Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004219.1

Orthogroup ID

OG0002703

Physical Location & Seq

Genomic Coordinates Forward (+)

14785 .. 15506

Gene Structure 722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004219.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

atgtgtggtccaggccatggtataagtgttggaagtcttggtaagcaaggttcttatagcacagtggaagatgtgcaagtgagaaactgcaccttcaacggaacacaaaatggagcaagaatcaagacatggcaaggcgggtcagggtatgctaggaacatcagttttgaggatatcataattcaagcagccaagaaccctatcattatagaccagaagtatactgataatctctctactggaactggaactggaaccctgcttgaccaagaaaatgctgtacaagtgagcgatgtgacattccgtaacattcggggatctgttgctggggatacagccattactttggactgtgaccatcaaattggttgcaaaaacattgtaatggatcacatagacttaacttcatctgttcctggcaagaaggtttctgcccactgcgagaacgttaaaggattatctactttattatctcccagtgtgtcatgtctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

164

Amino Acids

17.3

Weight (kDa)

6.03

Isoelectric Point (pI)

27.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17200
fragaria_vesca	FvH4_1g02040 FvH4_7g04480
malus_domestica	MD11G1182600.v1.1
prunus_persica	Prupe.6G155200_v2.0.a1 Prupe.7G040000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0329731 RchiOBHm_Chr1g0329741
rosa_laevigata	RLG00000007091 RLG00000029867 RLG00000029868 RLG00000030024
rosa_multiflora	Rmu_sc0004219.1_g000003 Rmu_sc0017438.1_g000003 Rmu_sc0018130.1_g000001 Rmu_sc0033936.1_g000002 Rmu_sc0033936.1_g000003
rosa_roxburghii	Rroxscaffold_2G00148230 Rroxscaffold_4G00320740 Rroxscaffold_4G00320750 Rroxscaffold_5G00370820
rosa_rugosa	Rorug01G0082300 Rorug01G0082400.1 Rorug01G0082500 Rorug04G0233600
rosa_samantha	Rh1AG100800 Rh1AG101000 Rh1AG101100 Rh1BG079900 Rh1BG080100 Rh1CG096200 Rh1CG096300 Rh1DG103900 Rh4AG289500 Rh4BG295500 Rh4CG311000 Rh4DG292400
rosa_wichuraiana	Rw1G007960 Rw1G007970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	17
AccI	GTMKAC	1 cut(s)	221
AciI	CCGC	1 cut(s)	138
AclI	AACGTT	1 cut(s)	447
AclWI	GGATC	2 cut(s)	325, 396
AfaI	GTAC	1 cut(s)	282
AfiI	CCNNNNNNNGG	1 cut(s)	17
AgsI	TTSAA	2 cut(s)	97, 185
AjnI	CCWGG	2 cut(s)	10, 415
AlwI	GGATC	2 cut(s)	325, 396
AoxI	GGCC	1 cut(s)	13
ApeKI	GCWGC	1 cut(s)	188
AspS9I	GGNCC	1 cut(s)	8
AvaII	GGWCC	1 cut(s)	8
BbvI	GCAGC	1 cut(s)	200
BccI	CCATC	1 cut(s)	366
BciT130I	CCWGG	2 cut(s)	12, 417
BciVI	GTATCC	1 cut(s)	325
