Rh1BG080100

Glycosyl hydrolases family 28

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0002703
Physical Location & Seq
Reverse (-)
12515499 .. 12517868
2370 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG080100.1

Sequence Viewer

Length: 1431 bp
ATGGAGGGTCGAATACTTGCTACGATCTTTTTGTTCATGATCATTATGGTTGCTTCACCTTCACCAAGTTCATGTGCCAGACTTAATGGTTTTCCCACAACATATACTTTAAGAGACGATGGTGCCATTGGTTATTATGGTGATCAAGTTGCTGCTGCGACATCAAATTCATTTCATGATAATGAGTATGGTGATGTTTTTGCAACCCCAAATACATTCAAAGAGTATTATCGTCCTCTTGCAAATCGCCAAACCGATGATGATTTACAAGCATTCCCAGATGCATGGAGATCACTTGCAAAAAGCGAATTCAATGTGATGAATTATGGCGCTGTTGGGAATGGCCAAGTTGATGATACACAAGCCTTTCTAAAAGCATGGGGAGATGTTTGTGGATCCACTCAAGGCATCCCTACACTTATTATACCAAAGGGCAACACTTTCTTGCTCAATTCTGTGGAGTTTAAAGGGCCTTGCAGGGCTGCAAGTGTAAATTTCCAGCTAAGTGGGAACATTGTTGCACCAAATAATATAAATGCTTGGAAAGTCAAGGACAAATGGATTCAGTTTGATGATGTTCAAGGGCTGATAATCAATGGAGGAGGTCAAATTGATGGTCAAGGTGATGTTTGGTGGAAAGTTTGCGACAATTCAAATTGCCAACGACCAACATTATCTGTTCTCCATATTTACAAGTGTGATGGTCTCCGCTTGAGTGATATTACACATATTAATAGTCCGAGAAACCATATATTCATCATGGGCAGCAATGGCGTTCAAATTTCAGATATCCTTATTAGGGCTCCTGATGAAAGTCCAAACACTGATGGAATTAAAATCTCTAGATCAACCAATATTAACATTCACAATTCTTTTATAGGCACTGGTGACGACTGTATTGCAATCATTTCTGGTTCATCTCGTATCAACATTACTAATGTTATGTGTGGTCCAGGCCATGGTATAAGTGTTGGAAGTCTTGGTAAGGAAGGTGCTTATAACACAGTGGAAGATGTGCAAGTGAGAAACTGCACCCTGAAGGGAACAGAAAATGGAGCAAGAATCAAGACATGGCAAGGCGGGTCAGGGTATGCTAGGAACATCAGTTTTGAGGATATCATAATTCAAGCAGTCAAGAACCCCATCATTATAGACCAGAAGTATATTGATAAGAGCATTGCTGGAACTGGAACTCAAGCAAGCCAAGGAAGTGCTGTAAAAGTGAGCGATGTGACATTCCGTAACATTCGGGGATCTGTTGCTGGGGAAACAGCCATTACCTTGGACTGTGACGATCAAATTGGTTGCAAAAACATTGTAATGGATAACATAGACTTAACTTCATCTGTTCCTGGCAAGAAGGTTTCTGCCCAGTGCAAGAACGTTCAAGGATTTTCTACTTCATTATCTCCTAGTGTGCCATGCCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

476

Amino Acids

51.31

Weight (kDa)

5.58

Isoelectric Point (pI)

