RchiOBHm_Chr1g0329741

Glycosyl hydrolases family 28

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002703
Physical Location & Seq
Reverse (-)
19477732 .. 19480097
2366 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55901

Sequence Viewer

Length: 1428 bp
ATGGAGGGTCGAATACTTGCTACGATGTTTTTGTTCATGATCATTATGGTTGCTTCACCTTCACCAAGTTCATGTGCCAGACTTAATGGTTTTCCCACAACATATACTTTAAGAGATGATGGTGCCATTGGTTATTATGGTGATCAAGTTGCTGCTGCGACATCAAATTCATTTCATGATAAGGAGTATGGTGATGTTTTTGCAACCCCAAATACATTCAAAGAGTATTATCGTCCTCTTGCAAATCGCCAAACCGATGATGATTTACAAGCATTCCCAGATGCATGGAGATCACTTGCAAAAAGCGAATTCAATGTGATGAATTATGGCGCTGTTGGGAATGGCCAAGTTGATGATACACAAGCCTTTCTAAAAGCATGGGGAGATGTTTGTGGATCCACTCAAGGCCTCCCTGCACTTATTATACCAAAGGGCAACACTTTCTTGCTCAATTCTGTGGAGTTTAAAGGACCTTGCAAGGCTGCAAGTGTAAATTTCCAGCTAAGTGGGAACATTGTTGCACCAAATAATATAAATGCTTGGAAAGACAAGGAGAAATGGATTCAGTTTTATGATGTTGAAGGGCTGATAATCAATGGAGGAGGTCAAATTGATGGTCAAGGTGAGGTTTGGTGGAAAGTTTGCGACAATTCAAATTGCCAACGACCAACATCTGTTCTCCATATTTACCAGTGTGATGGTCTCCGCTTGAGTGATATTACACATATTAATAGTCCGAGAAACCATATATTCATCATGGGCAGCAATGGCGTTCAAATTTCAGATATCCTTATTAGGGCTCCTGATGAAAGTCCAAACACTGATGGAATTAAAATCTCTAGATCAACCAACATTAACATTCACAATTCTTTTATAGGCACTGGTGACGACTGTATTGCAATCATTTCTGGTTCATCTCATATCAACATTACTAATGTTATGTGTGGTCCAGGCCATGGTATAAGTGTTGGAAGTCTTGGTAAGGAAGGTGCTTATAACACAGTGGAAGATGTGCAAGTGAGAAACTGCACCCTGAAGGGAACAGATAATGGAGCAAGAATCAAGACATGGCAAGGCGGGTCAGGGTATGCTAGGAACATCAGTTTTGAGGATATCATAATTCAAGAAGTCAAGAACCCCATCATTATAGACCAGAAGTATATTGATAAGAGCATTGCTGGAACTGGAACCTTGCTTGGCCAAGGAAGTGCTGTAAAAGTGAGCGATGTGACATTCCGTAACATTCGAGGATCTGTTGCTGGGGAAACAGCCATTACTTTGGACTGTGACGATCAAATTGGTTGCAAAAACATTGTAATGGATAACATAGACTTGACTTCATCTGTTCCTGGCAAGAAGGTTTCTGCCCAGTGCAAGAACGTTCAAGGATTTTCTACTTCATTATCTCCTAGTGTGCCATGCCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

475

Amino Acids

51.28

Weight (kDa)

5.33

Isoelectric Point (pI)

