Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002703

Physical Location & Seq

Genomic Coordinates Forward (+)

60302555 .. 60304687

Gene Structure 2133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG289500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGAGTGCCAAGTTGCTACAATTCTGTTCTTGATCGTTTGCACAGCTTTACTACTACTACCTTCACCTAGCTCATGTGGTAGACCTAATTTTGGAACAACCTCAAATACTGTCAGTCATGATCAACGTTTGAGTTTTTATTATGGCGACGATGGAAGTGGTCGAGCTCAAACCGATGAGTATGGTGCTTTCGCTTATGACCAAACTGATGATCCACAAAAATATTTGGAGGGAACAGCAGCAATAGAGCCTCTCACTTTCAGTGTGATGAATTTTGGCGCTCGTGGCAATGGCCACCATGATGATTCCCAAGCGTTCCTAAAAGCATGGGAGGCTTTATGTGGATCAAGTGATGAAAGAACCCCTTCCCTGCTAATTCCAAAGGAAAGAACATTCTTGTTAAAACCTTTGGTTTTTAAAGGGCCTTGCAAGCCTGAAACCCTTCATTTCCAGTGGGACTTCACAACAATATTGCTGAACGTGGCTCTTAAATTACAGCTCCAAGGGAGACTAGTTGCACCAGATTATAACAGTAAATCATGGGAGTCAGACAAGGAAAAATGGGTTCAGTTCTCAGATGTAGATGGTCTCATAATCAGTGGAGGAGGTCTAGGTGTAATTGATGGTAAGGGTTCCAATTGGTGGAAAGCTTGCGACAACATTGGAAGTCTTGGGAAAAATGGAGCTTACGCCACAGTGGAAGACGTGAACGTGAGAAATTGCACCTTAAGAGGAACACAAAATGGACTACGTATCAAGACATGGCCAGGTGGAAGAGGTTATGCTAGGAATATCACATATGAGGGAATCCGACTTATAGGGTCCAAGAACCCTATCATAATAAACCAGCACTATGTCGATAAAGGCCTGTCCGGGCCAAAAGAAGCTGACCGGAAAAGCTCAGTACAAGTGAGTAATGTGACGTACCATGGAGTGTTGGGATCTTCTGCCAATGAGGTAGCTATCAATTTGAACTGTGCTGGGGGGAGGCGCGGTTGCGACAACATTACAATGGATAACATTCACATTACTTCATCCCTTCCCGGGCAGAAGACTTCTGCCTACTGCAACAATGCCCATGGTACAGCTACACTTGCTATCCCTAATGTCCCATGCCTCTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

374

Amino Acids

40.59

Weight (kDa)

6.7

Isoelectric Point (pI)