30.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_28 PF00295 135 - 463 1.2e-92 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 999
AccB1I GGYRCC 1 cut(s) 122
AccB7I CCANNNNNTGG 1 cut(s) 959
AciI CCGC 2 cut(s) 709, 1080
AclI AACGTT 1 cut(s) 1383
AclWI GGATC 3 cut(s) 390, 403, 1261
AcoI YGGCCR 1 cut(s) 343
AcsI RAATTY 4 cut(s) 166, 308, 493, 780
AcuI CTGAAG 1 cut(s) 1058
AfiI CCNNNNNNNGG 2 cut(s) 799, 959
AgsI TTSAA 7 cut(s) 220, 313, 581, 654, 779, 1127, 1388
AjnI CCWGG 2 cut(s) 952, 1351
AluBI AGCT 1 cut(s) 502
AluI AGCT 1 cut(s) 502
Alw26I GTCTC 2 cut(s) 108, 710
AlwI GGATC 3 cut(s) 390, 403, 1261
AoxI GGCC 3 cut(s) 343, 470, 955
ApeKI GCWGC 4 cut(s) 152, 155, 482, 765
ApoI RAATTY 4 cut(s) 166, 308, 493, 780
ArsI GACNNNNNNTTYG 2 cut(s) 601, 633
AseI ATTAAT 1 cut(s) 732
AspLEI GCGC 1 cut(s) 332
AspS9I GGNCC 2 cut(s) 470, 950
AsuHPI GGTGA 6 cut(s) 48, 54, 152, 203, 635, 899
AvaII GGWCC 1 cut(s) 950
BalI TGGCCA 1 cut(s) 345
BamHI GGATCC 1 cut(s) 395
BanI GGYRCC 1 cut(s) 122
BanII GRGCYC 1 cut(s) 805
BbvI GCAGC 4 cut(s) 139, 142, 469, 777
BccI CCATC 5 cut(s) 113, 608, 695, 821, 1151
BcgI CGANNNNNNTGC 2 cut(s) 881, 915
BciT130I CCWGG 2 cut(s) 954, 1353
BclI TGATCA 2 cut(s) 39, 142
BcoDI GTCTC 2 cut(s) 108, 710
BfaI CTAG 3 cut(s) 843, 1095, 1413
BfoI RGCGCY 1 cut(s) 333
BisI GCNGC 4 cut(s) 153, 156, 483, 766
BlsI GCNGC 4 cut(s) 154, 157, 484, 767
Bme1390I CCNGG 2 cut(s) 954, 1353
Bme18I GGWCC 1 cut(s) 950
BmgT120I GGNCC 2 cut(s) 470, 950
BmiI GGNNCC 3 cut(s) 124, 397, 804
BmrFI CCNGG 2 cut(s) 954, 1353
BmrI ACTGGG 1 cut(s) 1366
BmsI GCATC 2 cut(s) 271, 417
BmuI ACTGGG 1 cut(s) 1366
BpuEI CTTGAG 3 cut(s) 387, 733, 1179
BsaI GGTCTC 1 cut(s) 710
BsaJI CCNNGG 3 cut(s) 958, 1204, 1281
Bsc4I CCNNNNNNNGG 2 cut(s) 799, 959
Bse1I ACTGG 3 cut(s) 889, 1192, 1372
Bse3DI GCAATG 2 cut(s) 775, 1176
BseBI CCWGG 2 cut(s) 954, 1353
BseDI CCNNGG 3 cut(s) 958, 1204, 1281
BseGI GGATG 1 cut(s) 408
BseLI CCNNNNNNNGG 2 cut(s) 799, 959
BseMI GCAATG 2 cut(s) 775, 1176
BseNI ACTGG 3 cut(s) 889, 1192, 1372
BseRI GAGGAG 1 cut(s) 615
BseXI GCAGC 4 cut(s) 139, 142, 469, 777
BseYI CCCAGC 1 cut(s) 1262
BsgI GTGCAG 1 cut(s) 1015
