Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033936.1

Orthogroup ID

OG0002703

Physical Location & Seq

Genomic Coordinates Forward (+)

7049 .. 9391

Gene Structure 2343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033936.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

atgtttttgttcatgatcattatggttgcttcaccttcaccaagttcatgtgccagacttaatggttttcccacaacatatactttaagagacgatgataccattggttattatggtgatcaagttgctgctgcgacatcaaattcatttcatgataaggagtatggtgatgtttttgcaaccccaaatacattcaaagagtattatcgtcctcttgcaaatcgccaaactgatgatgatttacaagcattcccagatgcatggagatcacttgcaaaaagcgaattcaatgtgatgaattatggcgctgttgggaatggccaagttgatgatacacaatttgatgatgttcaaggtctgataatcaatggaggaggtcaaattgatggtcaaggtcaggtttggtggaaagtttgcgacactacaaattgccaacgaccaactgttctccatatttaccagtgtgatggtctccgcttgagtgatattacacatattaatagtccgagaaaccatatattcatcatgggcagcaatggcgttcaaatttcagatatgcttattagggctcctgatgaaagtccaaacactgatggaattgacatctctgcatcaaccaatattaacattcacaattcttttataggcactggtgacgactgtgttgcaatcatttctggttcatctcatatcaacattactaatgttatgtgtggtccaggccatggtataagtgttggaagtcttggtaaggaaggtgcttatagcacagtggaagatgtgcaagtgagaaactgcaccttcaacggaacacaaaatggagcaagaatcaagacatggcaaggcgggtcagggtatgctaggaacatcagttttgaggatatcataattcaagcagtcaagaaccccatcattataaaccagaagtatattgataagagcattgctggaactggaaccttgcttggccaaggaagtgctgtaaaagtgagcgatgtgacattccgtaacattcggggatctgttgctggggaaacagccattactttggactgtgacgatcaaattggttgcaaaaacattgtgatggataacatagacttaacttcatctgttcctggcaagaaggtttctgcccagtgcaagaacgttcaaggattttctacttcattatctcctagtgtgccatgcctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

398

Amino Acids

42.87

Weight (kDa)

4.88

Isoelectric Point (pI)