32.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_28	PF00295	122 - 217	7.3e-06	Glycosyl hydrolases family 28
Glyco_hydro_28	PF00295	221 - 362	1.8e-32	Glycosyl hydrolases family 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17200
fragaria_vesca	FvH4_1g02040 FvH4_7g04480
malus_domestica	MD11G1182600.v1.1
prunus_persica	Prupe.6G155200_v2.0.a1 Prupe.7G040000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0329731 RchiOBHm_Chr1g0329741
rosa_laevigata	RLG00000007091 RLG00000029867 RLG00000029868 RLG00000030024
rosa_multiflora	Rmu_sc0004219.1_g000003 Rmu_sc0017438.1_g000003 Rmu_sc0018130.1_g000001 Rmu_sc0033936.1_g000002 Rmu_sc0033936.1_g000003
rosa_roxburghii	Rroxscaffold_2G00148230 Rroxscaffold_4G00320740 Rroxscaffold_4G00320750 Rroxscaffold_5G00370820
rosa_rugosa	Rorug01G0082300 Rorug01G0082400.1 Rorug01G0082500 Rorug04G0233600
rosa_samantha	Rh1AG100800 Rh1AG101000 Rh1AG101100 Rh1BG079900 Rh1BG080100 Rh1CG096200 Rh1CG096300 Rh1DG103900 Rh4AG289500 Rh4BG295500 Rh4CG311000 Rh4DG292400
rosa_wichuraiana	Rw1G007960 Rw1G007970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	528
AccB7I	CCANNNNNTGG	1 cut(s)	642
AccI	GTMKAC	1 cut(s)	82
AccII	CGCG	1 cut(s)	993
AciI	CCGC	1 cut(s)	993
AclI	AACGTT	1 cut(s)	127
AclWI	GGATC	3 cut(s)	206, 352, 949
AcoI	YGGCCR	2 cut(s)	292, 764
AcsI	RAATTY	1 cut(s)	271
AfaI	GTAC	3 cut(s)	906, 926, 1084
AfiI	CCNNNNNNNGG	3 cut(s)	92, 642, 1044
AflII	CTTAAG	1 cut(s)	727
AgsI	TTSAA	1 cut(s)	973
AhlI	ACTAGT	1 cut(s)	511
AjiI	CACGTC	1 cut(s)	706
AjnI	CCWGG	1 cut(s)	766
Alw21I	GWGCWC	1 cut(s)	169
Alw26I	GTCTC	2 cut(s)	502, 593
AlwI	GGATC	3 cut(s)	206, 352, 949
Ama87I	CYCGRG	1 cut(s)	1043
AoxI	GGCC	5 cut(s)	292, 422, 764, 865, 875
ApeKI	GCWGC	1 cut(s)	239
ApoI	RAATTY	1 cut(s)	271
Asp700I	GAANNNNTTC	2 cut(s)	364, 441
AspLEI	GCGC	2 cut(s)	281, 993
AspS9I	GGNCC	3 cut(s)	422, 822, 875
AsuC2I	CCSGG	3 cut(s)	874, 1044, 1045
AsuHPI	GGTGA	1 cut(s)	57
AvaI	CYCGRG	1 cut(s)	1043
AvaII	GGWCC	1 cut(s)	822
BalI	TGGCCA	2 cut(s)	294, 766
BanII	GRGCYC	1 cut(s)	169
BauI	CACGAG	2 cut(s)	282, 1120
BbsI	GAAGAC	2 cut(s)	708, 1058
Bbv12I	GWGCWC	1 cut(s)	169
BbvI	GCAGC	1 cut(s)	251
BccI	CCATC	3 cut(s)	146, 578, 617
BciT130I	CCWGG	1 cut(s)	768
BclI	TGATCA	1 cut(s)	121