BshFI GGCC 3 cut(s) 345, 472, 957
BshNI GGYRCC 1 cut(s) 122
BslI CCNNNNNNNGG 2 cut(s) 799, 959
BsmAI GTCTC 2 cut(s) 108, 710
BsmBI CGTCTC 1 cut(s) 108
BsmI GAATGC 1 cut(s) 272
BsnI GGCC 3 cut(s) 345, 472, 957
Bso31I GGTCTC 1 cut(s) 710
Bsp1286I GDGCHC 1 cut(s) 805
Bsp143I GATC 8 cut(s) 24, 39, 142, 290, 395, 845, 1253, 1294
Bsp19I CCATGG 1 cut(s) 958
BspACI CCGC 2 cut(s) 709, 1080
BspANI GGCC 3 cut(s) 345, 472, 957
BspHI TCATGA 2 cut(s) 36, 175
BspLI GGNNCC 3 cut(s) 124, 397, 804
BspPI GGATC 3 cut(s) 390, 403, 1261
BspT107I GGYRCC 1 cut(s) 122
BspTNI GGTCTC 1 cut(s) 710
BsrDI GCAATG 2 cut(s) 775, 1176
BsrI ACTGG 3 cut(s) 889, 1192, 1372
BssECI CCNNGG 3 cut(s) 958, 1204, 1281
BssMI GATC 8 cut(s) 24, 39, 142, 290, 395, 845, 1253, 1294
BssT1I CCWWGG 3 cut(s) 958, 1204, 1281
Bst2UI CCWGG 2 cut(s) 954, 1353
Bst4CI ACNGT 3 cut(s) 896, 1006, 1289
BstC8I GCNNGC 1 cut(s) 1201
BstDEI CTNAG 1 cut(s) 503
BstDSI CCRYGG 1 cut(s) 958
BstF5I GGATG 1 cut(s) 408
BstH2I RGCGCY 1 cut(s) 333
BstHHI GCGC 1 cut(s) 332
BstKTI GATC 8 cut(s) 27, 42, 145, 293, 398, 848, 1256, 1297
BstMAI GTCTC 2 cut(s) 108, 710
BstMBI GATC 8 cut(s) 24, 39, 142, 290, 395, 845, 1253, 1294
BstMWI GCNNNNNNNGC 1 cut(s) 771
BstNI CCWGG 2 cut(s) 954, 1353
BstSCI CCNGG 2 cut(s) 952, 1351
BstV1I GCAGC 4 cut(s) 139, 142, 469, 777
BstX2I RGATCY 2 cut(s) 395, 1253
BstXI CCANNNNNNTGG 3 cut(s) 285, 506, 1282
BstYI RGATCY 2 cut(s) 395, 1253
BsuRI GGCC 3 cut(s) 345, 472, 957
BtgI CCRYGG 1 cut(s) 958
BtgZI GCGATG 1 cut(s) 1242
BtsCI GGATG 1 cut(s) 408
BtsIMutI CAGTG 4 cut(s) 822, 882, 1011, 1379
Cac8I GCNNGC 1 cut(s) 1201
CciI TCATGA 2 cut(s) 36, 175
CfoI GCGC 1 cut(s) 332
Cfr13I GGNCC 2 cut(s) 470, 950
CviAII CATG 9 cut(s) 37, 72, 176, 285, 378, 760, 959, 1071, 1422
DdeI CTNAG 1 cut(s) 503
DpnI GATC 8 cut(s) 26, 41, 144, 292, 397, 847, 1255, 1296
DpnII GATC 8 cut(s) 24, 39, 142, 290, 395, 845, 1253, 1294
DraI TTTAAA 1 cut(s) 466
EaeI YGGCCR 1 cut(s) 343
Eco130I CCWWGG 3 cut(s) 958, 1204, 1281
Eco24I GRGCYC 1 cut(s) 805
Eco31I GGTCTC 1 cut(s) 710
Eco32I GATATC 2 cut(s) 790, 1117
Eco47I GGWCC 1 cut(s) 950
Eco57I CTGAAG 1 cut(s) 1058
EcoO109I RGGNCCY 1 cut(s) 470
EcoRI GAATTC 1 cut(s) 308