32.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_28 PF00295 136 - 462 1.9e-93 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 996
AccB1I GGYRCC 1 cut(s) 122
AccB7I CCANNNNNTGG 1 cut(s) 956
AciI CCGC 2 cut(s) 706, 1077
AclI AACGTT 1 cut(s) 1380
AclWI GGATC 3 cut(s) 390, 403, 1258
AcoI YGGCCR 2 cut(s) 343, 1198
AcsI RAATTY 4 cut(s) 166, 308, 493, 777
AcuI CTGAAG 1 cut(s) 1055
AfiI CCNNNNNNNGG 2 cut(s) 796, 956
AgsI TTSAA 7 cut(s) 220, 313, 581, 654, 776, 1124, 1385
AjnI CCWGG 2 cut(s) 949, 1348
AluBI AGCT 1 cut(s) 502
AluI AGCT 1 cut(s) 502
Alw26I GTCTC 1 cut(s) 707
AlwI GGATC 3 cut(s) 390, 403, 1258
AoxI GGCC 4 cut(s) 343, 406, 952, 1198
ApeKI GCWGC 4 cut(s) 152, 155, 482, 762
ApoI RAATTY 4 cut(s) 166, 308, 493, 777
ArsI GACNNNNNNTTYG 2 cut(s) 601, 633
AseI ATTAAT 1 cut(s) 729
AspLEI GCGC 1 cut(s) 332
AspS9I GGNCC 2 cut(s) 470, 947
AsuHPI GGTGA 6 cut(s) 48, 54, 152, 203, 635, 896
AvaII GGWCC 2 cut(s) 470, 947
BalI TGGCCA 2 cut(s) 345, 1200
BamHI GGATCC 1 cut(s) 395
BanI GGYRCC 1 cut(s) 122
BanII GRGCYC 1 cut(s) 802
BbvI GCAGC 4 cut(s) 139, 142, 469, 774
BccI CCATC 5 cut(s) 113, 608, 692, 818, 1148
BcgI CGANNNNNNTGC 2 cut(s) 878, 912
BciT130I CCWGG 2 cut(s) 951, 1350
BclI TGATCA 2 cut(s) 39, 142
BcoDI GTCTC 1 cut(s) 707
BfaI CTAG 3 cut(s) 840, 1092, 1410
BfoI RGCGCY 1 cut(s) 333
BisI GCNGC 4 cut(s) 153, 156, 483, 763
BlsI GCNGC 4 cut(s) 154, 157, 484, 764
Bme1390I CCNGG 2 cut(s) 951, 1350
Bme18I GGWCC 2 cut(s) 470, 947
BmgT120I GGNCC 2 cut(s) 470, 947
BmiI GGNNCC 4 cut(s) 124, 397, 801, 1189
BmrFI CCNGG 2 cut(s) 951, 1350
BmrI ACTGGG 1 cut(s) 1363
BmsI GCATC 1 cut(s) 271
BmuI ACTGGG 1 cut(s) 1363
BpuEI CTTGAG 2 cut(s) 387, 730
BsaI GGTCTC 1 cut(s) 707
BsaJI CCNNGG 2 cut(s) 955, 1201
Bsc4I CCNNNNNNNGG 2 cut(s) 796, 956
Bse1I ACTGG 4 cut(s) 691, 886, 1189, 1369
Bse3DI GCAATG 2 cut(s) 772, 1173
BseBI CCWGG 2 cut(s) 951, 1350
BseDI CCNNGG 2 cut(s) 955, 1201
BseLI CCNNNNNNNGG 2 cut(s) 796, 956
BseMI GCAATG 2 cut(s) 772, 1173
BseNI ACTGG 4 cut(s) 691, 886, 1189, 1369
BseRI GAGGAG 1 cut(s) 615
BseXI GCAGC 4 cut(s) 139, 142, 469, 774
BseYI CCCAGC 1 cut(s) 1259
BsgI GTGCAG 2 cut(s) 399, 1012