BcnI	CCSGG	3 cut(s)	874, 1044, 1045
BcoDI	GTCTC	2 cut(s)	502, 593
BcuI	ACTAGT	1 cut(s)	511
BfaI	CTAG	4 cut(s)	69, 512, 611, 786
BfoI	RGCGCY	1 cut(s)	282
BfrI	CTTAAG	1 cut(s)	727
BisI	GCNGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	241
Bme1390I	CCNGG	4 cut(s)	768, 874, 1044, 1045
Bme18I	GGWCC	1 cut(s)	822
BmeT110I	CYCGRG	1 cut(s)	1043
BmgBI	CACGTC	1 cut(s)	706
BmgT120I	GGNCC	3 cut(s)	422, 822, 875
BmiI	GGNNCC	2 cut(s)	634, 823
BmrFI	CCNGG	4 cut(s)	768, 874, 1044, 1045
BpiI	GAAGAC	2 cut(s)	708, 1058
BpuMI	CCSGG	3 cut(s)	874, 1044, 1045
BsaAI	YACGTR	1 cut(s)	752
BsaI	GGTCTC	1 cut(s)	593
BsaJI	CCNNGG	4 cut(s)	502, 928, 1043, 1078
BsaWI	WCCGGW	1 cut(s)	891
BsaXI	ACNNNNNCTCC	2 cut(s)	979, 1009
Bsc4I	CCNNNNNNNGG	3 cut(s)	92, 642, 1044
Bse1I	ACTGG	1 cut(s)	451
Bse3DI	GCAATG	1 cut(s)	295
BseBI	CCWGG	1 cut(s)	768
BseDI	CCNNGG	4 cut(s)	502, 928, 1043, 1078
BseGI	GGATG	1 cut(s)	1034
BseLI	CCNNNNNNNGG	3 cut(s)	92, 642, 1044
BseMI	GCAATG	1 cut(s)	295
BseMII	CTCAG	2 cut(s)	588, 915
BseNI	ACTGG	1 cut(s)	451
BseRI	GAGGAG	1 cut(s)	618
BseXI	GCAGC	1 cut(s)	251
BseYI	CCCAGC	1 cut(s)	980
Bsh1236I	CGCG	1 cut(s)	993
BshFI	GGCC	5 cut(s)	294, 424, 766, 867, 877
BsiHKAI	GWGCWC	1 cut(s)	169
BsiHKCI	CYCGRG	1 cut(s)	1043
BsiSI	CCGG	3 cut(s)	873, 892, 1044
BslFI	GGGAC	2 cut(s)	470, 1094
BslI	CCNNNNNNNGG	3 cut(s)	92, 642, 1044
BsmAI	GTCTC	2 cut(s)	502, 593
BsmFI	GGGAC	2 cut(s)	470, 1094
BsnI	GGCC	5 cut(s)	294, 424, 766, 867, 877
Bso31I	GGTCTC	1 cut(s)	593
BsoBI	CYCGRG	1 cut(s)	1043
Bsp1286I	GDGCHC	1 cut(s)	169
Bsp143I	GATC	5 cut(s)	33, 121, 211, 344, 941
Bsp19I	CCATGG	2 cut(s)	928, 1078
BspACI	CCGC	1 cut(s)	993
BspANI	GGCC	5 cut(s)	294, 424, 766, 867, 877
BspCNI	CTCAG	2 cut(s)	587, 914
BspFNI	CGCG	1 cut(s)	993
BspHI	TCATGA	1 cut(s)	118
BspLI	GGNNCC	2 cut(s)	634, 823
BspPI	GGATC	3 cut(s)	206, 352, 949
BspTI	CTTAAG	1 cut(s)	727
BspTNI	GGTCTC	1 cut(s)	593
BsrDI	GCAATG	1 cut(s)	295
BsrI	ACTGG	1 cut(s)	451
BssECI	CCNNGG	4 cut(s)	502, 928, 1043, 1078
BssMI	GATC	5 cut(s)	33, 121, 211, 344, 941
BssSI	CACGAG	2 cut(s)	282, 1120
BssT1I	CCWWGG	3 cut(s)	502, 928, 1078
Bst2BI	CACGAG	2 cut(s)	282, 1120
Bst2UI	CCWGG	1 cut(s)	768
Bst4CI	ACNGT	4 cut(s)	112, 533, 697, 977
Bst6I	CTCTTC	1 cut(s)	769
BstAFI	CTTAAG	1 cut(s)	727
BstBAI	YACGTR	1 cut(s)	752
