Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002703

Physical Location & Seq

Genomic Coordinates Forward (+)

13394395 .. 13395718

Gene Structure 1324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0082300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGAATAAGGACAATTCAACTGTAGGTGAAAGCAATGGATATGCTGCATACCGTGATGTTGATCTATCAGTGATGGCATCCGATGAGCTTGCATCTCCTGTCTATATTTATTTTGTTGTGGATTCGGATGATTCGGGGGTGATAGAAGTCAGTATTGGTCCTTCTGATCTCAGTAGTCCTATGAGGAGTAATGCAATATTGAATGGGGTGGAGATCATGAGAATGGTGAATGTGACCAATTTACATGCCCAAACTGTGTCTACTATGTCTAAGAAGAAAAACATATGGATTTGGGTGGCTCCAGTTGTTGGAGGAGGCTTTGTTGTTCTTTGTTTGGCAATGATCTCGGTTTTACTGGCTTTAAAGCGCAAGAAGAAGAAGAAACTGAGAACCAGACCTTCAGAAAGTTTGAATTGGGCACAATTAAGGGTATATGGGGGTAGTTCATACATTATAATGTCTGAATGGACGGCACTTGCATCTCTGAGATCAAATGGATATTATTGCTTAAAAATCCCTTTTGCTGAGTTACAAGCGGCAACAAACAACTTTGATGAAATTCTAATTTGTCGGTTCTGGTGGTTTTGGAATGGTTTACAAAGCAGTCCTGAGGGAAAATACAAAGGGCTTCCTCCTTTGTCGTGGAAGCAACGACTTGAAATATGCATTGGATCAGCAAGAGGCCTTCACTACCTTCATACAGGCTTTGCTCAAGGCATACACCATGACATCAAATCAACTAACATTTTTCTTGATGATAATTATGTGCCTAAGATGGCAGATTTTGGTCTTTCGAGATCAGGGCCATGTCTTGATGAAATCCATGTAAGTATCGGGGTAAAAGGCAGCTTCGGATATCTTGATCCTGAGTACTTCCAGAGGCCTGCTGTTGATCCACTGGTTGAAAGAGAGCAAGTGAACTTAGACGAATGGGCAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

313

Amino Acids

35.03

Weight (kDa)

6.6

Isoelectric Point (pI)

