Rh1AG100800

Glycosyl hydrolases family 28

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0002703
Physical Location & Seq
Reverse (-)
17675635 .. 17678024
2390 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG100800.1

Sequence Viewer

Length: 1026 bp
ATGGAGGGTCGAATACTTGCTATGATCTTCTTGTTCATGATCATTCTGGTTGCTTCACCTTCACCAAGTTCATGTGCCAGACTTAATGGTTTTCCCACAACATATACTTTAAGAGACGATGGTGCCATTGGTTATTATGGTGATCAAGTTGCTGCTGCGACATCAAATTCATTCCATACTAAGGAGTATGGTGATGTTTTTGCAACCCCAAATACATTCGAAGAGTATTATCGTCCCCTTGCAAATCGCCAAACCGATGATGATTTACAAGCATCCCCAGATGCATGGAGATCACTTGCAAAAAGCGAATTCAATGTGATGAATTATGGCGCTGTTGGGAATGGCCAAGTTGATGATACACAAGCCTTTCTAAAAGCATGGGGAGATGTTTGTGGATCCACTCAAGGCATCCCTACACTTATTATACCAAAGGGCAACACTTTCTTGCTCAATTCTGTGGAGTTTAAAGGGCCTTGCAGGGCTGCAAGTGTAAATTTCCAGCTAAGTGGGAACATTGTTGCACCAAATAATATGAATGCTTGGAAAGACAAGGACCAATGGGTTCAGTTTGATGATGTCCAAGGTCTGATAATCAATGGAGGAGGTCAAATTGATGGTCAAGGTCAGGTTTGGTGGAAAGTTTGCGACACTACAAATTGCCAACGACCAACTGGCGGGTCAGGGTATGCTAGGAACATCAGTTTTGAGGATATCATAATTCAAGCAGCCAAGAACCCTATCATTATAGACCAGAAGTATACTGATAATCTCTCTACTGGAACTGGAACCCTGCTTGACCAAGAAAATGCTGTACAAGTGAGCGATGTGACATTCCGTAACATTCGGGGATCTGTTGCTGGGGATACAGCTATTACTTTGGACTGTGACGATCAAATTGGTTGCAAAAACATTGTAATGGATCACATAGACCTAACTTCATCTGTTCCTGGCAAGAAGGTTTCTGCCCACTGCGAGAACGTTAAAGGATTATCTACTTTATTATCTCCCAGTGTGTCATGTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

341

Amino Acids

36.92

Weight (kDa)

4.65

Isoelectric Point (pI)

