Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002703

Physical Location & Seq

Genomic Coordinates Reverse (-)

20655634 .. 20657977

Gene Structure 2344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG096300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGAGGGTCGAATACTTGCTACGATGTTTATGTTCATGATCATTATGGTTGCTTCACCTTCACCAAGTTCATGTGCCAGACTTAATGGTTTTCCCACAACATATACTTTAAGAGATGATGGTGCCATTGGTTATTATGGTGATCAAGTTGCTGCTGCGACATCAAATTCATTTCATGATAAGGAGTATGGTGGTGTTTTTGCAACCCCAAATACATTCAAAGAGTATTATCGTCCTCTTGCAAATCGCCAAACCGATGATGATTTACAAGCATTCCCAGATGCATGGAGATCACTTGCAAAAAGCGAATTCAATGTGATGAATTATGGCGCTGTTGGGAATGGCCAAGTTGATGATACACAAGCCTTTCTAAAAGCATGGGGAGATGTTTGTGGATCCACTCAAGGCATCCCTACACTTATTATACCAAAGGGCAACACTTTCTTGCTCAATTCTGTGGAGTTTAAAGGACCCTGCAAGGCTGCAAGTGTAAATTTCCAGCTAAGTGGGAACATTGTTGCACCAAATAATATAAATGCTTGGAAAGACAAGGAGAAATGGATTCAGTTTTATGATGTTGAAGGGCTGATAATCAATGGAGGAGGTCAAATTGATGGTCAAGGTGACGTTTGGTGGAAAGTTTGCGACAATTCAAATTGCCAACGACCAACATCTGAAGGTGCTTATAACACAGTGGAAGATGTGCAAGTGAGAAACTGCACCCTGAAGGGAACAGATAATGGAGCAAGAATCAAGACATGGCAAGGCGGGTCAGGGTATGCTAGGAACATCAGTTTTGAGGATATCATAATTCAAGAAGTCAAGAACCCCATCATTATAGACCAGAAGTATATTGATAAGAGCATTACTGGAACTGGAACCTTGCTTGGCCAAGGAAGTGCTGTAAAAGTGAGCGATGTGACATTCCGTAACATTCGAGGATCTGTTGCTGGGGAAACAGCCATTACTTTGGACTGTGACGATCAAATTGGTTGCAAAAACATTGTAATGGATAACATAGACTTGACTTCATCTGTTCCTGGCAAGAAGGTTTCTGCCCAGTGCAAGAACGTTCAAGGATTTTCTACTTCATTATCTCCTAGTGTGCCATGCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

372

Amino Acids

40.37

Weight (kDa)

5.03

Isoelectric Point (pI)