31.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17200
fragaria_vesca	FvH4_1g02040 FvH4_7g04480
malus_domestica	MD11G1182600.v1.1
prunus_persica	Prupe.6G155200_v2.0.a1 Prupe.7G040000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0329731 RchiOBHm_Chr1g0329741
rosa_laevigata	RLG00000007091 RLG00000029867 RLG00000029868 RLG00000030024
rosa_multiflora	Rmu_sc0004219.1_g000003 Rmu_sc0017438.1_g000003 Rmu_sc0018130.1_g000001 Rmu_sc0033936.1_g000002 Rmu_sc0033936.1_g000003
rosa_roxburghii	Rroxscaffold_2G00148230 Rroxscaffold_4G00320740 Rroxscaffold_4G00320750 Rroxscaffold_5G00370820
rosa_rugosa	Rorug01G0082300 Rorug01G0082400.1 Rorug01G0082500 Rorug04G0233600
rosa_samantha	Rh1AG100800 Rh1AG101000 Rh1AG101100 Rh1BG079900 Rh1BG080100 Rh1CG096200 Rh1CG096300 Rh1DG103900 Rh4AG289500 Rh4BG295500 Rh4CG311000 Rh4DG292400
rosa_wichuraiana	Rw1G007960 Rw1G007970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	917
AccB7I	CCANNNNNTGG	1 cut(s)	725
AciI	CCGC	2 cut(s)	475, 846
AclI	AACGTT	1 cut(s)	1149
AclWI	GGATC	1 cut(s)	1027
AcoI	YGGCCR	2 cut(s)	319, 967
AcsI	RAATTY	3 cut(s)	142, 284, 546
AfiI	CCNNNNNNNGG	1 cut(s)	725
AgsI	TTSAA	7 cut(s)	196, 289, 353, 545, 805, 893, 1154
AjnI	CCWGG	2 cut(s)	718, 1117
Alw26I	GTCTC	2 cut(s)	84, 476
AlwI	GGATC	1 cut(s)	1027
AoxI	GGCC	3 cut(s)	319, 721, 967
ApeKI	GCWGC	3 cut(s)	128, 131, 531
ApoI	RAATTY	3 cut(s)	142, 284, 546
ArsI	GACNNNNNNTTYG	2 cut(s)	373, 405
AseI	ATTAAT	1 cut(s)	498
AspLEI	GCGC	1 cut(s)	308
AspS9I	GGNCC	1 cut(s)	716
AsuHPI	GGTGA	5 cut(s)	24, 30, 128, 179, 665
AvaII	GGWCC	1 cut(s)	716
BalI	TGGCCA	2 cut(s)	321, 969
BanII	GRGCYC	1 cut(s)	571
BbvI	GCAGC	3 cut(s)	115, 118, 543
BccI	CCATC	5 cut(s)	380, 461, 587, 917, 1081
BcgI	CGANNNNNNTGC	2 cut(s)	647, 681
BciT130I	CCWGG	2 cut(s)	720, 1119
BclI	TGATCA	2 cut(s)	15, 118
BcoDI	GTCTC	2 cut(s)	84, 476
BfaI	CTAG	2 cut(s)	861, 1179
BfoI	RGCGCY	1 cut(s)	309
BisI	GCNGC	3 cut(s)	129, 132, 532
BlsI	GCNGC	3 cut(s)	130, 133, 533
Bme1390I	CCNGG	2 cut(s)	720, 1119
Bme18I	GGWCC	1 cut(s)	716
BmgT120I	GGNCC	1 cut(s)	716
BmiI	GGNNCC	2 cut(s)	570, 958
BmrFI	CCNGG	2 cut(s)	720, 1119
BmrI	ACTGGG	1 cut(s)	1132
BmsI	GCATC	2 cut(s)	247, 620
BmuI	ACTGGG	1 cut(s)	1132
BpuEI	CTTGAG	1 cut(s)	499
BsaI	GGTCTC	1 cut(s)	476
BsaJI	CCNNGG	2 cut(s)	724, 970
Bsc4I	CCNNNNNNNGG	1 cut(s)	725
Bse1I	ACTGG	4 cut(s)	460, 655, 958, 1138
Bse3DI	GCAATG	2 cut(s)	541, 942
BseBI	CCWGG	2 cut(s)	720, 1119
BseDI	CCNNGG	2 cut(s)	724, 970
BseLI	CCNNNNNNNGG	1 cut(s)	725
BseMI	GCAATG	2 cut(s)	541, 942
BseNI	ACTGG	4 cut(s)	460, 655, 958, 1138
BseRI	GAGGAG	1 cut(s)	387
BseXI	GCAGC	3 cut(s)	115, 118, 543
BseYI	CCCAGC	1 cut(s)	1028
BsgI	GTGCAG	1 cut(s)	781
BshFI	GGCC	3 cut(s)	321, 723, 969
BslI	CCNNNNNNNGG	1 cut(s)	725
BsmAI	GTCTC	2 cut(s)	84, 476
BsmBI	CGTCTC	1 cut(s)	84
BsmI	GAATGC	1 cut(s)	248