EcoRII CCWGG 2 cut(s) 952, 1351
EcoRV GATATC 2 cut(s) 790, 1117
EcoT14I CCWWGG 3 cut(s) 958, 1204, 1281
EcoT22I ATGCAT 1 cut(s) 286
EcoT38I GRGCYC 1 cut(s) 805
ErhI CCWWGG 3 cut(s) 958, 1204, 1281
Esp3I CGTCTC 1 cut(s) 108
FaeI CATG 9 cut(s) 40, 75, 179, 288, 381, 763, 962, 1074, 1425
FatI CATG 9 cut(s) 36, 71, 175, 284, 377, 759, 958, 1070, 1421
FauI CCCGC 1 cut(s) 1073
FbaI TGATCA 2 cut(s) 39, 142
Fnu4HI GCNGC 4 cut(s) 153, 156, 483, 766
FokI GGATG 1 cut(s) 395
FriOI GRGCYC 1 cut(s) 805
Fsp4HI GCNGC 4 cut(s) 153, 156, 483, 766
FspBI CTAG 3 cut(s) 843, 1095, 1413
GlaI GCGC 1 cut(s) 331
GluI GCNGC 4 cut(s) 153, 156, 483, 766
GsaI CCCAGC 1 cut(s) 1266
HaeII RGCGCY 1 cut(s) 333
HaeIII GGCC 3 cut(s) 345, 472, 957
HhaI GCGC 1 cut(s) 332
Hin1II CATG 9 cut(s) 40, 75, 179, 288, 381, 763, 962, 1074, 1425
Hin6I GCGC 1 cut(s) 330
HinP1I GCGC 1 cut(s) 330
HinfI GANTC 2 cut(s) 562, 1062
HphI GGTGA 6 cut(s) 48, 54, 152, 203, 635, 899
Hpy188I TCNGA 2 cut(s) 741, 787
Hpy188III TCNNGA 6 cut(s) 37, 176, 806, 843, 1066, 1135
HpyAV CCTTC 4 cut(s) 69, 983, 1033, 1354
HpyCH4III ACNGT 3 cut(s) 896, 1006, 1289
HpyCH4IV ACGT 1 cut(s) 1383
HpyF10VI GCNNNNNNNGC 1 cut(s) 771
HpyF3I CTNAG 1 cut(s) 503
HpySE526I ACGT 1 cut(s) 1383
Hsp92II CATG 9 cut(s) 40, 75, 179, 288, 381, 763, 962, 1074, 1425
HspAI GCGC 1 cut(s) 330
Ksp22I TGATCA 2 cut(s) 39, 142
Kzo9I GATC 8 cut(s) 24, 39, 142, 290, 395, 845, 1253, 1294
LmnI GCTCC 2 cut(s) 808, 1055
Lsp1109I GCAGC 4 cut(s) 139, 142, 469, 777
LweI GCATC 2 cut(s) 271, 417
MaeI CTAG 3 cut(s) 843, 1095, 1413
MaeII ACGT 1 cut(s) 1383
MaeIII GTNAC 4 cut(s) 887, 1231, 1241, 1289
MalI GATC 8 cut(s) 26, 41, 144, 292, 397, 847, 1255, 1296
MboI GATC 8 cut(s) 24, 39, 142, 290, 395, 845, 1253, 1294
MboII GAAGA 1 cut(s) 1022
MflI RGATCY 2 cut(s) 395, 1253
MhlI GDGCHC 1 cut(s) 805
MlsI TGGCCA 1 cut(s) 345
MluNI TGGCCA 1 cut(s) 345
MmeI TCCRAC 1 cut(s) 952
MnlI CCTC 4 cut(s) 246, 593, 596, 1105
Mox20I TGGCCA 1 cut(s) 345
Mph1103I ATGCAT 1 cut(s) 286
MscI TGGCCA 1 cut(s) 345
MseI TTAA 8 cut(s) 84, 110, 465, 732, 834, 858, 1337, 1429
MslI CAYNNNNRTG 2 cut(s) 180, 1319
Msp20I TGGCCA 1 cut(s) 345
