Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0002703

Physical Location & Seq

Genomic Coordinates Forward (+)

7378287 .. 7380612

Gene Structure 2326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G040000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGAAGATCCCGCTTACCGCCACCATTTTGGTCCTAATTATTTGGCTAATTGCTTCACCTAATCGTTCATGTAGTGCAAGAATAGTCGCGCCAGATGATTTCGATTTGTTTGATTATGGTGCTGTTCATCACAACACCCAAACTGATGATGAGGGTTTTTCTAAAGCCTTCTTGGAAGCGTGGGAAGCAAAAACAAATACTTTCAATGTGGTAGATTATGGTGCTGTTGGGAATGGCCTAGTAGATGATACAAAAGCCTTCCTCAAGGCATGGGGAGCTATGTGTGCATCATCAACTCAAGGCACCCTTACCCTGGTGGTACCAAAGGGCAAAAGATTCTTGTTAAATGCTGTGGCGTTTGAAGGGCCTTGCAGGGCTAGTAAAGTAAATTTCCAGATACAAGGGAGTATTGTTGCACCGAATAACATTGGTGCATGGACAAACAAGGAGATGTGGATTCAGTTTTCGAAGGTACAAGGTCTATCGGTCAATGGAGGAGGTCGAATTGATGGAAATGGCGCCGTTTGGTGGAAAGCTTGCGGTGGGGAAGGCTGCCAGAGACCAACTGCTCTCCATTTCAACAAATGTCATGGCTTCCAATTGAGTCGTCTGGCAATTTTCAATAGCCCTAAAAACCATATAAGCATTTGTAGCTGCAATGGCCCCCGAGTTTTCGGTCTCTTTATTTGGGCTCCTAAAGACAGTCCAAACACAGATGGAATTGATATTTCCCAATCAACCCGAGTCACAATTCAATCTTCTCATATAGCAACTGGTGATGATTGTATTGCCATCAATAGCGGTTCATCTTATATCAAGATTAGGGATATTAAATGCGGACCAGGCCATGGTATTAGTATTGGCAGTCTAGGTCAACATGGAGAATACAGTCAAGTGGAAGAGGTGCAAGTGAGCAATTGCACCTTCAAGGGGACAACAAATGGAGTGAGAATCAAGACATGGGAAGGCGGTTCGGGATATGCTAGGAAGATCACTTTCGAGGGGATCACATTTGAAGACACCAAAAATCCTATCATAATAGACCAGCACTATTTTGCTAAACCTACTTCAGCAATGGACATAAGCAAGTCGGTACAAGTTAGCGACGTGACGTACCGAAATATAAACGGAACTTGCGCTGATGAGAAAGCCATATCTTTGGCCTGCGCAGGGGGCGGATGCACAAACATTGTGATGGACAACGTGACCATAAAATCGGATCTTCCAAACAAGAGGTCTTATGCTTACTGCGACAATGCCCATGGCACCTCTTCCTTCTCTGTGCCTTCTGTCCCATGCCTTTCGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

437

Amino Acids

46.94

Weight (kDa)

7.84

Isoelectric Point (pI)