BsnI	GGCC	3 cut(s)	321, 723, 969
Bso31I	GGTCTC	1 cut(s)	476
Bsp1286I	GDGCHC	1 cut(s)	571
Bsp143I	GATC	5 cut(s)	15, 118, 266, 1019, 1060
Bsp19I	CCATGG	1 cut(s)	724
BspACI	CCGC	2 cut(s)	475, 846
BspANI	GGCC	3 cut(s)	321, 723, 969
BspHI	TCATGA	2 cut(s)	12, 151
BspLI	GGNNCC	2 cut(s)	570, 958
BspPI	GGATC	1 cut(s)	1027
BspTNI	GGTCTC	1 cut(s)	476
BsrDI	GCAATG	2 cut(s)	541, 942
BsrI	ACTGG	4 cut(s)	460, 655, 958, 1138
BssECI	CCNNGG	2 cut(s)	724, 970
BssMI	GATC	5 cut(s)	15, 118, 266, 1019, 1060
BssT1I	CCWWGG	2 cut(s)	724, 970
Bst2UI	CCWGG	2 cut(s)	720, 1119
Bst4CI	ACNGT	4 cut(s)	445, 662, 772, 1055
BstDSI	CCRYGG	1 cut(s)	724
BstH2I	RGCGCY	1 cut(s)	309
BstHHI	GCGC	1 cut(s)	308
BstKTI	GATC	5 cut(s)	18, 121, 269, 1022, 1063
BstMAI	GTCTC	2 cut(s)	84, 476
BstMBI	GATC	5 cut(s)	15, 118, 266, 1019, 1060
BstMWI	GCNNNNNNNGC	1 cut(s)	537
BstNI	CCWGG	2 cut(s)	720, 1119
BstSCI	CCNGG	2 cut(s)	718, 1117
BstV1I	GCAGC	3 cut(s)	115, 118, 543
BstX2I	RGATCY	1 cut(s)	1019
BstXI	CCANNNNNNTGG	3 cut(s)	261, 467, 1048
BstYI	RGATCY	1 cut(s)	1019
BsuRI	GGCC	3 cut(s)	321, 723, 969
BtgI	CCRYGG	1 cut(s)	724
BtgZI	GCGATG	1 cut(s)	1008
BtsIMutI	CAGTG	5 cut(s)	467, 588, 648, 777, 1145
CciI	TCATGA	2 cut(s)	12, 151
CfoI	GCGC	1 cut(s)	308
Cfr13I	GGNCC	1 cut(s)	716
CviAII	CATG	8 cut(s)	13, 48, 152, 261, 526, 725, 837, 1188
CviJI	RGCY	5 cut(s)	321, 569, 723, 969, 1040
CviKI_1	RGCY	5 cut(s)	321, 569, 723, 969, 1040
DpnI	GATC	5 cut(s)	17, 120, 268, 1021, 1062
DpnII	GATC	5 cut(s)	15, 118, 266, 1019, 1060
EaeI	YGGCCR	2 cut(s)	319, 967
Eco130I	CCWWGG	2 cut(s)	724, 970
Eco24I	GRGCYC	1 cut(s)	571
Eco31I	GGTCTC	1 cut(s)	476
Eco32I	GATATC	1 cut(s)	883
Eco47I	GGWCC	1 cut(s)	716
EcoRI	GAATTC	1 cut(s)	284
EcoRII	CCWGG	2 cut(s)	718, 1117
EcoRV	GATATC	1 cut(s)	883
EcoT14I	CCWWGG	2 cut(s)	724, 970
EcoT22I	ATGCAT	1 cut(s)	262
EcoT38I	GRGCYC	1 cut(s)	571
ErhI	CCWWGG	2 cut(s)	724, 970
Esp3I	CGTCTC	1 cut(s)	84
FaeI	CATG	8 cut(s)	16, 51, 155, 264, 529, 728, 840, 1191
FatI	CATG	8 cut(s)	12, 47, 151, 260, 525, 724, 836, 1187
FauI	CCCGC	1 cut(s)	839
FbaI	TGATCA	2 cut(s)	15, 118
Fnu4HI	GCNGC	3 cut(s)	129, 132, 532
FriOI	GRGCYC	1 cut(s)	571
Fsp4HI	GCNGC	3 cut(s)	129, 132, 532
FspBI	CTAG	2 cut(s)	861, 1179
GlaI	GCGC	1 cut(s)	307
GluI	GCNGC	3 cut(s)	129, 132, 532
GsaI	CCCAGC	1 cut(s)	1032
HaeII	RGCGCY	1 cut(s)	309
HaeIII	GGCC	3 cut(s)	321, 723, 969
HhaI	GCGC	1 cut(s)	308
Hin1II	CATG	8 cut(s)	16, 51, 155, 264, 529, 728, 840, 1191
Hin6I	GCGC	1 cut(s)	306
HinP1I	GCGC	1 cut(s)	306
HinfI	GANTC	1 cut(s)	828
HphI	GGTGA	5 cut(s)	24, 30, 128, 179, 665
Hpy188I	TCNGA	3 cut(s)	360, 507, 553
Hpy188III	TCNNGA	5 cut(s)	13, 152, 572, 832, 901
HpyAV	CCTTC	4 cut(s)	45, 749, 811, 1120
HpyCH4III	ACNGT	4 cut(s)	445, 662, 772, 1055
HpyCH4IV	ACGT	1 cut(s)	1149
HpyF10VI	GCNNNNNNNGC	1 cut(s)	537
HpySE526I	ACGT	1 cut(s)	1149