BshFI GGCC 4 cut(s) 345, 408, 954, 1200
BshNI GGYRCC 1 cut(s) 122
BslI CCNNNNNNNGG 2 cut(s) 796, 956
BsmAI GTCTC 1 cut(s) 707
BsmI GAATGC 1 cut(s) 272
BsnI GGCC 4 cut(s) 345, 408, 954, 1200
Bso31I GGTCTC 1 cut(s) 707
Bsp1286I GDGCHC 1 cut(s) 802
Bsp143I GATC 7 cut(s) 39, 142, 290, 395, 842, 1250, 1291
Bsp19I CCATGG 1 cut(s) 955
BspACI CCGC 2 cut(s) 706, 1077
BspANI GGCC 4 cut(s) 345, 408, 954, 1200
BspHI TCATGA 2 cut(s) 36, 175
BspLI GGNNCC 4 cut(s) 124, 397, 801, 1189
BspPI GGATC 3 cut(s) 390, 403, 1258
BspT107I GGYRCC 1 cut(s) 122
BspTNI GGTCTC 1 cut(s) 707
BsrDI GCAATG 2 cut(s) 772, 1173
BsrI ACTGG 4 cut(s) 691, 886, 1189, 1369
BssECI CCNNGG 2 cut(s) 955, 1201
BssMI GATC 7 cut(s) 39, 142, 290, 395, 842, 1250, 1291
BssT1I CCWWGG 2 cut(s) 955, 1201
Bst2UI CCWGG 2 cut(s) 951, 1350
Bst4CI ACNGT 3 cut(s) 893, 1003, 1286
BstDEI CTNAG 1 cut(s) 503
BstDSI CCRYGG 1 cut(s) 955
BstH2I RGCGCY 1 cut(s) 333
BstHHI GCGC 1 cut(s) 332
BstKTI GATC 7 cut(s) 42, 145, 293, 398, 845, 1253, 1294
BstMAI GTCTC 1 cut(s) 707
BstMBI GATC 7 cut(s) 39, 142, 290, 395, 842, 1250, 1291
BstMWI GCNNNNNNNGC 1 cut(s) 768
BstNI CCWGG 2 cut(s) 951, 1350
BstSCI CCNGG 2 cut(s) 949, 1348
BstV1I GCAGC 4 cut(s) 139, 142, 469, 774
BstX2I RGATCY 2 cut(s) 395, 1250
BstXI CCANNNNNNTGG 4 cut(s) 285, 506, 698, 1279
BstYI RGATCY 2 cut(s) 395, 1250
BsuRI GGCC 4 cut(s) 345, 408, 954, 1200
BtgI CCRYGG 1 cut(s) 955
BtgZI GCGATG 1 cut(s) 1239
BtsIMutI CAGTG 5 cut(s) 698, 819, 879, 1008, 1376
CciI TCATGA 2 cut(s) 36, 175
CfoI GCGC 1 cut(s) 332
Cfr13I GGNCC 2 cut(s) 470, 947
CviAII CATG 9 cut(s) 37, 72, 176, 285, 378, 757, 956, 1068, 1419
DdeI CTNAG 1 cut(s) 503
DpnI GATC 7 cut(s) 41, 144, 292, 397, 844, 1252, 1293
DpnII GATC 7 cut(s) 39, 142, 290, 395, 842, 1250, 1291
DraI TTTAAA 1 cut(s) 466
EaeI YGGCCR 2 cut(s) 343, 1198
Eco130I CCWWGG 2 cut(s) 955, 1201
Eco147I AGGCCT 1 cut(s) 408
Eco24I GRGCYC 1 cut(s) 802
Eco31I GGTCTC 1 cut(s) 707
Eco32I GATATC 2 cut(s) 787, 1114
Eco47I GGWCC 2 cut(s) 470, 947
Eco57I CTGAAG 1 cut(s) 1055
EcoO109I RGGNCCY 1 cut(s) 470
EcoRI GAATTC 1 cut(s) 308
EcoRII CCWGG 2 cut(s) 949, 1348
EcoRV GATATC 2 cut(s) 787, 1114