MspR9I CCNGG 2 cut(s) 954, 1353
Mva1269I GAATGC 1 cut(s) 272
MvaI CCWGG 2 cut(s) 954, 1353
MwoI GCNNNNNNNGC 1 cut(s) 771
NcoI CCATGG 1 cut(s) 958
NdeII GATC 8 cut(s) 24, 39, 142, 290, 395, 845, 1253, 1294
NlaIII CATG 9 cut(s) 40, 75, 179, 288, 381, 763, 962, 1074, 1425
NlaIV GGNNCC 3 cut(s) 124, 397, 804
NmuCI GTSAC 3 cut(s) 887, 1231, 1289
NsiI ATGCAT 1 cut(s) 286
PagI TCATGA 2 cut(s) 36, 175
PctI GAATGC 1 cut(s) 272
PfeI GAWTC 2 cut(s) 562, 1062
PflMI CCANNNNNTGG 1 cut(s) 959
PkrI GCNGC 4 cut(s) 154, 157, 484, 767
PshBI ATTAAT 1 cut(s) 732
PsiI TTATAA 1 cut(s) 999
Psp1406I AACGTT 1 cut(s) 1383
Psp6I CCWGG 2 cut(s) 952, 1351
PspFI CCCAGC 1 cut(s) 1262
PspGI CCWGG 2 cut(s) 952, 1351
PspN4I GGNNCC 3 cut(s) 124, 397, 804
PspPI GGNCC 2 cut(s) 470, 950
PsuI RGATCY 2 cut(s) 395, 1253
RseI CAYNNNNRTG 2 cut(s) 180, 1319
SaqAI TTAA 8 cut(s) 84, 110, 465, 732, 834, 858, 1337, 1429
SatI GCNGC 4 cut(s) 153, 156, 483, 766
Sau3AI GATC 8 cut(s) 24, 39, 142, 290, 395, 845, 1253, 1294
Sau96I GGNCC 2 cut(s) 470, 950
ScrFI CCNGG 2 cut(s) 954, 1353
SduI GDGCHC 1 cut(s) 805
SetI ASST 8 cut(s) 61, 504, 607, 625, 994, 1283, 1365, 1386
SfaNI GCATC 2 cut(s) 271, 417
SinI GGWCC 1 cut(s) 950
SmiMI CAYNNNNRTG 2 cut(s) 180, 1319
SmlI CTYRAG 3 cut(s) 402, 712, 1194
SmoI CTYRAG 3 cut(s) 402, 712, 1194
SsiI CCGC 2 cut(s) 709, 1080
SspI AATATT 1 cut(s) 856
SspMI CTAG 3 cut(s) 843, 1095, 1413
StyD4I CCNGG 2 cut(s) 952, 1351
StyI CCWWGG 3 cut(s) 958, 1204, 1281
TaaI ACNGT 3 cut(s) 896, 1006, 1289
TaiI ACGT 1 cut(s) 1386
TaqI TCGA 1 cut(s) 10
TfiI GAWTC 2 cut(s) 562, 1062
Tru1I TTAA 8 cut(s) 84, 110, 465, 732, 834, 858, 1337, 1429
Tru9I TTAA 8 cut(s) 84, 110, 465, 732, 834, 858, 1337, 1429
TscAI CASTG 4 cut(s) 829, 889, 1011, 1379
TseFI GTSAC 3 cut(s) 887, 1231, 1289
TseI GCWGC 4 cut(s) 152, 155, 482, 765
Tsp45I GTSAC 3 cut(s) 887, 1231, 1289
TspGWI ACGGA 1 cut(s) 1229
TspRI CASTG 4 cut(s) 829, 889, 1011, 1379
Van91I CCANNNNNTGG 1 cut(s) 959
VpaK11BI GGWCC 1 cut(s) 950
VspI ATTAAT 1 cut(s) 732
XapI RAATTY 4 cut(s) 166, 308, 493, 780
XbaI TCTAGA 1 cut(s) 842
XspI CTAG 3 cut(s) 843, 1095, 1413
Zsp2I ATGCAT 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.