28.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17200
fragaria_vesca	FvH4_1g02040 FvH4_7g04480
malus_domestica	MD11G1182600.v1.1
prunus_persica	Prupe.6G155200_v2.0.a1 Prupe.7G040000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0329731 RchiOBHm_Chr1g0329741
rosa_laevigata	RLG00000007091 RLG00000029867 RLG00000029868 RLG00000030024
rosa_multiflora	Rmu_sc0004219.1_g000003 Rmu_sc0017438.1_g000003 Rmu_sc0018130.1_g000001 Rmu_sc0033936.1_g000002 Rmu_sc0033936.1_g000003
rosa_roxburghii	Rroxscaffold_2G00148230 Rroxscaffold_4G00320740 Rroxscaffold_4G00320750 Rroxscaffold_5G00370820
rosa_rugosa	Rorug01G0082300 Rorug01G0082400.1 Rorug01G0082500 Rorug04G0233600
rosa_samantha	Rh1AG100800 Rh1AG101000 Rh1AG101100 Rh1BG079900 Rh1BG080100 Rh1CG096200 Rh1CG096300 Rh1DG103900 Rh4AG289500 Rh4BG295500 Rh4CG311000 Rh4DG292400
rosa_wichuraiana	Rw1G007960 Rw1G007970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1168
Acc65I	GGTACC	1 cut(s)	319
AccB1I	GGYRCC	4 cut(s)	302, 319, 518, 1265
AccB7I	CCANNNNNTGG	1 cut(s)	848
AccII	CGCG	1 cut(s)	89
AciI	CCGC	7 cut(s)	11, 18, 540, 801, 837, 969, 1176
AclWI	GGATC	2 cut(s)	1013, 1227
AcsI	RAATTY	1 cut(s)	388
AcuI	CTGAAG	1 cut(s)	1053
AcyI	GRCGYC	1 cut(s)	519
AfaI	GTAC	4 cut(s)	321, 474, 1095, 1115
AfiI	CCNNNNNNNGG	5 cut(s)	313, 528, 848, 930, 1170
AgsI	TTSAA	7 cut(s)	205, 362, 580, 622, 755, 928, 1016
AjiI	CACGTC	1 cut(s)	1108
AjnI	CCWGG	2 cut(s)	312, 841
AluBI	AGCT	3 cut(s)	278, 536, 654
AluI	AGCT	3 cut(s)	278, 536, 654
Alw26I	GTCTC	2 cut(s)	553, 683
AlwI	GGATC	2 cut(s)	1013, 1227
Ama87I	CYCGRG	2 cut(s)	666, 741
AoxI	GGCC	5 cut(s)	235, 365, 661, 844, 1161
ApeKI	GCWGC	2 cut(s)	552, 654
ApoI	RAATTY	1 cut(s)	388
ArsI	GACNNNNNNTTYG	2 cut(s)	1220, 1252
Asp718I	GGTACC	1 cut(s)	319
AspLEI	GCGC	4 cut(s)	91, 521, 1139, 1169
AspS9I	GGNCC	4 cut(s)	31, 365, 662, 839
AsuHPI	GGTGA	2 cut(s)	48, 788
AsuII	TTCGAA	1 cut(s)	467
AvaI	CYCGRG	2 cut(s)	666, 741
AvaII	GGWCC	2 cut(s)	31, 839
BanI	GGYRCC	4 cut(s)	302, 319, 518, 1265
BanII	GRGCYC	1 cut(s)	694
BbsI	GAAGAC	1 cut(s)	1023
BbvI	GCAGC	2 cut(s)	539, 641