BfaI	CTAG	1 cut(s)	153
BfuI	GTATCC	1 cut(s)	325
BisI	GCNGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	190
Bme1390I	CCNGG	2 cut(s)	12, 417
Bme18I	GGWCC	1 cut(s)	8
BmgT120I	GGNCC	1 cut(s)	8
BmiI	GGNNCC	1 cut(s)	256
BmrFI	CCNGG	2 cut(s)	12, 417
BmrI	ACTGGG	1 cut(s)	471
BmuI	ACTGGG	1 cut(s)	471
BsaJI	CCNNGG	1 cut(s)	16
Bsc4I	CCNNNNNNNGG	1 cut(s)	17
Bse1I	ACTGG	4 cut(s)	244, 250, 256, 477
BseBI	CCWGG	2 cut(s)	12, 417
BseDI	CCNNGG	1 cut(s)	16
BseLI	CCNNNNNNNGG	1 cut(s)	17
BseNI	ACTGG	4 cut(s)	244, 250, 256, 477
BseXI	GCAGC	1 cut(s)	200
BseYI	CCCAGC	1 cut(s)	326
BsgI	GTGCAG	1 cut(s)	73
BshFI	GGCC	1 cut(s)	15
BslI	CCNNNNNNNGG	1 cut(s)	17
BsnI	GGCC	1 cut(s)	15
Bsp1407I	TGTACA	1 cut(s)	280
Bsp143I	GATC	2 cut(s)	317, 388
Bsp19I	CCATGG	1 cut(s)	16
BspACI	CCGC	1 cut(s)	138
BspANI	GGCC	1 cut(s)	15
BspLI	GGNNCC	1 cut(s)	256
BspPI	GGATC	2 cut(s)	325, 396
BsrGI	TGTACA	1 cut(s)	280
BsrI	ACTGG	4 cut(s)	244, 250, 256, 477
BssECI	CCNNGG	1 cut(s)	16
BssMI	GATC	2 cut(s)	317, 388
BssNAI	GTATAC	1 cut(s)	222
BssT1I	CCWWGG	1 cut(s)	16
Bst1107I	GTATAC	1 cut(s)	222
Bst2UI	CCWGG	2 cut(s)	12, 417
Bst4CI	ACNGT	2 cut(s)	64, 353
BstAUI	TGTACA	1 cut(s)	280
BstDSI	CCRYGG	1 cut(s)	16
BstKTI	GATC	2 cut(s)	320, 391
BstMBI	GATC	2 cut(s)	317, 388
BstNI	CCWGG	2 cut(s)	12, 417
BstSCI	CCNGG	2 cut(s)	10, 415
BstV1I	GCAGC	1 cut(s)	200
BstX2I	RGATCY	1 cut(s)	317
BstXI	CCANNNNNNTGG	2 cut(s)	346, 365
BstYI	RGATCY	1 cut(s)	317
BstZ17I	GTATAC	1 cut(s)	222
BsuI	GTATCC	1 cut(s)	325
BsuRI	GGCC	1 cut(s)	15
BtgI	CCRYGG	1 cut(s)	16
BtgZI	GCGATG	1 cut(s)	306
BtsI	GCAGTG	1 cut(s)	436
BtsIMutI	CAGTG	3 cut(s)	69, 436, 484
Cfr13I	GGNCC	1 cut(s)	8
Csp6I	GTAC	1 cut(s)	281
CviAII	CATG	3 cut(s)	17, 129, 486
CviJI	RGCY	3 cut(s)	15, 191, 338
CviKI_1	RGCY	3 cut(s)	15, 191, 338
CviQI	GTAC	1 cut(s)	281
DpnI	GATC	2 cut(s)	319, 390
DpnII	GATC	2 cut(s)	317, 388
Eco130I	CCWWGG	1 cut(s)	16
Eco32I	GATATC	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	8
EcoRII	CCWGG	2 cut(s)	10, 415
EcoRV	GATATC	1 cut(s)	175
EcoT14I	CCWWGG	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	16
FaeI	CATG	3 cut(s)	20, 132, 489
FatI	CATG	3 cut(s)	16, 128, 485
FauI	CCCGC	1 cut(s)	131
FblI	GTMKAC	1 cut(s)	221
Fnu4HI	GCNGC	1 cut(s)	189
Fsp4HI	GCNGC	1 cut(s)	189
FspBI	CTAG	1 cut(s)	153
GluI	GCNGC	1 cut(s)	189
GsaI	CCCAGC	1 cut(s)	330