EcoT14I CCWWGG 2 cut(s) 955, 1201
EcoT22I ATGCAT 1 cut(s) 286
EcoT38I GRGCYC 1 cut(s) 802
ErhI CCWWGG 2 cut(s) 955, 1201
FaeI CATG 9 cut(s) 40, 75, 179, 288, 381, 760, 959, 1071, 1422
FatI CATG 9 cut(s) 36, 71, 175, 284, 377, 756, 955, 1067, 1418
FauI CCCGC 1 cut(s) 1070
FbaI TGATCA 2 cut(s) 39, 142
Fnu4HI GCNGC 4 cut(s) 153, 156, 483, 763
FriOI GRGCYC 1 cut(s) 802
Fsp4HI GCNGC 4 cut(s) 153, 156, 483, 763
FspBI CTAG 3 cut(s) 840, 1092, 1410
GlaI GCGC 1 cut(s) 331
GluI GCNGC 4 cut(s) 153, 156, 483, 763
GsaI CCCAGC 1 cut(s) 1263
HaeII RGCGCY 1 cut(s) 333
HaeIII GGCC 4 cut(s) 345, 408, 954, 1200
HhaI GCGC 1 cut(s) 332
Hin1II CATG 9 cut(s) 40, 75, 179, 288, 381, 760, 959, 1071, 1422
Hin6I GCGC 1 cut(s) 330
HinP1I GCGC 1 cut(s) 330
HinfI GANTC 2 cut(s) 562, 1059
HphI GGTGA 6 cut(s) 48, 54, 152, 203, 635, 896
Hpy188I TCNGA 2 cut(s) 738, 784
Hpy188III TCNNGA 7 cut(s) 37, 176, 803, 840, 1063, 1124, 1132
HpyAV CCTTC 5 cut(s) 69, 575, 980, 1030, 1351
HpyCH4III ACNGT 3 cut(s) 893, 1003, 1286
HpyCH4IV ACGT 1 cut(s) 1380
HpyF10VI GCNNNNNNNGC 1 cut(s) 768
HpyF3I CTNAG 1 cut(s) 503
HpySE526I ACGT 1 cut(s) 1380
Hsp92II CATG 9 cut(s) 40, 75, 179, 288, 381, 760, 959, 1071, 1422
HspAI GCGC 1 cut(s) 330
Ksp22I TGATCA 2 cut(s) 39, 142
Kzo9I GATC 7 cut(s) 39, 142, 290, 395, 842, 1250, 1291
LmnI GCTCC 2 cut(s) 805, 1052
Lsp1109I GCAGC 4 cut(s) 139, 142, 469, 774
LweI GCATC 1 cut(s) 271
MaeI CTAG 3 cut(s) 840, 1092, 1410
MaeII ACGT 1 cut(s) 1380
MaeIII GTNAC 4 cut(s) 884, 1228, 1238, 1286
MalI GATC 7 cut(s) 41, 144, 292, 397, 844, 1252, 1293
MboI GATC 7 cut(s) 39, 142, 290, 395, 842, 1250, 1291
MboII GAAGA 1 cut(s) 1019
MflI RGATCY 2 cut(s) 395, 1250
MhlI GDGCHC 1 cut(s) 802
MlsI TGGCCA 2 cut(s) 345, 1200
MluNI TGGCCA 2 cut(s) 345, 1200
MmeI TCCRAC 1 cut(s) 949
MnlI CCTC 7 cut(s) 246, 419, 593, 596, 619, 1102, 1241
Mox20I TGGCCA 2 cut(s) 345, 1200
Mph1103I ATGCAT 1 cut(s) 286
MscI TGGCCA 2 cut(s) 345, 1200
MseI TTAA 7 cut(s) 84, 110, 465, 729, 831, 855, 1426
MslI CAYNNNNRTG 1 cut(s) 1316
Msp20I TGGCCA 2 cut(s) 345, 1200
MspR9I CCNGG 2 cut(s) 951, 1350
Mva1269I GAATGC 1 cut(s) 272
MvaI CCWGG 2 cut(s) 951, 1350