44.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	210 - 293	2.3e-09	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	224 - 294	2.9e-08	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17200
fragaria_vesca	FvH4_1g02040 FvH4_7g04480
malus_domestica	MD11G1182600.v1.1
prunus_persica	Prupe.6G155200_v2.0.a1 Prupe.7G040000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0329731 RchiOBHm_Chr1g0329741
rosa_laevigata	RLG00000007091 RLG00000029867 RLG00000029868 RLG00000030024
rosa_multiflora	Rmu_sc0004219.1_g000003 Rmu_sc0017438.1_g000003 Rmu_sc0018130.1_g000001 Rmu_sc0033936.1_g000002 Rmu_sc0033936.1_g000003
rosa_roxburghii	Rroxscaffold_2G00148230 Rroxscaffold_4G00320740 Rroxscaffold_4G00320750 Rroxscaffold_5G00370820
rosa_rugosa	Rorug01G0082300 Rorug01G0082400.1 Rorug01G0082500 Rorug04G0233600
rosa_samantha	Rh1AG100800 Rh1AG101000 Rh1AG101100 Rh1BG079900 Rh1BG080100 Rh1CG096200 Rh1CG096300 Rh1DG103900 Rh4AG289500 Rh4BG295500 Rh4CG311000 Rh4DG292400
rosa_wichuraiana	Rw1G007960 Rw1G007970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	455
AccB7I	CCANNNNNTGG	1 cut(s)	308
AccI	GTMKAC	1 cut(s)	260
AciI	CCGC	1 cut(s)	536
AclWI	GGATC	3 cut(s)	679, 857, 887
AcsI	RAATTY	1 cut(s)	558
AcuI	CTGAAG	1 cut(s)	384
AfaI	GTAC	1 cut(s)	872
AfiI	CCNNNNNNNGG	1 cut(s)	308
AgsI	TTSAA	5 cut(s)	18, 202, 412, 659, 905
AjuI	GAANNNNNNNTTGG	4 cut(s)	138, 170, 651, 683
AluBI	AGCT	2 cut(s)	88, 849
AluI	AGCT	2 cut(s)	88, 849
AlwI	GGATC	3 cut(s)	679, 857, 887
AoxI	GGCC	3 cut(s)	682, 803, 881
ApeKI	GCWGC	2 cut(s)	44, 846
ApoI	RAATTY	1 cut(s)	558
AspLEI	GCGC	1 cut(s)	369
AspS9I	GGNCC	2 cut(s)	158, 803
AsuHPI	GGTGA	3 cut(s)	38, 151, 238
AvaII	GGWCC	1 cut(s)	158
AxyI	CCTNAGG	1 cut(s)	609
BaeGI	GKGCMC	1 cut(s)	421
BarI	GAAGNNNNNNTAC	2 cut(s)	145, 177
BbvI	GCAGC	2 cut(s)	31, 858
BccI	CCATC	2 cut(s)	67, 769
BceAI	ACGGC	1 cut(s)	486
BcgI	CGANNNNNNTGC	4 cut(s)	71, 105, 327, 361
BfmI	CTRYAG	1 cut(s)	21
BisI	GCNGC	3 cut(s)	45, 537, 847
BlsI	GCNGC	3 cut(s)	46, 538, 848
BmcAI	AGTACT	1 cut(s)	872
Bme18I	GGWCC	1 cut(s)	158
BmgT120I	GGNCC	2 cut(s)	158, 803
BmiI	GGNNCC	1 cut(s)	300
BmsI	GCATC	3 cut(s)	86, 101, 488
BpmI	CTGGAG	1 cut(s)	285
BpuEI	CTTGAG	1 cut(s)	696
BsaBI	GATNNNNATC	1 cut(s)	60
BsaXI	ACNNNNNCTCC	2 cut(s)	306, 336
Bsc4I	CCNNNNNNNGG	1 cut(s)	308
Bse1I	ACTGG	3 cut(s)	302, 360, 903
Bse21I	CCTNAGG	1 cut(s)	609
Bse3DI	GCAATG	3 cut(s)	40, 345, 942
Bse8I	GATNNNNATC	1 cut(s)	60
BseGI	GGATG	2 cut(s)	77, 133
BseJI	GATNNNNATC	1 cut(s)	60
BseLI	CCNNNNNNNGG	1 cut(s)	308
BseMI	GCAATG	3 cut(s)	40, 345, 942
BseMII	CTCAG	6 cut(s)	184, 377, 476, 516, 600, 858
BseNI	ACTGG	3 cut(s)	302, 360, 903