BccI	CCATC	4 cut(s)	503, 710, 800, 1189
BceAI	ACGGC	1 cut(s)	506
BciT130I	CCWGG	2 cut(s)	314, 843
BcoDI	GTCTC	2 cut(s)	553, 683
BfaI	CTAG	4 cut(s)	239, 378, 869, 984
BfoI	RGCGCY	1 cut(s)	522
BisI	GCNGC	2 cut(s)	553, 655
BlsI	GCNGC	2 cut(s)	554, 656
Bme1390I	CCNGG	2 cut(s)	314, 843
Bme18I	GGWCC	2 cut(s)	31, 839
BmeT110I	CYCGRG	2 cut(s)	666, 741
BmgBI	CACGTC	1 cut(s)	1108
BmgT120I	GGNCC	4 cut(s)	31, 365, 662, 839
BmiI	GGNNCC	6 cut(s)	304, 321, 520, 664, 693, 1267
BmrFI	CCNGG	2 cut(s)	314, 843
BmsI	GCATC	2 cut(s)	296, 1169
BpiI	GAAGAC	1 cut(s)	1023
Bpu14I	TTCGAA	1 cut(s)	467
BpuEI	CTTGAG	2 cut(s)	248, 282
BsaHI	GRCGYC	1 cut(s)	519
BsaI	GGTCTC	2 cut(s)	553, 683
BsaJI	CCNNGG	3 cut(s)	312, 847, 1261
Bsc4I	CCNNNNNNNGG	5 cut(s)	313, 528, 848, 930, 1170
Bse1I	ACTGG	1 cut(s)	778
Bse3DI	GCAATG	2 cut(s)	664, 1080
BseBI	CCWGG	2 cut(s)	314, 843
BseDI	CCNNGG	3 cut(s)	312, 847, 1261
BseGI	GGATG	1 cut(s)	1184
BseLI	CCNNNNNNNGG	5 cut(s)	313, 528, 848, 930, 1170
BseMI	GCAATG	2 cut(s)	664, 1080
BseNI	ACTGG	1 cut(s)	778
BseRI	GAGGAG	1 cut(s)	510
BseXI	GCAGC	2 cut(s)	539, 641
Bsh1236I	CGCG	1 cut(s)	89
BshFI	GGCC	5 cut(s)	237, 367, 663, 846, 1163
BshNI	GGYRCC	4 cut(s)	302, 319, 518, 1265
BsiHKCI	CYCGRG	2 cut(s)	666, 741
BslFI	GGGAC	2 cut(s)	946, 1277
BslI	CCNNNNNNNGG	5 cut(s)	313, 528, 848, 930, 1170
BsmAI	GTCTC	2 cut(s)	553, 683
BsmFI	GGGAC	2 cut(s)	946, 1277
BsnI	GGCC	5 cut(s)	237, 367, 663, 846, 1163
Bso31I	GGTCTC	2 cut(s)	553, 683
BsoBI	CYCGRG	2 cut(s)	666, 741
Bsp119I	TTCGAA	1 cut(s)	467
Bsp1286I	GDGCHC	1 cut(s)	694
Bsp143I	GATC	4 cut(s)	6, 990, 1005, 1219
Bsp19I	CCATGG	2 cut(s)	847, 1261
BspACI	CCGC	7 cut(s)	11, 18, 540, 801, 837, 969, 1176
BspANI	GGCC	5 cut(s)	237, 367, 663, 846, 1163
BspFNI	CGCG	1 cut(s)	89
BspLI	GGNNCC	6 cut(s)	304, 321, 520, 664, 693, 1267
BspPI	GGATC	2 cut(s)	1013, 1227
BspT104I	TTCGAA	1 cut(s)	467
BspT107I	GGYRCC	4 cut(s)	302, 319, 518, 1265
BspTNI	GGTCTC	2 cut(s)	553, 683
BsrDI	GCAATG	2 cut(s)	664, 1080
BsrI	ACTGG	1 cut(s)	778
BssECI	CCNNGG	3 cut(s)	312, 847, 1261
BssMI	GATC	4 cut(s)	6, 990, 1005, 1219
BssNI	GRCGYC	1 cut(s)	519
BssT1I	CCWWGG	2 cut(s)	847, 1261