25.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_28	PF00295	135 - 219	2.1e-12	Glycosyl hydrolases family 28
Glyco_hydro_28	PF00295	226 - 359	2.7e-35	Glycosyl hydrolases family 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17200
fragaria_vesca	FvH4_1g02040 FvH4_7g04480
malus_domestica	MD11G1182600.v1.1
prunus_persica	Prupe.6G155200_v2.0.a1 Prupe.7G040000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0329731 RchiOBHm_Chr1g0329741
rosa_laevigata	RLG00000007091 RLG00000029867 RLG00000029868 RLG00000030024
rosa_multiflora	Rmu_sc0004219.1_g000003 Rmu_sc0017438.1_g000003 Rmu_sc0018130.1_g000001 Rmu_sc0033936.1_g000002 Rmu_sc0033936.1_g000003
rosa_roxburghii	Rroxscaffold_2G00148230 Rroxscaffold_4G00320740 Rroxscaffold_4G00320750 Rroxscaffold_5G00370820
rosa_rugosa	Rorug01G0082300 Rorug01G0082400.1 Rorug01G0082500 Rorug04G0233600
rosa_samantha	Rh1AG100800 Rh1AG101000 Rh1AG101100 Rh1BG079900 Rh1BG080100 Rh1CG096200 Rh1CG096300 Rh1DG103900 Rh4AG289500 Rh4BG295500 Rh4CG311000 Rh4DG292400
rosa_wichuraiana	Rw1G007960 Rw1G007970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	687
AccB1I	GGYRCC	1 cut(s)	122
AciI	CCGC	1 cut(s)	768
AclI	AACGTT	1 cut(s)	1071
AclWI	GGATC	3 cut(s)	390, 403, 949
AcoI	YGGCCR	2 cut(s)	343, 889
AcsI	RAATTY	3 cut(s)	166, 308, 493
AcuI	CTGAAG	2 cut(s)	696, 746
AgsI	TTSAA	6 cut(s)	220, 313, 581, 654, 815, 1076
AjnI	CCWGG	1 cut(s)	1039
AluBI	AGCT	1 cut(s)	502
AluI	AGCT	1 cut(s)	502
AlwI	GGATC	3 cut(s)	390, 403, 949
AoxI	GGCC	2 cut(s)	343, 889
ApeKI	GCWGC	3 cut(s)	152, 155, 482
ApoI	RAATTY	3 cut(s)	166, 308, 493
ArsI	GACNNNNNNTTYG	2 cut(s)	601, 633
AspLEI	GCGC	1 cut(s)	332
AspS9I	GGNCC	1 cut(s)	470
AsuHPI	GGTGA	4 cut(s)	48, 54, 152, 635
AvaII	GGWCC	1 cut(s)	470
BalI	TGGCCA	2 cut(s)	345, 891
BamHI	GGATCC	1 cut(s)	395
BanI	GGYRCC	1 cut(s)	122
BbvI	GCAGC	3 cut(s)	139, 142, 469
BccI	CCATC	3 cut(s)	113, 608, 839
BciT130I	CCWGG	1 cut(s)	1041
BclI	TGATCA	2 cut(s)	39, 142
BfaI	CTAG	2 cut(s)	783, 1101
BfoI	RGCGCY	1 cut(s)	333
BisI	GCNGC	3 cut(s)	153, 156, 483
BlsI	GCNGC	3 cut(s)	154, 157, 484
Bme1390I	CCNGG	1 cut(s)	1041
Bme18I	GGWCC	1 cut(s)	470
BmgT120I	GGNCC	1 cut(s)	470
BmiI	GGNNCC	4 cut(s)	124, 397, 472, 880
BmrFI	CCNGG	1 cut(s)	1041
BmrI	ACTGGG	1 cut(s)	1054
BmsI	GCATC	2 cut(s)	271, 417
BmuI	ACTGGG	1 cut(s)	1054
BpuEI	CTTGAG	1 cut(s)	387
BsaJI	CCNNGG	1 cut(s)	892
Bse1I	ACTGG	3 cut(s)	874, 880, 1060
BseBI	CCWGG	1 cut(s)	1041
BseDI	CCNNGG	1 cut(s)	892
BseGI	GGATG	1 cut(s)	408
BseNI	ACTGG	3 cut(s)	874, 880, 1060
BseRI	GAGGAG	1 cut(s)	615
BseXI	GCAGC	3 cut(s)	139, 142, 469
BseYI	CCCAGC	1 cut(s)	950
BsgI	GTGCAG	1 cut(s)	703
BshFI	GGCC	2 cut(s)	345, 891