BstC8I	GCNNGC	2 cut(s)	431, 652
BstDEI	CTNAG	2 cut(s)	574, 901
BstDSI	CCRYGG	2 cut(s)	928, 1078
BstF5I	GGATG	1 cut(s)	1034
BstFNI	CGCG	1 cut(s)	993
BstH2I	RGCGCY	1 cut(s)	282
BstHHI	GCGC	2 cut(s)	281, 993
BstKTI	GATC	5 cut(s)	36, 124, 214, 347, 944
BstMAI	GTCTC	2 cut(s)	502, 593
BstMBI	GATC	5 cut(s)	33, 121, 211, 344, 941
BstMWI	GCNNNNNNNGC	4 cut(s)	285, 332, 430, 1094
BstNI	CCWGG	1 cut(s)	768
BstSCI	CCNGG	4 cut(s)	766, 872, 1042, 1043
BstSNI	TACGTA	1 cut(s)	752
BstUI	CGCG	1 cut(s)	993
BstV1I	GCAGC	1 cut(s)	251
BstV2I	GAAGAC	2 cut(s)	708, 1058
BstX2I	RGATCY	1 cut(s)	941
BstYI	RGATCY	1 cut(s)	941
BsuRI	GGCC	5 cut(s)	294, 424, 766, 867, 877
BtgI	CCRYGG	2 cut(s)	928, 1078
BtrI	CACGTC	1 cut(s)	706
BtsCI	GGATG	1 cut(s)	1034
BtsIMutI	CAGTG	4 cut(s)	268, 458, 604, 702
Cac8I	GCNNGC	2 cut(s)	431, 652
CciI	TCATGA	1 cut(s)	118
CfoI	GCGC	2 cut(s)	281, 993
Cfr13I	GGNCC	3 cut(s)	422, 822, 875
Cfr9I	CCCGGG	1 cut(s)	1043
Csp6I	GTAC	3 cut(s)	905, 925, 1083
CviAII	CATG	9 cut(s)	75, 119, 299, 327, 540, 762, 929, 1079, 1113
CviQI	GTAC	3 cut(s)	905, 925, 1083
DdeI	CTNAG	2 cut(s)	574, 901
DpnI	GATC	5 cut(s)	35, 123, 213, 346, 943
DpnII	GATC	5 cut(s)	33, 121, 211, 344, 941
DraI	TTTAAA	1 cut(s)	418
EaeI	YGGCCR	2 cut(s)	292, 764
Eam1104I	CTCTTC	1 cut(s)	769
EarI	CTCTTC	1 cut(s)	769
Ecl136II	GAGCTC	1 cut(s)	167
Eco105I	TACGTA	1 cut(s)	752
Eco130I	CCWWGG	3 cut(s)	502, 928, 1078
Eco147I	AGGCCT	1 cut(s)	867
Eco24I	GRGCYC	1 cut(s)	169
Eco31I	GGTCTC	1 cut(s)	593
Eco47I	GGWCC	1 cut(s)	822
Eco53kI	GAGCTC	1 cut(s)	167
Eco88I	CYCGRG	1 cut(s)	1043
EcoICRI	GAGCTC	1 cut(s)	167
EcoO109I	RGGNCCY	1 cut(s)	422
EcoRII	CCWGG	1 cut(s)	766
EcoT14I	CCWWGG	3 cut(s)	502, 928, 1078
EcoT38I	GRGCYC	1 cut(s)	169
ErhI	CCWWGG	3 cut(s)	502, 928, 1078
FaeI	CATG	9 cut(s)	78, 122, 302, 330, 543, 765, 932, 1082, 1116
FalI	AAGNNNNNCTT	2 cut(s)	349, 381
FaqI	GGGAC	2 cut(s)	470, 1094
FatI	CATG	9 cut(s)	74, 118, 298, 326, 539, 761, 928, 1078, 1112
FauNDI	CATATG	1 cut(s)	799
FbaI	TGATCA	1 cut(s)	121
FblI	GTMKAC	1 cut(s)	82
Fnu4HI	GCNGC	1 cut(s)	240
FokI	GGATG	1 cut(s)	1021
FriOI	GRGCYC	1 cut(s)	169
Fsp4HI	GCNGC	1 cut(s)	240
FspBI	CTAG	4 cut(s)	69, 512, 611, 786
GlaI	GCGC	2 cut(s)	280, 992
GluI	GCNGC	1 cut(s)	240
GsaI	CCCAGC	1 cut(s)	984