Bst2UI	CCWGG	2 cut(s)	314, 843
Bst4CI	ACNGT	2 cut(s)	704, 890
Bst6I	CTCTTC	2 cut(s)	894, 1276
BstACI	GRCGYC	1 cut(s)	519
BstBI	TTCGAA	1 cut(s)	467
BstC8I	GCNNGC	2 cut(s)	538, 1165
BstDSI	CCRYGG	2 cut(s)	847, 1261
BstF5I	GGATG	1 cut(s)	1184
BstFNI	CGCG	1 cut(s)	89
BstH2I	RGCGCY	1 cut(s)	522
BstHHI	GCGC	4 cut(s)	91, 521, 1139, 1169
BstKTI	GATC	4 cut(s)	9, 993, 1008, 1222
BstMAI	GTCTC	2 cut(s)	553, 683
BstMBI	GATC	4 cut(s)	6, 990, 1005, 1219
BstMWI	GCNNNNNNNGC	7 cut(s)	185, 275, 284, 651, 660, 843, 1173
BstNI	CCWGG	2 cut(s)	314, 843
BstSCI	CCNGG	2 cut(s)	312, 841
BstUI	CGCG	1 cut(s)	89
BstV1I	GCAGC	2 cut(s)	539, 641
BstV2I	GAAGAC	1 cut(s)	1023
BstX2I	RGATCY	2 cut(s)	6, 1219
BstXI	CCANNNNNNTGG	2 cut(s)	28, 1159
BstYI	RGATCY	2 cut(s)	6, 1219
BsuRI	GGCC	5 cut(s)	237, 367, 663, 846, 1163
BtgI	CCRYGG	2 cut(s)	847, 1261
BtrI	CACGTC	1 cut(s)	1108
BtsCI	GGATG	1 cut(s)	1184
Cac8I	GCNNGC	2 cut(s)	538, 1165
CfoI	GCGC	4 cut(s)	91, 521, 1139, 1169
Cfr13I	GGNCC	4 cut(s)	31, 365, 662, 839
Csp6I	GTAC	4 cut(s)	320, 473, 1094, 1114
CviAII	CATG	9 cut(s)	69, 270, 435, 590, 848, 878, 960, 1262, 1296
CviQI	GTAC	4 cut(s)	320, 473, 1094, 1114
DinI	GGCGCC	1 cut(s)	520
DpnI	GATC	4 cut(s)	8, 992, 1007, 1221
DpnII	GATC	4 cut(s)	6, 990, 1005, 1219
Eam1104I	CTCTTC	2 cut(s)	894, 1276
EarI	CTCTTC	2 cut(s)	894, 1276
EciI	GGCGGA	1 cut(s)	1191
Eco130I	CCWWGG	2 cut(s)	847, 1261
Eco24I	GRGCYC	1 cut(s)	694
Eco31I	GGTCTC	2 cut(s)	553, 683
Eco47I	GGWCC	2 cut(s)	31, 839
Eco57I	CTGAAG	1 cut(s)	1053
Eco88I	CYCGRG	2 cut(s)	666, 741
EcoO109I	RGGNCCY	1 cut(s)	365
EcoRII	CCWGG	2 cut(s)	312, 841
EcoT14I	CCWWGG	2 cut(s)	847, 1261
EcoT38I	GRGCYC	1 cut(s)	694
EgeI	GGCGCC	1 cut(s)	520
EheI	GGCGCC	1 cut(s)	520
ErhI	CCWWGG	2 cut(s)	847, 1261
FaeI	CATG	9 cut(s)	72, 273, 438, 593, 851, 881, 963, 1265, 1299
FalI	AAGNNNNNCTT	2 cut(s)	291, 323
FaqI	GGGAC	2 cut(s)	946, 1277
FatI	CATG	9 cut(s)	68, 269, 434, 589, 847, 877, 959, 1261, 1295
FauI	CCCGC	1 cut(s)	18
Fnu4HI	GCNGC	2 cut(s)	553, 655
FokI	GGATG	1 cut(s)	1191
FriOI	GRGCYC	1 cut(s)	694
Fsp4HI	GCNGC	2 cut(s)	553, 655