HaeIII	GGCC	1 cut(s)	15
Hin1II	CATG	3 cut(s)	20, 132, 489
HinfI	GANTC	1 cut(s)	120
Hpy166II	GTNNAC	1 cut(s)	222
Hpy188III	TCNNGA	1 cut(s)	124
Hpy8I	GTNNAC	1 cut(s)	222
HpyAV	CCTTC	2 cut(s)	103, 418
HpyCH4III	ACNGT	2 cut(s)	64, 353
HpyCH4IV	ACGT	1 cut(s)	447
HpyCH4V	TGCA	3 cut(s)	76, 90, 372
HpySE526I	ACGT	1 cut(s)	447
Hsp92II	CATG	3 cut(s)	20, 132, 489
Kzo9I	GATC	2 cut(s)	317, 388
LmnI	GCTCC	1 cut(s)	113
Lsp1109I	GCAGC	1 cut(s)	200
MaeI	CTAG	1 cut(s)	153
MaeII	ACGT	1 cut(s)	447
MaeIII	GTNAC	3 cut(s)	295, 305, 353
MalI	GATC	2 cut(s)	319, 390
MboI	GATC	2 cut(s)	317, 388
MboII	GAAGA	1 cut(s)	80
MflI	RGATCY	1 cut(s)	317
MluCI	AATT	2 cut(s)	180, 363
MmeI	TCCRAC	1 cut(s)	10
MnlI	CCTC	1 cut(s)	163
MseI	TTAA	3 cut(s)	401, 450, 493
MslI	CAYNNNNRTG	1 cut(s)	383
MspR9I	CCNGG	2 cut(s)	12, 417
MvaI	CCWGG	2 cut(s)	12, 417
NcoI	CCATGG	1 cut(s)	16
NdeII	GATC	2 cut(s)	317, 388
NlaIII	CATG	3 cut(s)	20, 132, 489
NlaIV	GGNNCC	1 cut(s)	256
NmuCI	GTSAC	2 cut(s)	295, 353
PfeI	GAWTC	1 cut(s)	120
PflMI	CCANNNNNTGG	1 cut(s)	17
PkrI	GCNGC	1 cut(s)	190
Psp1406I	AACGTT	1 cut(s)	447
Psp6I	CCWGG	2 cut(s)	10, 415
PspFI	CCCAGC	1 cut(s)	326
PspGI	CCWGG	2 cut(s)	10, 415
PspN4I	GGNNCC	1 cut(s)	256
PspPI	GGNCC	1 cut(s)	8
PsrI	GAACNNNNNNTAC	2 cut(s)	34, 66
PsuI	RGATCY	1 cut(s)	317
RsaI	GTAC	1 cut(s)	282
RsaNI	GTAC	1 cut(s)	281
RseI	CAYNNNNRTG	1 cut(s)	383
SaqAI	TTAA	3 cut(s)	401, 450, 493
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	2 cut(s)	317, 388
Sau96I	GGNCC	1 cut(s)	8
ScrFI	CCNGG	2 cut(s)	12, 417
SetI	ASST	4 cut(s)	52, 95, 429, 450
SinI	GGWCC	1 cut(s)	8
SmiMI	CAYNNNNRTG	1 cut(s)	383
Sse9I	AATT	2 cut(s)	180, 363
SsiI	CCGC	1 cut(s)	138
SspMI	CTAG	1 cut(s)	153
StyD4I	CCNGG	2 cut(s)	10, 415
StyI	CCWWGG	1 cut(s)	16
TaaI	ACNGT	2 cut(s)	64, 353
TaiI	ACGT	1 cut(s)	450
TasI	AATT	2 cut(s)	180, 363
TatI	WGTACW	1 cut(s)	280
TfiI	GAWTC	1 cut(s)	120
Tru1I	TTAA	3 cut(s)	401, 450, 493
Tru9I	TTAA	3 cut(s)	401, 450, 493
TscAI	CASTG	3 cut(s)	69, 443, 484
TseFI	GTSAC	2 cut(s)	295, 353
TseI	GCWGC	1 cut(s)	188
Tsp45I	GTSAC	2 cut(s)	295, 353
TspDTI	ATGAA	1 cut(s)	396
TspGWI	ACGGA	2 cut(s)	114, 293
TspRI	CASTG	3 cut(s)	69, 443, 484
Van91I	CCANNNNNTGG	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	8
XmiI	GTMKAC	1 cut(s)	221
XspI	CTAG	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.