HaeII	RGCGCY	1 cut(s)	282
HaeIII	GGCC	5 cut(s)	294, 424, 766, 867, 877
HapII	CCGG	3 cut(s)	873, 892, 1044
HhaI	GCGC	2 cut(s)	281, 993
Hin1II	CATG	9 cut(s)	78, 122, 302, 330, 543, 765, 932, 1082, 1116
Hin6I	GCGC	2 cut(s)	279, 991
HinP1I	GCGC	2 cut(s)	279, 991
HindIII	AAGCTT	1 cut(s)	648
HinfI	GANTC	3 cut(s)	305, 545, 807
HpaII	CCGG	3 cut(s)	873, 892, 1044
HphI	GGTGA	1 cut(s)	57
Hpy166II	GTNNAC	2 cut(s)	83, 709
Hpy188I	TCNGA	3 cut(s)	550, 577, 812
Hpy188III	TCNNGA	4 cut(s)	31, 119, 757, 1122
Hpy8I	GTNNAC	2 cut(s)	83, 709
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	4 cut(s)	72, 375, 452, 1049
HpyCH4III	ACNGT	4 cut(s)	112, 533, 697, 977
HpyCH4IV	ACGT	6 cut(s)	127, 480, 705, 711, 751, 923
HpyCH4V	TGCA	5 cut(s)	42, 429, 518, 723, 1068
HpyF10VI	GCNNNNNNNGC	4 cut(s)	285, 332, 430, 1094
HpyF3I	CTNAG	2 cut(s)	574, 901
HpySE526I	ACGT	6 cut(s)	127, 480, 705, 711, 751, 923
Hsp92II	CATG	9 cut(s)	78, 122, 302, 330, 543, 765, 932, 1082, 1116
HspAI	GCGC	2 cut(s)	279, 991
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	5 cut(s)	33, 121, 211, 344, 941
LmnI	GCTCC	2 cut(s)	504, 683
Lsp1109I	GCAGC	1 cut(s)	251
MaeI	CTAG	4 cut(s)	69, 512, 611, 786
MaeII	ACGT	6 cut(s)	127, 480, 705, 711, 751, 923
MaeIII	GTNAC	1 cut(s)	919
MalI	GATC	5 cut(s)	35, 123, 213, 346, 943
MboI	GATC	5 cut(s)	33, 121, 211, 344, 941
MboII	GAAGA	4 cut(s)	713, 786, 936, 1063
MfeI	CAATTG	1 cut(s)	637
MflI	RGATCY	1 cut(s)	941
MhlI	GDGCHC	1 cut(s)	169
MlsI	TGGCCA	2 cut(s)	294, 766
MluCI	AATT	9 cut(s)	21, 88, 271, 375, 491, 618, 637, 718, 967
MluNI	TGGCCA	2 cut(s)	294, 766
MlyI	GAGTC	1 cut(s)	554
MmeI	TCCRAC	1 cut(s)	835
Mox20I	TGGCCA	2 cut(s)	294, 766
MroXI	GAANNNNTTC	2 cut(s)	364, 441
MscI	TGGCCA	2 cut(s)	294, 766
MseI	TTAA	4 cut(s)	401, 417, 489, 728
MslI	CAYNNNNRTG	2 cut(s)	300, 1010
Msp20I	TGGCCA	2 cut(s)	294, 766
MspCI	CTTAAG	1 cut(s)	727
MspI	CCGG	3 cut(s)	873, 892, 1044
MspR9I	CCNGG	4 cut(s)	768, 874, 1044, 1045
MunI	CAATTG	1 cut(s)	637
MvaI	CCWGG	1 cut(s)	768
MvnI	CGCG	1 cut(s)	993
MwoI	GCNNNNNNNGC	4 cut(s)	285, 332, 430, 1094
NciI	CCSGG	3 cut(s)	874, 1044, 1045
NcoI	CCATGG	2 cut(s)	928, 1078
NdeI	CATATG	1 cut(s)	799
NdeII	GATC	5 cut(s)	33, 121, 211, 344, 941
NlaIII	CATG	9 cut(s)	78, 122, 302, 330, 543, 765, 932, 1082, 1116