BshNI	GGYRCC	1 cut(s)	122
BsmI	GAATGC	1 cut(s)	272
BsnI	GGCC	2 cut(s)	345, 891
Bsp143I	GATC	6 cut(s)	39, 142, 290, 395, 941, 982
BspACI	CCGC	1 cut(s)	768
BspANI	GGCC	2 cut(s)	345, 891
BspHI	TCATGA	2 cut(s)	36, 175
BspLI	GGNNCC	4 cut(s)	124, 397, 472, 880
BspPI	GGATC	3 cut(s)	390, 403, 949
BspT107I	GGYRCC	1 cut(s)	122
BsrI	ACTGG	3 cut(s)	874, 880, 1060
BssECI	CCNNGG	1 cut(s)	892
BssMI	GATC	6 cut(s)	39, 142, 290, 395, 941, 982
BssT1I	CCWWGG	1 cut(s)	892
Bst2UI	CCWGG	1 cut(s)	1041
Bst4CI	ACNGT	2 cut(s)	694, 977
BstDEI	CTNAG	1 cut(s)	503
BstF5I	GGATG	1 cut(s)	408
BstH2I	RGCGCY	1 cut(s)	333
BstHHI	GCGC	1 cut(s)	332
BstKTI	GATC	6 cut(s)	42, 145, 293, 398, 944, 985
BstMBI	GATC	6 cut(s)	39, 142, 290, 395, 941, 982
BstNI	CCWGG	1 cut(s)	1041
BstSCI	CCNGG	1 cut(s)	1039
BstV1I	GCAGC	3 cut(s)	139, 142, 469
BstX2I	RGATCY	2 cut(s)	395, 941
BstXI	CCANNNNNNTGG	3 cut(s)	285, 506, 970
BstYI	RGATCY	2 cut(s)	395, 941
BsuRI	GGCC	2 cut(s)	345, 891
BtgZI	GCGATG	1 cut(s)	930
BtsCI	GGATG	1 cut(s)	408
BtsIMutI	CAGTG	2 cut(s)	699, 1067
CciI	TCATGA	2 cut(s)	36, 175
CfoI	GCGC	1 cut(s)	332
Cfr13I	GGNCC	1 cut(s)	470
CviAII	CATG	7 cut(s)	37, 72, 176, 285, 378, 759, 1110
CviJI	RGCY	7 cut(s)	345, 365, 482, 502, 586, 891, 962
CviKI_1	RGCY	7 cut(s)	345, 365, 482, 502, 586, 891, 962
DdeI	CTNAG	1 cut(s)	503
DpnI	GATC	6 cut(s)	41, 144, 292, 397, 943, 984
DpnII	GATC	6 cut(s)	39, 142, 290, 395, 941, 982
DraI	TTTAAA	1 cut(s)	466
EaeI	YGGCCR	2 cut(s)	343, 889
Eco130I	CCWWGG	1 cut(s)	892
Eco32I	GATATC	1 cut(s)	805
Eco47I	GGWCC	1 cut(s)	470
Eco57I	CTGAAG	2 cut(s)	696, 746
EcoO109I	RGGNCCY	1 cut(s)	470
EcoRI	GAATTC	1 cut(s)	308
EcoRII	CCWGG	1 cut(s)	1039
EcoRV	GATATC	1 cut(s)	805
EcoT14I	CCWWGG	1 cut(s)	892
EcoT22I	ATGCAT	1 cut(s)	286
ErhI	CCWWGG	1 cut(s)	892
FaeI	CATG	7 cut(s)	40, 75, 179, 288, 381, 762, 1113
FatI	CATG	7 cut(s)	36, 71, 175, 284, 377, 758, 1109
FauI	CCCGC	1 cut(s)	761
FbaI	TGATCA	2 cut(s)	39, 142
Fnu4HI	GCNGC	3 cut(s)	153, 156, 483
FokI	GGATG	1 cut(s)	395
Fsp4HI	GCNGC	3 cut(s)	153, 156, 483
FspBI	CTAG	2 cut(s)	783, 1101
GlaI	GCGC	1 cut(s)	331
GluI	GCNGC	3 cut(s)	153, 156, 483
GsaI	CCCAGC	1 cut(s)	954
HaeII	RGCGCY	1 cut(s)	333
HaeIII	GGCC	2 cut(s)	345, 891
HhaI	GCGC	1 cut(s)	332
Hin1II	CATG	7 cut(s)	40, 75, 179, 288, 381, 762, 1113
Hin6I	GCGC	1 cut(s)	330
HinP1I	GCGC	1 cut(s)	330
HinfI	GANTC	2 cut(s)	562, 750
HphI	GGTGA	4 cut(s)	48, 54, 152, 635
Hpy188I	TCNGA	1 cut(s)	676
Hpy188III	TCNNGA	5 cut(s)	37, 176, 754, 815, 823
HpyAV	CCTTC	5 cut(s)	69, 575, 671, 721, 1042
HpyCH4III	ACNGT	2 cut(s)	694, 977
HpyCH4IV	ACGT	2 cut(s)	627, 1071
HpyF3I	CTNAG	1 cut(s)	503
HpySE526I	ACGT	2 cut(s)	627, 1071