25.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_28 PF00295 135 - 217 2.2e-13 Glycosyl hydrolases family 28
Glyco_hydro_28 PF00295 225 - 328 6.5e-20 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 122
AccI GTMKAC 1 cut(s) 758
AciI CCGC 1 cut(s) 675
AclI AACGTT 1 cut(s) 978
AclWI GGATC 4 cut(s) 390, 403, 856, 927
AcoI YGGCCR 1 cut(s) 343
AcsI RAATTY 3 cut(s) 166, 308, 493
AfaI GTAC 1 cut(s) 813
AfiI CCNNNNNNNGG 2 cut(s) 181, 674
AgsI TTSAA 2 cut(s) 313, 722
AjnI CCWGG 1 cut(s) 946
AluBI AGCT 2 cut(s) 502, 869
AluI AGCT 2 cut(s) 502, 869
Alw26I GTCTC 1 cut(s) 108
AlwI GGATC 4 cut(s) 390, 403, 856, 927
AoxI GGCC 2 cut(s) 343, 470
ApeKI GCWGC 4 cut(s) 152, 155, 482, 725
ApoI RAATTY 3 cut(s) 166, 308, 493
ArsI GACNNNNNNTTYG 2 cut(s) 601, 633
AspLEI GCGC 1 cut(s) 332
AspS9I GGNCC 2 cut(s) 470, 553
AsuHPI GGTGA 4 cut(s) 48, 54, 152, 203
AsuII TTCGAA 1 cut(s) 219
AvaII GGWCC 1 cut(s) 553
BalI TGGCCA 1 cut(s) 345
BamHI GGATCC 1 cut(s) 395
BanI GGYRCC 1 cut(s) 122
BbvI GCAGC 4 cut(s) 139, 142, 469, 737
BccI CCATC 2 cut(s) 113, 608
BciT130I CCWGG 1 cut(s) 948
BciVI GTATCC 1 cut(s) 856
BclI TGATCA 2 cut(s) 39, 142
BcoDI GTCTC 1 cut(s) 108
BfaI CTAG 1 cut(s) 690
BfoI RGCGCY 1 cut(s) 333
BfuI GTATCC 1 cut(s) 856
BisI GCNGC 4 cut(s) 153, 156, 483, 726
BlsI GCNGC 4 cut(s) 154, 157, 484, 727
Bme1390I CCNGG 1 cut(s) 948
Bme18I GGWCC 1 cut(s) 553
BmgT120I GGNCC 2 cut(s) 470, 553
BmiI GGNNCC 3 cut(s) 124, 397, 787
BmrFI CCNGG 1 cut(s) 948
BmrI ACTGGG 1 cut(s) 1002
BmsI GCATC 3 cut(s) 271, 281, 417
BmuI ACTGGG 1 cut(s) 1002
Bpu14I TTCGAA 1 cut(s) 219
BpuEI CTTGAG 1 cut(s) 387
BsaJI CCNNGG 1 cut(s) 580
Bsc4I CCNNNNNNNGG 2 cut(s) 181, 674
Bse1I ACTGG 4 cut(s) 676, 781, 787, 1008
BseBI CCWGG 1 cut(s) 948
BseDI CCNNGG 1 cut(s) 580
BseGI GGATG 2 cut(s) 272, 408
BseLI CCNNNNNNNGG 2 cut(s) 181, 674
BseNI ACTGG 4 cut(s) 676, 781, 787, 1008
BseRI GAGGAG 1 cut(s) 615
BseXI GCAGC 4 cut(s) 139, 142, 469, 737
BseYI CCCAGC 1 cut(s) 857
BshFI GGCC 2 cut(s) 345, 472
BshNI GGYRCC 1 cut(s) 122
BslFI GGGAC 1 cut(s) 219
BslI CCNNNNNNNGG 2 cut(s) 181, 674
BsmAI GTCTC 1 cut(s) 108
BsmBI CGTCTC 1 cut(s) 108
BsmFI GGGAC 1 cut(s) 219
BsmI GAATGC 1 cut(s) 541
BsnI GGCC 2 cut(s) 345, 472
Bsp119I TTCGAA 1 cut(s) 219
Bsp1407I TGTACA 1 cut(s) 811
Bsp143I GATC 8 cut(s) 24, 39, 142, 290, 395, 848, 889, 919
BspACI CCGC 1 cut(s) 675
BspANI GGCC 2 cut(s) 345, 472
BspHI TCATGA 1 cut(s) 36
BspLI GGNNCC 3 cut(s) 124, 397, 787
BspPI GGATC 4 cut(s) 390, 403, 856, 927
BspT104I TTCGAA 1 cut(s) 219
BspT107I GGYRCC 1 cut(s) 122
BsrGI TGTACA 1 cut(s) 811
BsrI ACTGG 4 cut(s) 676, 781, 787, 1008
BssECI CCNNGG 1 cut(s) 580
BssMI GATC 8 cut(s) 24, 39, 142, 290, 395, 848, 889, 919