BseRI	GAGGAG	2 cut(s)	199, 327
BseSI	GKGCMC	1 cut(s)	421
BseXI	GCAGC	2 cut(s)	31, 858
BshFI	GGCC	3 cut(s)	684, 805, 883
BslI	CCNNNNNNNGG	1 cut(s)	308
BsnI	GGCC	3 cut(s)	684, 805, 883
Bsp1286I	GDGCHC	1 cut(s)	421
Bsp143I	GATC	9 cut(s)	61, 166, 213, 342, 488, 671, 797, 862, 892
BspACI	CCGC	1 cut(s)	536
BspANI	GGCC	3 cut(s)	684, 805, 883
BspCNI	CTCAG	6 cut(s)	183, 378, 477, 517, 601, 859
BspHI	TCATGA	1 cut(s)	216
BspLI	GGNNCC	1 cut(s)	300
BspPI	GGATC	3 cut(s)	679, 857, 887
BsrDI	GCAATG	3 cut(s)	40, 345, 942
BsrI	ACTGG	3 cut(s)	302, 360, 903
BssMI	GATC	9 cut(s)	61, 166, 213, 342, 488, 671, 797, 862, 892
Bst4CI	ACNGT	3 cut(s)	22, 53, 256
BstC8I	GCNNGC	2 cut(s)	90, 885
BstDEI	CTNAG	9 cut(s)	170, 270, 386, 485, 525, 609, 771, 867, 922
BstF5I	GGATG	2 cut(s)	77, 133
BstHHI	GCGC	1 cut(s)	369
BstKTI	GATC	9 cut(s)	64, 169, 216, 345, 491, 674, 800, 865, 895
BstMBI	GATC	9 cut(s)	61, 166, 213, 342, 488, 671, 797, 862, 892
BstNSI	RCATGY	1 cut(s)	248
BstSFI	CTRYAG	1 cut(s)	21
BstSLI	GKGCMC	1 cut(s)	421
BstV1I	GCAGC	2 cut(s)	31, 858
Bsu36I	CCTNAGG	1 cut(s)	609
BsuRI	GGCC	3 cut(s)	684, 805, 883
BtsCI	GGATG	2 cut(s)	77, 133
BtsIMutI	CAGTG	2 cut(s)	75, 896
Cac8I	GCNNGC	2 cut(s)	90, 885
CciI	TCATGA	1 cut(s)	216
CfoI	GCGC	1 cut(s)	369
Cfr13I	GGNCC	2 cut(s)	158, 803
Csp6I	GTAC	1 cut(s)	871
CviAII	CATG	5 cut(s)	217, 245, 725, 807, 824
CviQI	GTAC	1 cut(s)	871
DdeI	CTNAG	9 cut(s)	170, 270, 386, 485, 525, 609, 771, 867, 922
DpnI	GATC	9 cut(s)	63, 168, 215, 344, 490, 673, 799, 864, 894
DpnII	GATC	9 cut(s)	61, 166, 213, 342, 488, 671, 797, 862, 892
DraI	TTTAAA	1 cut(s)	363
Eco147I	AGGCCT	2 cut(s)	684, 883
Eco32I	GATATC	1 cut(s)	857
Eco47I	GGWCC	1 cut(s)	158
Eco57I	CTGAAG	1 cut(s)	384
Eco81I	CCTNAGG	1 cut(s)	609
EcoRV	GATATC	1 cut(s)	857
EcoT22I	ATGCAT	1 cut(s)	668
FaeI	CATG	5 cut(s)	220, 248, 728, 810, 827
FatI	CATG	5 cut(s)	216, 244, 724, 806, 823
FauNDI	CATATG	1 cut(s)	284
FblI	GTMKAC	1 cut(s)	260
Fnu4HI	GCNGC	3 cut(s)	45, 537, 847
FokI	GGATG	2 cut(s)	64, 140
Fsp4HI	GCNGC	3 cut(s)	45, 537, 847
GlaI	GCGC	1 cut(s)	368
GluI	GCNGC	3 cut(s)	45, 537, 847
GsuI	CTGGAG	1 cut(s)	285
HaeIII	GGCC	3 cut(s)	684, 805, 883
HhaI	GCGC	1 cut(s)	369
Hin1II	CATG	5 cut(s)	220, 248, 728, 810, 827
Hin6I	GCGC	1 cut(s)	367
HinP1I	GCGC	1 cut(s)	367
HinfI	GANTC	2 cut(s)	122, 131
HphI	GGTGA	3 cut(s)	38, 151, 238
Hpy166II	GTNNAC	3 cut(s)	261, 596, 919
Hpy188I	TCNGA	7 cut(s)	82, 127, 166, 403, 463, 486, 854
Hpy188III	TCNNGA	8 cut(s)	217, 608, 752, 795, 812, 860, 866, 877
Hpy8I	GTNNAC	3 cut(s)	261, 596, 919
HpyAV	CCTTC	4 cut(s)	171, 408, 695, 704
HpyCH4III	ACNGT	3 cut(s)	22, 53, 256