Hsp92II	CATG	7 cut(s)	40, 75, 179, 288, 381, 762, 1113
HspAI	GCGC	1 cut(s)	330
Ksp22I	TGATCA	2 cut(s)	39, 142
Kzo9I	GATC	6 cut(s)	39, 142, 290, 395, 941, 982
LmnI	GCTCC	1 cut(s)	743
Lsp1109I	GCAGC	3 cut(s)	139, 142, 469
LweI	GCATC	2 cut(s)	271, 417
MaeI	CTAG	2 cut(s)	783, 1101
MaeII	ACGT	2 cut(s)	627, 1071
MaeIII	GTNAC	4 cut(s)	623, 919, 929, 977
MalI	GATC	6 cut(s)	41, 144, 292, 397, 943, 984
MboI	GATC	6 cut(s)	39, 142, 290, 395, 941, 982
MboII	GAAGA	1 cut(s)	710
MflI	RGATCY	2 cut(s)	395, 941
MlsI	TGGCCA	2 cut(s)	345, 891
MluNI	TGGCCA	2 cut(s)	345, 891
MnlI	CCTC	5 cut(s)	246, 593, 596, 793, 932
Mox20I	TGGCCA	2 cut(s)	345, 891
Mph1103I	ATGCAT	1 cut(s)	286
MscI	TGGCCA	2 cut(s)	345, 891
MseI	TTAA	4 cut(s)	84, 110, 465, 1117
MslI	CAYNNNNRTG	1 cut(s)	1007
Msp20I	TGGCCA	2 cut(s)	345, 891
MspR9I	CCNGG	1 cut(s)	1041
Mva1269I	GAATGC	1 cut(s)	272
MvaI	CCWGG	1 cut(s)	1041
NdeII	GATC	6 cut(s)	39, 142, 290, 395, 941, 982
NlaIII	CATG	7 cut(s)	40, 75, 179, 288, 381, 762, 1113
NlaIV	GGNNCC	4 cut(s)	124, 397, 472, 880
NmuCI	GTSAC	3 cut(s)	623, 919, 977
NsiI	ATGCAT	1 cut(s)	286
PagI	TCATGA	2 cut(s)	36, 175
PctI	GAATGC	1 cut(s)	272
PfeI	GAWTC	2 cut(s)	562, 750
PkrI	GCNGC	3 cut(s)	154, 157, 484
PpuMI	RGGWCCY	1 cut(s)	470
PsiI	TTATAA	1 cut(s)	687
Psp1406I	AACGTT	1 cut(s)	1071
Psp5II	RGGWCCY	1 cut(s)	470
Psp6I	CCWGG	1 cut(s)	1039
PspFI	CCCAGC	1 cut(s)	950
PspGI	CCWGG	1 cut(s)	1039
PspN4I	GGNNCC	4 cut(s)	124, 397, 472, 880
PspPI	GGNCC	1 cut(s)	470
PspPPI	RGGWCCY	1 cut(s)	470
PsuI	RGATCY	2 cut(s)	395, 941
RseI	CAYNNNNRTG	1 cut(s)	1007
SaqAI	TTAA	4 cut(s)	84, 110, 465, 1117
SatI	GCNGC	3 cut(s)	153, 156, 483
Sau3AI	GATC	6 cut(s)	39, 142, 290, 395, 941, 982
Sau96I	GGNCC	1 cut(s)	470
ScrFI	CCNGG	1 cut(s)	1041
SetI	ASST	9 cut(s)	61, 504, 607, 625, 630, 682, 884, 1053, 1074
SfaNI	GCATC	2 cut(s)	271, 417
SinI	GGWCC	1 cut(s)	470
SmiMI	CAYNNNNRTG	1 cut(s)	1007
SmlI	CTYRAG	1 cut(s)	402
SmoI	CTYRAG	1 cut(s)	402
SsiI	CCGC	1 cut(s)	768
SspMI	CTAG	2 cut(s)	783, 1101
StyD4I	CCNGG	1 cut(s)	1039
StyI	CCWWGG	1 cut(s)	892
TaaI	ACNGT	2 cut(s)	694, 977
TaiI	ACGT	2 cut(s)	630, 1074
TaqI	TCGA	2 cut(s)	10, 937
TfiI	GAWTC	2 cut(s)	562, 750
Tru1I	TTAA	4 cut(s)	84, 110, 465, 1117
Tru9I	TTAA	4 cut(s)	84, 110, 465, 1117
TscAI	CASTG	2 cut(s)	699, 1067
TseFI	GTSAC	3 cut(s)	623, 919, 977
TseI	GCWGC	3 cut(s)	152, 155, 482
Tsp45I	GTSAC	3 cut(s)	623, 919, 977
TspDTI	ATGAA	7 cut(s)	25, 60, 159, 164, 335, 1020, 1080
TspGWI	ACGGA	1 cut(s)	917
TspRI	CASTG	2 cut(s)	699, 1067
VpaK11BI	GGWCC	1 cut(s)	470
XapI	RAATTY	3 cut(s)	166, 308, 493
XspI	CTAG	2 cut(s)	783, 1101
Zsp2I	ATGCAT	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.