FspBI	CTAG	4 cut(s)	239, 378, 869, 984
FspI	TGCGCA	1 cut(s)	1168
GlaI	GCGC	4 cut(s)	90, 520, 1138, 1168
GluI	GCNGC	2 cut(s)	553, 655
HaeII	RGCGCY	1 cut(s)	522
HaeIII	GGCC	5 cut(s)	237, 367, 663, 846, 1163
HhaI	GCGC	4 cut(s)	91, 521, 1139, 1169
Hin1I	GRCGYC	1 cut(s)	519
Hin1II	CATG	9 cut(s)	72, 273, 438, 593, 851, 881, 963, 1265, 1299
Hin6I	GCGC	4 cut(s)	89, 519, 1137, 1167
HinP1I	GCGC	4 cut(s)	89, 519, 1137, 1167
HincII	GTYRAC	1 cut(s)	875
HindII	GTYRAC	1 cut(s)	875
HindIII	AAGCTT	1 cut(s)	534
HinfI	GANTC	5 cut(s)	336, 457, 604, 744, 951
HphI	GGTGA	2 cut(s)	48, 788
Hpy166II	GTNNAC	1 cut(s)	875
Hpy188I	TCNGA	1 cut(s)	1219
Hpy188III	TCNNGA	4 cut(s)	394, 817, 955, 975
Hpy8I	GTNNAC	1 cut(s)	875
Hpy99I	CGWCG	1 cut(s)	1109
HpyAV	CCTTC	9 cut(s)	178, 268, 356, 463, 542, 934, 959, 1285, 1296
HpyCH4III	ACNGT	2 cut(s)	704, 890
HpyCH4IV	ACGT	3 cut(s)	1107, 1112, 1203
HpyCH4V	TGCA	9 cut(s)	77, 287, 372, 416, 434, 657, 907, 921, 1182
HpyF10VI	GCNNNNNNNGC	7 cut(s)	185, 275, 284, 651, 660, 843, 1173
HpySE526I	ACGT	3 cut(s)	1107, 1112, 1203
Hsp92I	GRCGYC	1 cut(s)	519
Hsp92II	CATG	9 cut(s)	72, 273, 438, 593, 851, 881, 963, 1265, 1299
HspAI	GCGC	4 cut(s)	89, 519, 1137, 1167
KasI	GGCGCC	1 cut(s)	518
KpnI	GGTACC	1 cut(s)	323
Kzo9I	GATC	4 cut(s)	6, 990, 1005, 1219
LmnI	GCTCC	2 cut(s)	275, 697
Lsp1109I	GCAGC	2 cut(s)	539, 641
LweI	GCATC	2 cut(s)	296, 1169
MaeI	CTAG	4 cut(s)	239, 378, 869, 984
MaeII	ACGT	3 cut(s)	1107, 1112, 1203
MaeIII	GTNAC	3 cut(s)	745, 1108, 1204
MalI	GATC	4 cut(s)	8, 992, 1007, 1221
MboI	GATC	4 cut(s)	6, 990, 1005, 1219
MboII	GAAGA	7 cut(s)	16, 750, 911, 1000, 1028, 1214, 1263
MfeI	CAATTG	2 cut(s)	599, 916
MflI	RGATCY	2 cut(s)	6, 1219
MhlI	GDGCHC	1 cut(s)	694
MluCI	AATT	9 cut(s)	36, 48, 388, 504, 599, 615, 720, 750, 916
Mly113I	GGCGCC	1 cut(s)	519
MlyI	GAGTC	2 cut(s)	613, 753
MnlI	CCTC	8 cut(s)	145, 272, 488, 491, 895, 994, 1227, 1279
MseI	TTAA	2 cut(s)	344, 831
MslI	CAYNNNNRTG	1 cut(s)	1193
MspR9I	CCNGG	2 cut(s)	314, 843
MunI	CAATTG	2 cut(s)	599, 916
MvaI	CCWGG	2 cut(s)	314, 843
MvnI	CGCG	1 cut(s)	89
MwoI	GCNNNNNNNGC	7 cut(s)	185, 275, 284, 651, 660, 843, 1173