MwoI GCNNNNNNNGC 1 cut(s) 768
NcoI CCATGG 1 cut(s) 955
NdeII GATC 7 cut(s) 39, 142, 290, 395, 842, 1250, 1291
NlaIII CATG 9 cut(s) 40, 75, 179, 288, 381, 760, 959, 1071, 1422
NlaIV GGNNCC 4 cut(s) 124, 397, 801, 1189
NmuCI GTSAC 3 cut(s) 884, 1228, 1286
NsiI ATGCAT 1 cut(s) 286
PagI TCATGA 2 cut(s) 36, 175
PceI AGGCCT 1 cut(s) 408
PctI GAATGC 1 cut(s) 272
PfeI GAWTC 2 cut(s) 562, 1059
PflMI CCANNNNNTGG 1 cut(s) 956
PkrI GCNGC 4 cut(s) 154, 157, 484, 764
PpuMI RGGWCCY 1 cut(s) 470
PshBI ATTAAT 1 cut(s) 729
PsiI TTATAA 1 cut(s) 996
Psp1406I AACGTT 1 cut(s) 1380
Psp5II RGGWCCY 1 cut(s) 470
Psp6I CCWGG 2 cut(s) 949, 1348
PspFI CCCAGC 1 cut(s) 1259
PspGI CCWGG 2 cut(s) 949, 1348
PspN4I GGNNCC 4 cut(s) 124, 397, 801, 1189
PspPI GGNCC 2 cut(s) 470, 947
PspPPI RGGWCCY 1 cut(s) 470
PsuI RGATCY 2 cut(s) 395, 1250
RseI CAYNNNNRTG 1 cut(s) 1316
SaqAI TTAA 7 cut(s) 84, 110, 465, 729, 831, 855, 1426
SatI GCNGC 4 cut(s) 153, 156, 483, 763
Sau3AI GATC 7 cut(s) 39, 142, 290, 395, 842, 1250, 1291
Sau96I GGNCC 2 cut(s) 470, 947
ScrFI CCNGG 2 cut(s) 951, 1350
SduI GDGCHC 1 cut(s) 802
SfaNI GCATC 1 cut(s) 271
SinI GGWCC 2 cut(s) 470, 947
SmiMI CAYNNNNRTG 1 cut(s) 1316
SmlI CTYRAG 2 cut(s) 402, 709
SmoI CTYRAG 2 cut(s) 402, 709
SseBI AGGCCT 1 cut(s) 408
SsiI CCGC 2 cut(s) 706, 1077
SspMI CTAG 3 cut(s) 840, 1092, 1410
StuI AGGCCT 1 cut(s) 408
StyD4I CCNGG 2 cut(s) 949, 1348
StyI CCWWGG 2 cut(s) 955, 1201
TaaI ACNGT 3 cut(s) 893, 1003, 1286
TaiI ACGT 1 cut(s) 1383
TaqI TCGA 2 cut(s) 10, 1246
TfiI GAWTC 2 cut(s) 562, 1059
Tru1I TTAA 7 cut(s) 84, 110, 465, 729, 831, 855, 1426
Tru9I TTAA 7 cut(s) 84, 110, 465, 729, 831, 855, 1426
TscAI CASTG 5 cut(s) 698, 826, 886, 1008, 1376
TseFI GTSAC 3 cut(s) 884, 1228, 1286
TseI GCWGC 4 cut(s) 152, 155, 482, 762
Tsp45I GTSAC 3 cut(s) 884, 1228, 1286
TspGWI ACGGA 1 cut(s) 1226
TspRI CASTG 5 cut(s) 698, 826, 886, 1008, 1376
Van91I CCANNNNNTGG 1 cut(s) 956
VpaK11BI GGWCC 2 cut(s) 470, 947
VspI ATTAAT 1 cut(s) 729
XapI RAATTY 4 cut(s) 166, 308, 493, 777
XbaI TCTAGA 1 cut(s) 839
XspI CTAG 3 cut(s) 840, 1092, 1410
Zsp2I ATGCAT 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.