NlaIV	GGNNCC	2 cut(s)	634, 823
NmuCI	GTSAC	1 cut(s)	919
PagI	TCATGA	1 cut(s)	118
PceI	AGGCCT	1 cut(s)	867
PdmI	GAANNNNTTC	2 cut(s)	364, 441
PfeI	GAWTC	2 cut(s)	305, 807
PflMI	CCANNNNNTGG	1 cut(s)	642
PkrI	GCNGC	1 cut(s)	241
PleI	GAGTC	1 cut(s)	553
PpsI	GAGTC	1 cut(s)	553
Ppu21I	YACGTR	1 cut(s)	752
PsiI	TTATAA	1 cut(s)	528
Psp124BI	GAGCTC	1 cut(s)	169
Psp1406I	AACGTT	1 cut(s)	127
Psp6I	CCWGG	1 cut(s)	766
PspFI	CCCAGC	1 cut(s)	980
PspGI	CCWGG	1 cut(s)	766
PspN4I	GGNNCC	2 cut(s)	634, 823
PspPI	GGNCC	3 cut(s)	422, 822, 875
PsuI	RGATCY	1 cut(s)	941
RsaI	GTAC	3 cut(s)	906, 926, 1084
RsaNI	GTAC	3 cut(s)	905, 925, 1083
RseI	CAYNNNNRTG	2 cut(s)	300, 1010
SacI	GAGCTC	1 cut(s)	169
SaqAI	TTAA	4 cut(s)	401, 417, 489, 728
SatI	GCNGC	1 cut(s)	240
Sau3AI	GATC	5 cut(s)	33, 121, 211, 344, 941
Sau96I	GGNCC	3 cut(s)	422, 822, 875
SchI	GAGTC	1 cut(s)	554
ScrFI	CCNGG	4 cut(s)	768, 874, 1044, 1045
SduI	GDGCHC	1 cut(s)	169
SinI	GGWCC	1 cut(s)	822
SmaI	CCCGGG	1 cut(s)	1045
SmiMI	CAYNNNNRTG	2 cut(s)	300, 1010
SmlI	CTYRAG	1 cut(s)	727
SmoI	CTYRAG	1 cut(s)	727
SnaBI	TACGTA	1 cut(s)	752
SpeI	ACTAGT	1 cut(s)	511
Sse9I	AATT	9 cut(s)	21, 88, 271, 375, 491, 618, 637, 718, 967
SseBI	AGGCCT	1 cut(s)	867
SsiI	CCGC	1 cut(s)	993
SspI	AATATT	2 cut(s)	224, 471
SspMI	CTAG	4 cut(s)	69, 512, 611, 786
SstI	GAGCTC	1 cut(s)	169
StuI	AGGCCT	1 cut(s)	867
StyD4I	CCNGG	4 cut(s)	766, 872, 1042, 1043
StyI	CCWWGG	3 cut(s)	502, 928, 1078
TaaI	ACNGT	4 cut(s)	112, 533, 697, 977
TaiI	ACGT	6 cut(s)	130, 483, 708, 714, 754, 926
TaqI	TCGA	2 cut(s)	163, 858
TasI	AATT	9 cut(s)	21, 88, 271, 375, 491, 618, 637, 718, 967
TatI	WGTACW	1 cut(s)	904
TfiI	GAWTC	2 cut(s)	305, 807
Tru1I	TTAA	4 cut(s)	401, 417, 489, 728
Tru9I	TTAA	4 cut(s)	401, 417, 489, 728
TscAI	CASTG	4 cut(s)	268, 458, 604, 702
TseFI	GTSAC	1 cut(s)	919
TseI	GCWGC	1 cut(s)	239
Tsp45I	GTSAC	1 cut(s)	919
TspDTI	ATGAA	4 cut(s)	284, 369, 434, 1023
TspMI	CCCGGG	1 cut(s)	1043
TspRI	CASTG	4 cut(s)	268, 458, 604, 702
Van91I	CCANNNNNTGG	1 cut(s)	642
Vha464I	CTTAAG	1 cut(s)	727
VpaK11BI	GGWCC	1 cut(s)	822
XapI	RAATTY	1 cut(s)	271
XmaI	CCCGGG	1 cut(s)	1043
XmiI	GTMKAC	1 cut(s)	82
XmnI	GAANNNNTTC	2 cut(s)	364, 441
XspI	CTAG	4 cut(s)	69, 512, 611, 786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.