BssNAI GTATAC 1 cut(s) 759
BssT1I CCWWGG 1 cut(s) 580
Bst1107I GTATAC 1 cut(s) 759
Bst2UI CCWGG 1 cut(s) 948
Bst4CI ACNGT 1 cut(s) 884
Bst6I CTCTTC 1 cut(s) 216
BstAUI TGTACA 1 cut(s) 811
BstBI TTCGAA 1 cut(s) 219
BstDEI CTNAG 2 cut(s) 180, 503
BstF5I GGATG 2 cut(s) 272, 408
BstH2I RGCGCY 1 cut(s) 333
BstHHI GCGC 1 cut(s) 332
BstKTI GATC 8 cut(s) 27, 42, 145, 293, 398, 851, 892, 922
BstMAI GTCTC 1 cut(s) 108
BstMBI GATC 8 cut(s) 24, 39, 142, 290, 395, 848, 889, 919
BstNI CCWGG 1 cut(s) 948
BstSCI CCNGG 1 cut(s) 946
BstV1I GCAGC 4 cut(s) 139, 142, 469, 737
BstX2I RGATCY 2 cut(s) 395, 848
BstXI CCANNNNNNTGG 2 cut(s) 285, 506
BstYI RGATCY 2 cut(s) 395, 848
BstZ17I GTATAC 1 cut(s) 759
BsuI GTATCC 1 cut(s) 856
BsuRI GGCC 2 cut(s) 345, 472
BtgZI GCGATG 1 cut(s) 837
BtsCI GGATG 2 cut(s) 272, 408
BtsI GCAGTG 1 cut(s) 967
BtsIMutI CAGTG 2 cut(s) 967, 1015
CciI TCATGA 1 cut(s) 36
CfoI GCGC 1 cut(s) 332
Cfr13I GGNCC 2 cut(s) 470, 553
Csp6I GTAC 1 cut(s) 812
CviAII CATG 5 cut(s) 37, 72, 285, 378, 1017
CviJI RGCY 7 cut(s) 345, 365, 472, 482, 502, 728, 869
CviKI_1 RGCY 7 cut(s) 345, 365, 472, 482, 502, 728, 869
CviQI GTAC 1 cut(s) 812
DdeI CTNAG 2 cut(s) 180, 503
DpnI GATC 8 cut(s) 26, 41, 144, 292, 397, 850, 891, 921
DpnII GATC 8 cut(s) 24, 39, 142, 290, 395, 848, 889, 919
DraI TTTAAA 1 cut(s) 466
EaeI YGGCCR 1 cut(s) 343
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Eco130I CCWWGG 1 cut(s) 580
Eco32I GATATC 1 cut(s) 712
Eco47I GGWCC 1 cut(s) 553
EcoO109I RGGNCCY 1 cut(s) 470
EcoRI GAATTC 1 cut(s) 308
EcoRII CCWGG 1 cut(s) 946
EcoRV GATATC 1 cut(s) 712
EcoT14I CCWWGG 1 cut(s) 580
EcoT22I ATGCAT 1 cut(s) 286
ErhI CCWWGG 1 cut(s) 580
Esp3I CGTCTC 1 cut(s) 108
FaeI CATG 5 cut(s) 40, 75, 288, 381, 1020
FaqI GGGAC 1 cut(s) 219
FatI CATG 5 cut(s) 36, 71, 284, 377, 1016
FauI CCCGC 1 cut(s) 668
FbaI TGATCA 2 cut(s) 39, 142
FblI GTMKAC 1 cut(s) 758
Fnu4HI GCNGC 4 cut(s) 153, 156, 483, 726
FokI GGATG 2 cut(s) 259, 395
Fsp4HI GCNGC 4 cut(s) 153, 156, 483, 726
FspBI CTAG 1 cut(s) 690
GlaI GCGC 1 cut(s) 331
GluI GCNGC 4 cut(s) 153, 156, 483, 726
GsaI CCCAGC 1 cut(s) 861
HaeII RGCGCY 1 cut(s) 333
HaeIII GGCC 2 cut(s) 345, 472
HhaI GCGC 1 cut(s) 332
Hin1II CATG 5 cut(s) 40, 75, 288, 381, 1020
Hin6I GCGC 1 cut(s) 330
HinP1I GCGC 1 cut(s) 330
HphI GGTGA 4 cut(s) 48, 54, 152, 203
Hpy166II GTNNAC 1 cut(s) 759
Hpy188I TCNGA 1 cut(s) 588
Hpy188III TCNNGA 1 cut(s) 37
Hpy8I GTNNAC 1 cut(s) 759
HpyAV CCTTC 2 cut(s) 69, 949
HpyCH4III ACNGT 1 cut(s) 884
HpyCH4IV ACGT 1 cut(s) 978
HpyCH4V TGCA 8 cut(s) 203, 242, 284, 299, 477, 485, 521, 903
HpyF3I CTNAG 2 cut(s) 180, 503
HpySE526I ACGT 1 cut(s) 978
Hsp92II CATG 5 cut(s) 40, 75, 288, 381, 1020