Hsp92II	CATG	8 cut(s)	16, 51, 155, 264, 529, 728, 840, 1191
HspAI	GCGC	1 cut(s)	306
Ksp22I	TGATCA	2 cut(s)	15, 118
Kzo9I	GATC	5 cut(s)	15, 118, 266, 1019, 1060
LmnI	GCTCC	2 cut(s)	574, 821
Lsp1109I	GCAGC	3 cut(s)	115, 118, 543
LweI	GCATC	2 cut(s)	247, 620
MaeI	CTAG	2 cut(s)	861, 1179
MaeII	ACGT	1 cut(s)	1149
MaeIII	GTNAC	4 cut(s)	653, 997, 1007, 1055
MalI	GATC	5 cut(s)	17, 120, 268, 1021, 1062
MboI	GATC	5 cut(s)	15, 118, 266, 1019, 1060
MboII	GAAGA	1 cut(s)	788
MflI	RGATCY	1 cut(s)	1019
MhlI	GDGCHC	1 cut(s)	571
MlsI	TGGCCA	2 cut(s)	321, 969
MluNI	TGGCCA	2 cut(s)	321, 969
MmeI	TCCRAC	1 cut(s)	718
MnlI	CCTC	4 cut(s)	222, 365, 368, 871
Mox20I	TGGCCA	2 cut(s)	321, 969
Mph1103I	ATGCAT	1 cut(s)	262
MscI	TGGCCA	2 cut(s)	321, 969
MseI	TTAA	6 cut(s)	60, 86, 498, 624, 1103, 1195
MslI	CAYNNNNRTG	1 cut(s)	1085
Msp20I	TGGCCA	2 cut(s)	321, 969
MspR9I	CCNGG	2 cut(s)	720, 1119
Mva1269I	GAATGC	1 cut(s)	248
MvaI	CCWGG	2 cut(s)	720, 1119
MwoI	GCNNNNNNNGC	1 cut(s)	537
NcoI	CCATGG	1 cut(s)	724
NdeII	GATC	5 cut(s)	15, 118, 266, 1019, 1060
NlaIII	CATG	8 cut(s)	16, 51, 155, 264, 529, 728, 840, 1191
NlaIV	GGNNCC	2 cut(s)	570, 958
NmuCI	GTSAC	3 cut(s)	653, 997, 1055
NsiI	ATGCAT	1 cut(s)	262
PagI	TCATGA	2 cut(s)	12, 151
PctI	GAATGC	1 cut(s)	248
PfeI	GAWTC	1 cut(s)	828
PflMI	CCANNNNNTGG	1 cut(s)	725
PkrI	GCNGC	3 cut(s)	130, 133, 533
PshBI	ATTAAT	1 cut(s)	498
PsiI	TTATAA	1 cut(s)	917
Psp1406I	AACGTT	1 cut(s)	1149
Psp6I	CCWGG	2 cut(s)	718, 1117
PspFI	CCCAGC	1 cut(s)	1028
PspGI	CCWGG	2 cut(s)	718, 1117
PspN4I	GGNNCC	2 cut(s)	570, 958
PspPI	GGNCC	1 cut(s)	716
PsuI	RGATCY	1 cut(s)	1019
RseI	CAYNNNNRTG	1 cut(s)	1085
SaqAI	TTAA	6 cut(s)	60, 86, 498, 624, 1103, 1195
SatI	GCNGC	3 cut(s)	129, 132, 532
Sau3AI	GATC	5 cut(s)	15, 118, 266, 1019, 1060
Sau96I	GGNCC	1 cut(s)	716
ScrFI	CCNGG	2 cut(s)	720, 1119
SduI	GDGCHC	1 cut(s)	571
SfaNI	GCATC	2 cut(s)	247, 620
SinI	GGWCC	1 cut(s)	716
SmiMI	CAYNNNNRTG	1 cut(s)	1085
SmlI	CTYRAG	1 cut(s)	478
SmoI	CTYRAG	1 cut(s)	478
SsiI	CCGC	2 cut(s)	475, 846
SspI	AATATT	1 cut(s)	622
SspMI	CTAG	2 cut(s)	861, 1179
StyD4I	CCNGG	2 cut(s)	718, 1117
StyI	CCWWGG	2 cut(s)	724, 970
TaaI	ACNGT	4 cut(s)	445, 662, 772, 1055
TaiI	ACGT	1 cut(s)	1152
TfiI	GAWTC	1 cut(s)	828
Tru1I	TTAA	6 cut(s)	60, 86, 498, 624, 1103, 1195
Tru9I	TTAA	6 cut(s)	60, 86, 498, 624, 1103, 1195
TscAI	CASTG	5 cut(s)	467, 595, 655, 777, 1145
TseFI	GTSAC	3 cut(s)	653, 997, 1055
TseI	GCWGC	3 cut(s)	128, 131, 531
Tsp45I	GTSAC	3 cut(s)	653, 997, 1055
TspDTI	ATGAA	9 cut(s)	36, 135, 140, 311, 511, 591, 672, 1098, 1158
TspGWI	ACGGA	2 cut(s)	822, 995
TspRI	CASTG	5 cut(s)	467, 595, 655, 777, 1145
Van91I	CCANNNNNTGG	1 cut(s)	725
VpaK11BI	GGWCC	1 cut(s)	716
VspI	ATTAAT	1 cut(s)	498
XapI	RAATTY	3 cut(s)	142, 284, 546
XspI	CTAG	2 cut(s)	861, 1179
Zsp2I	ATGCAT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.