCA	2 cut(s)	15, 118
Fnu4HI	GCNGC	4 cut(s)	129, 132, 444, 535
FriOI	GRGCYC	1 cut(s)	574
Fsp4HI	GCNGC	4 cut(s)	129, 132, 444, 535
FspBI	CTAG	3 cut(s)	612, 864, 1182
GlaI	GCGC	1 cut(s)	307
GluI	GCNGC	4 cut(s)	129, 132, 444, 535
GsaI	CCCAGC	1 cut(s)	1035
HaeII	RGCGCY	1 cut(s)	309
HaeIII	GGCC	3 cut(s)	321, 726, 972
HhaI	GCGC	1 cut(s)	308
Hin1II	CATG	8 cut(s)	16, 51, 155, 264, 532, 731, 843, 1194
Hin6I	GCGC	1 cut(s)	306
HinP1I	GCGC	1 cut(s)	306
HincII	GTYRAC	1 cut(s)	628
HindII	GTYRAC	1 cut(s)	628
HinfI	GANTC	1 cut(s)	831
HpaI	GTTAAC	1 cut(s)	628
HphI	GGTGA	6 cut(s)	24, 30, 128, 179, 407, 668
Hpy166II	GTNNAC	1 cut(s)	628
Hpy188I	TCNGA	3 cut(s)	510, 556, 636
Hpy188III	TCNNGA	6 cut(s)	13, 152, 575, 612, 835, 904
Hpy8I	GTNNAC	1 cut(s)	628
HpyAV	CCTTC	5 cut(s)	45, 347, 752, 802, 1123
HpyCH4III	ACNGT	3 cut(s)	665, 775, 1058
HpyCH4IV	ACGT	1 cut(s)	1152
HpyCH4V	TGCA	9 cut(s)	179, 218, 260, 275, 671, 787, 801, 1077, 1146
HpyF10VI	GCNNNNNNNGC	1 cut(s)	540
HpySE526I	ACGT	1 cut(s)	1152
Hsp92II	CATG	8 cut(s)	16, 51, 155, 264, 532, 731, 843, 1194
HspAI	GCGC	1 cut(s)	306
Ksp22I	TGATCA	2 cut(s)	15, 118
KspAI	GTTAAC	1 cut(s)	628
Kzo9I	GATC	6 cut(s)	15, 118, 266, 614, 1022, 1063
LmnI	GCTCC	2 cut(s)	577, 824
Lsp1109I	GCAGC	4 cut(s)	115, 118, 455, 546
LweI	GCATC	1 cut(s)	247
MaeI	CTAG	3 cut(s)	612, 864, 1182
MaeII	ACGT	1 cut(s)	1152
MaeIII	GTNAC	4 cut(s)	656, 1000, 1010, 1058
MalI	GATC	6 cut(s)	17, 120, 268, 616, 1024, 1065
MboI	GATC	6 cut(s)	15, 118, 266, 614, 1022, 1063
MboII	GAAGA	1 cut(s)	791
MflI	RGATCY	1 cut(s)	1022
MhlI	GDGCHC	1 cut(s)	574
MlsI	TGGCCA	2 cut(s)	321, 972
MluNI	TGGCCA	2 cut(s)	321, 972
MmeI	TCCRAC	1 cut(s)	721
MnlI	CCTC	5 cut(s)	222, 365, 368, 391, 874
Mox20I	TGGCCA	2 cut(s)	321, 972
Mph1103I	ATGCAT	1 cut(s)	262
MscI	TGGCCA	2 cut(s)	321, 972
MseI	TTAA	7 cut(s)	60, 86, 501, 603, 627, 1106, 1198
MslI	CAYNNNNRTG	1 cut(s)	1088
Msp20I	TGGCCA	2 cut(s)	321, 972
MspA1I	CMGCKG	1 cut(s)	446
MspR9I	CCNGG	2 cut(s)	723, 1122
Mva1269I	GAATGC	1 cut(s)	248
MvaI	CCWGG	2 cut(s)	723, 1122