HspAI GCGC 1 cut(s) 330
Ksp22I TGATCA 2 cut(s) 39, 142
Kzo9I GATC 8 cut(s) 24, 39, 142, 290, 395, 848, 889, 919
Lsp1109I GCAGC 4 cut(s) 139, 142, 469, 737
LweI GCATC 3 cut(s) 271, 281, 417
MaeI CTAG 1 cut(s) 690
MaeII ACGT 1 cut(s) 978
MaeIII GTNAC 3 cut(s) 826, 836, 884
MalI GATC 8 cut(s) 26, 41, 144, 292, 397, 850, 891, 921
MboI GATC 8 cut(s) 24, 39, 142, 290, 395, 848, 889, 919
MboII GAAGA 2 cut(s) 19, 233
MflI RGATCY 2 cut(s) 395, 848
MlsI TGGCCA 1 cut(s) 345
MluCI AATT 9 cut(s) 166, 308, 322, 451, 493, 609, 655, 717, 894
MluNI TGGCCA 1 cut(s) 345
MnlI CCTC 3 cut(s) 593, 596, 700
Mox20I TGGCCA 1 cut(s) 345
Mph1103I ATGCAT 1 cut(s) 286
MscI TGGCCA 1 cut(s) 345
MseI TTAA 5 cut(s) 84, 110, 465, 981, 1024
MslI CAYNNNNRTG 1 cut(s) 914
Msp20I TGGCCA 1 cut(s) 345
MspR9I CCNGG 1 cut(s) 948
Mva1269I GAATGC 1 cut(s) 541
MvaI CCWGG 1 cut(s) 948
NdeII GATC 8 cut(s) 24, 39, 142, 290, 395, 848, 889, 919
NlaIII CATG 5 cut(s) 40, 75, 288, 381, 1020
NlaIV GGNNCC 3 cut(s) 124, 397, 787
NmuCI GTSAC 2 cut(s) 826, 884
NsiI ATGCAT 1 cut(s) 286
NspV TTCGAA 1 cut(s) 219
PagI TCATGA 1 cut(s) 36
PctI GAATGC 1 cut(s) 541
PkrI GCNGC 4 cut(s) 154, 157, 484, 727
Psp1406I AACGTT 1 cut(s) 978
Psp6I CCWGG 1 cut(s) 946
PspFI CCCAGC 1 cut(s) 857
PspGI CCWGG 1 cut(s) 946
PspN4I GGNNCC 3 cut(s) 124, 397, 787
PspPI GGNCC 2 cut(s) 470, 553
PsuI RGATCY 2 cut(s) 395, 848
RsaI GTAC 1 cut(s) 813
RsaNI GTAC 1 cut(s) 812
RseI CAYNNNNRTG 1 cut(s) 914
SaqAI TTAA 5 cut(s) 84, 110, 465, 981, 1024
SatI GCNGC 4 cut(s) 153, 156, 483, 726
Sau3AI GATC 8 cut(s) 24, 39, 142, 290, 395, 848, 889, 919
Sau96I GGNCC 2 cut(s) 470, 553
ScrFI CCNGG 1 cut(s) 948
SfaNI GCATC 3 cut(s) 271, 281, 417
SfuI TTCGAA 1 cut(s) 219
SinI GGWCC 1 cut(s) 553
SmiMI CAYNNNNRTG 1 cut(s) 914
SmlI CTYRAG 1 cut(s) 402
SmoI CTYRAG 1 cut(s) 402
Sse9I AATT 9 cut(s) 166, 308, 322, 451, 493, 609, 655, 717, 894
SsiI CCGC 1 cut(s) 675
SspMI CTAG 1 cut(s) 690
StyD4I CCNGG 1 cut(s) 946
StyI CCWWGG 1 cut(s) 580
TaaI ACNGT 1 cut(s) 884
TaiI ACGT 1 cut(s) 981
TaqI TCGA 2 cut(s) 10, 219
TasI AATT 9 cut(s) 166, 308, 322, 451, 493, 609, 655, 717, 894
TatI WGTACW 1 cut(s) 811
Tru1I TTAA 5 cut(s) 84, 110, 465, 981, 1024
Tru9I TTAA 5 cut(s) 84, 110, 465, 981, 1024
TscAI CASTG 2 cut(s) 974, 1015
TseFI GTSAC 2 cut(s) 826, 884
TseI GCWGC 4 cut(s) 152, 155, 482, 725
Tsp45I GTSAC 2 cut(s) 826, 884
TspDTI ATGAA 6 cut(s) 25, 60, 159, 335, 548, 927
TspGWI ACGGA 1 cut(s) 824
TspRI CASTG 2 cut(s) 974, 1015
VpaK11BI GGWCC 1 cut(s) 553
XapI RAATTY 3 cut(s) 166, 308, 493
XcmI CCANNNNNNNNNTGG 1 cut(s) 668
XmiI GTMKAC 1 cut(s) 758
XspI CTAG 1 cut(s) 690
Zsp2I ATGCAT 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.