NarI	GGCGCC	1 cut(s)	519
NcoI	CCATGG	2 cut(s)	847, 1261
NdeII	GATC	4 cut(s)	6, 990, 1005, 1219
NlaIII	CATG	9 cut(s)	72, 273, 438, 593, 851, 881, 963, 1265, 1299
NlaIV	GGNNCC	6 cut(s)	304, 321, 520, 664, 693, 1267
NmuCI	GTSAC	3 cut(s)	745, 1108, 1204
NsbI	TGCGCA	1 cut(s)	1168
NspV	TTCGAA	1 cut(s)	467
PfeI	GAWTC	3 cut(s)	336, 457, 951
PflMI	CCANNNNNTGG	1 cut(s)	848
PkrI	GCNGC	2 cut(s)	554, 656
PleI	GAGTC	2 cut(s)	612, 752
PluTI	GGCGCC	1 cut(s)	522
PpsI	GAGTC	2 cut(s)	612, 752
Psp6I	CCWGG	2 cut(s)	312, 841
PspGI	CCWGG	2 cut(s)	312, 841
PspN4I	GGNNCC	6 cut(s)	304, 321, 520, 664, 693, 1267
PspPI	GGNCC	4 cut(s)	31, 365, 662, 839
PsuI	RGATCY	2 cut(s)	6, 1219
RsaI	GTAC	4 cut(s)	321, 474, 1095, 1115
RsaNI	GTAC	4 cut(s)	320, 473, 1094, 1114
RseI	CAYNNNNRTG	1 cut(s)	1193
SaqAI	TTAA	2 cut(s)	344, 831
SatI	GCNGC	2 cut(s)	553, 655
Sau3AI	GATC	4 cut(s)	6, 990, 1005, 1219
Sau96I	GGNCC	4 cut(s)	31, 365, 662, 839
SchI	GAGTC	2 cut(s)	613, 753
ScrFI	CCNGG	2 cut(s)	314, 843
SduI	GDGCHC	1 cut(s)	694
SfaNI	GCATC	2 cut(s)	296, 1169
SfoI	GGCGCC	1 cut(s)	520
SfuI	TTCGAA	1 cut(s)	467
SinI	GGWCC	2 cut(s)	31, 839
SmiMI	CAYNNNNRTG	1 cut(s)	1193
SmlI	CTYRAG	2 cut(s)	263, 297
SmoI	CTYRAG	2 cut(s)	263, 297
Sse9I	AATT	9 cut(s)	36, 48, 388, 504, 599, 615, 720, 750, 916
SsiI	CCGC	7 cut(s)	11, 18, 540, 801, 837, 969, 1176
SspDI	GGCGCC	1 cut(s)	518
SspMI	CTAG	4 cut(s)	239, 378, 869, 984
StyD4I	CCNGG	2 cut(s)	312, 841
StyI	CCWWGG	2 cut(s)	847, 1261
TaaI	ACNGT	2 cut(s)	704, 890
TaiI	ACGT	3 cut(s)	1110, 1115, 1206
TaqI	TCGA	4 cut(s)	102, 467, 502, 999
TaqII	GACCGA	2 cut(s)	475, 665
TasI	AATT	9 cut(s)	36, 48, 388, 504, 599, 615, 720, 750, 916
TfiI	GAWTC	3 cut(s)	336, 457, 951
Tru1I	TTAA	2 cut(s)	344, 831
Tru9I	TTAA	2 cut(s)	344, 831
TseFI	GTSAC	3 cut(s)	745, 1108, 1204
TseI	GCWGC	2 cut(s)	552, 654
Tsp45I	GTSAC	3 cut(s)	745, 1108, 1204
TspDTI	ATGAA	4 cut(s)	17, 57, 116, 795
TspGWI	ACGGA	1 cut(s)	1143
Van91I	CCANNNNNTGG	1 cut(s)	848
VpaK11BI	GGWCC	2 cut(s)	31, 839
XapI	RAATTY	1 cut(s)	388
XspI	CTAG	4 cut(s)	239, 378, 869, 984

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.