MwoI	GCNNNNNNNGC	1 cut(s)	540
NcoI	CCATGG	1 cut(s)	727
NdeII	GATC	6 cut(s)	15, 118, 266, 614, 1022, 1063
NlaIII	CATG	8 cut(s)	16, 51, 155, 264, 532, 731, 843, 1194
NlaIV	GGNNCC	2 cut(s)	573, 961
NmuCI	GTSAC	3 cut(s)	656, 1000, 1058
NsiI	ATGCAT	1 cut(s)	262
PagI	TCATGA	2 cut(s)	12, 151
PctI	GAATGC	1 cut(s)	248
PfeI	GAWTC	1 cut(s)	831
PflMI	CCANNNNNTGG	1 cut(s)	728
PkrI	GCNGC	4 cut(s)	130, 133, 445, 536
PshBI	ATTAAT	1 cut(s)	501
PsiI	TTATAA	1 cut(s)	920
Psp1406I	AACGTT	1 cut(s)	1152
Psp6I	CCWGG	2 cut(s)	721, 1120
PspFI	CCCAGC	1 cut(s)	1031
PspGI	CCWGG	2 cut(s)	721, 1120
PspN4I	GGNNCC	2 cut(s)	573, 961
PspPI	GGNCC	1 cut(s)	719
PstNI	CAGNNNCTG	1 cut(s)	446
PsuI	RGATCY	1 cut(s)	1022
PvuII	CAGCTG	1 cut(s)	446
RseI	CAYNNNNRTG	1 cut(s)	1088
SaqAI	TTAA	7 cut(s)	60, 86, 501, 603, 627, 1106, 1198
SatI	GCNGC	4 cut(s)	129, 132, 444, 535
Sau3AI	GATC	6 cut(s)	15, 118, 266, 614, 1022, 1063
Sau96I	GGNCC	1 cut(s)	719
ScrFI	CCNGG	2 cut(s)	723, 1122
SduI	GDGCHC	1 cut(s)	574
SetI	ASST	9 cut(s)	37, 379, 397, 402, 448, 763, 965, 1134, 1155
SfaNI	GCATC	1 cut(s)	247
SinI	GGWCC	1 cut(s)	719
SmiMI	CAYNNNNRTG	1 cut(s)	1088
SmlI	CTYRAG	1 cut(s)	481
SmoI	CTYRAG	1 cut(s)	481
SsiI	CCGC	2 cut(s)	478, 849
SspMI	CTAG	3 cut(s)	612, 864, 1182
StyD4I	CCNGG	2 cut(s)	721, 1120
StyI	CCWWGG	2 cut(s)	727, 973
TaaI	ACNGT	3 cut(s)	665, 775, 1058
TaiI	ACGT	1 cut(s)	1155
TfiI	GAWTC	1 cut(s)	831
Tru1I	TTAA	7 cut(s)	60, 86, 501, 603, 627, 1106, 1198
Tru9I	TTAA	7 cut(s)	60, 86, 501, 603, 627, 1106, 1198
TscAI	CASTG	5 cut(s)	470, 598, 658, 780, 1148
TseFI	GTSAC	3 cut(s)	656, 1000, 1058
TseI	GCWGC	4 cut(s)	128, 131, 443, 534
Tsp45I	GTSAC	3 cut(s)	656, 1000, 1058
TspDTI	ATGAA	9 cut(s)	36, 135, 140, 311, 514, 594, 675, 1101, 1161
TspGWI	ACGGA	1 cut(s)	998
TspRI	CASTG	5 cut(s)	470, 598, 658, 780, 1148
Van91I	CCANNNNNTGG	1 cut(s)	728
VpaK11BI	GGWCC	1 cut(s)	719
VspI	ATTAAT	1 cut(s)	501
XapI	RAATTY	4 cut(s)	142, 284, 549, 637
XbaI	TCTAGA	1 cut(s)	611
XspI	CTAG	3 cut(s)	612, 864, 1182
Zsp2I	ATGCAT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.