HpyCH4V	TGCA	5 cut(s)	47, 92, 194, 479, 666
HpyF3I	CTNAG	9 cut(s)	170, 270, 386, 485, 525, 609, 771, 867, 922
Hsp92II	CATG	5 cut(s)	220, 248, 728, 810, 827
HspAI	GCGC	1 cut(s)	367
Kzo9I	GATC	9 cut(s)	61, 166, 213, 342, 488, 671, 797, 862, 892
LmnI	GCTCC	1 cut(s)	304
Lsp1109I	GCAGC	2 cut(s)	31, 858
LweI	GCATC	3 cut(s)	86, 101, 488
MaeIII	GTNAC	2 cut(s)	232, 528
MalI	GATC	9 cut(s)	63, 168, 215, 344, 490, 673, 799, 864, 894
MboI	GATC	9 cut(s)	61, 166, 213, 342, 488, 671, 797, 862, 892
MboII	GAAGA	4 cut(s)	286, 385, 388, 391
MhlI	GDGCHC	1 cut(s)	421
MluCI	AATT	7 cut(s)	13, 238, 412, 422, 558, 564, 760
MmeI	TCCRAC	1 cut(s)	289
MnlI	CCTC	7 cut(s)	177, 305, 308, 604, 642, 674, 873
Mph1103I	ATGCAT	1 cut(s)	668
MseI	TTAA	3 cut(s)	362, 425, 509
MslI	CAYNNNNRTG	2 cut(s)	221, 455
NdeI	CATATG	1 cut(s)	284
NdeII	GATC	9 cut(s)	61, 166, 213, 342, 488, 671, 797, 862, 892
NlaIII	CATG	5 cut(s)	220, 248, 728, 810, 827
NlaIV	GGNNCC	1 cut(s)	300
NmuCI	GTSAC	1 cut(s)	232
NsiI	ATGCAT	1 cut(s)	668
NspI	RCATGY	1 cut(s)	248
PagI	TCATGA	1 cut(s)	216
PceI	AGGCCT	2 cut(s)	684, 883
PfeI	GAWTC	2 cut(s)	122, 131
PflMI	CCANNNNNTGG	1 cut(s)	308
PkrI	GCNGC	3 cut(s)	46, 538, 848
PsiI	TTATAA	1 cut(s)	455
PspN4I	GGNNCC	1 cut(s)	300
PspPI	GGNCC	2 cut(s)	158, 803
RsaI	GTAC	1 cut(s)	872
RsaNI	GTAC	1 cut(s)	871
RseI	CAYNNNNRTG	2 cut(s)	221, 455
SaqAI	TTAA	3 cut(s)	362, 425, 509
SatI	GCNGC	3 cut(s)	45, 537, 847
Sau3AI	GATC	9 cut(s)	61, 166, 213, 342, 488, 671, 797, 862, 892
Sau96I	GGNCC	2 cut(s)	158, 803
ScaI	AGTACT	1 cut(s)	872
SduI	GDGCHC	1 cut(s)	421
SetI	ASST	5 cut(s)	28, 90, 400, 696, 851
SfaNI	GCATC	3 cut(s)	86, 101, 488
SfcI	CTRYAG	1 cut(s)	21
SinI	GGWCC	1 cut(s)	158
SmiMI	CAYNNNNRTG	2 cut(s)	221, 455
SmlI	CTYRAG	1 cut(s)	711
SmoI	CTYRAG	1 cut(s)	711
Sse9I	AATT	7 cut(s)	13, 238, 412, 422, 558, 564, 760
SseBI	AGGCCT	2 cut(s)	684, 883
SsiI	CCGC	1 cut(s)	536
SspI	AATATT	1 cut(s)	198
StuI	AGGCCT	2 cut(s)	684, 883
TaaI	ACNGT	3 cut(s)	22, 53, 256
TaqI	TCGA	1 cut(s)	794
TasI	AATT	7 cut(s)	13, 238, 412, 422, 558, 564, 760
TatI	WGTACW	1 cut(s)	870
TauI	GCSGC	1 cut(s)	539
TfiI	GAWTC	2 cut(s)	122, 131
Tru1I	TTAA	3 cut(s)	362, 425, 509
Tru9I	TTAA	3 cut(s)	362, 425, 509
TscAI	CASTG	2 cut(s)	75, 903
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	2 cut(s)	44, 846
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	5 cut(s)	17, 435, 570, 686, 831
TspRI	CASTG	2 cut(s)	75, 903
Van91I	CCANNNNNTGG	1 cut(s)	308
VpaK11BI	GGWCC	1 cut(s)	158
XapI	RAATTY	1 cut(s)	558
XceI	RCATGY	1 cut(s)	248
XmiI	GTMKAC	1 cut(s)	260
ZrmI	AGTACT	1 cut(s)	872
Zsp2I	ATGCAT	1 cut(s)	668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.