Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0002049

Physical Location & Seq

Genomic Coordinates Forward (+)

1847164 .. 1848836

Gene Structure 1673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g02230.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGATAGCGAGACAGATCAGTAAACCTCCGGTAGTACCCGTTTGCTGTCAACTTCCCCTGCCTCAACTTAGTGAATTCCTGCTTTTTGCGGTCAATATACTCAGGAGGCACAAACCTTCTCTTGAACAACTCTCTGAATACCTTCCAATCAATCCTTTCCAATCCTTACCCAAAAACCACGATGTCGTCTTCTCAATATGTTCTAGCCACCGCTCCACTCCCTCAAAGCCCTCGTGGCCCTCGAATTTATCCAACTTCAGATTGTACATAGTCTCCAAAGGAGTCCTCTGGGGAGGCTACATCGGGGAAACTAGGCTCAGCAGAGCGACGTTGTTCCTGACGAGGCGTATAGGACTGCCAAACCTAGTCTTTGATACCAAACTAACAAACCCCAATCGAGATCAGGGCATGCTGGCCGTCACGTGGAAAAAAAAAAACCTAGCTATACATAAGGTAATAACATACATGTGCAAGCGTAAATGTGATAACAAAAGTTCAGAAAACATACCCAAATGTGGTCCTACATTGGTGATAACCTGTCAGATAAGCCGGGAAAATCCTCTGGGGAGCCACCAAAACGTGAGTGGGCAAAAACAAAGCTTTTCAAAAACCATTTCCATAAACAAAGTTCTAACCCCTTGCCATAAAACCTGTATACTTCCCAGAAAATATAATATACATATGCATATAAATCATGCTCAGAAATATGCCATGCCAAATCCGGAGTCACCTAACGTGACCTGTACGGCTGAATCTAGAGCTCAAATCTCCAACTCACTAACTATACCTGCACACGAGTCGGAACCACCTAAAGTGGTCTGTACGACAGGACTGGGCTGGGTGAATTTACGTAGAGACGATCAGCAAGGAGCTTTCACCAAATTGGGTAACCTATGCATCTCTTTTAGGGAGGAAGGACTAGAGTTAAATGTTATTCTCTATAACAACCTTTTAGCTATGTGGGCTGATGTTGGATACATTGATGAGGCTATTGAGATTTTTGAAGTAATGAAGAGTTCTAAAACACTAAGCGGGAAAGTCATAGAGGTAGAAGCAACATTGAATGAGATCTTGGAAGCTAATTTTGAGCCAAATATTTTGATTTTGACGTCACCCTTAAATGCTAGGTTGACTACACCCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006417 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031425 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

382

Amino Acids

42.75

Weight (kDa)

9.27

Isoelectric Point (pI)

58.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002049)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g00950 pycom01g02230 pycom01g02530 pycom01g03240 pycom01g03780 pycom01g03960 pycom01g10590 pycom02g05860 pycom02g18140 pycom02g18750 pycom02g25820 pycom03g06900 pycom03g14140 pycom04g13490 pycom05g06800 pycom05g08060 pycom05g11020 pycom06g01480 pycom07g11130 pycom08g10990 pycom08g12630 pycom08g15990 pycom09g16180 pycom10g06310 pycom11g05150 pycom11g21930 pycom12g00360 pycom12g03890 pycom12g08360 pycom13g22190 pycom13g23920 pycom13g25930 pycom13g26530 pycom13g27310 pycom13g27750 pycom13g28850 pycom15g23410 pycom15g30270 pycom15g35580 pycom16g01960 pycom17g21240 pycom420g00260 pycom808g00230
rosa_chinensis	RchiOBHm_Chr2g0089581
rosa_roxburghii	Rroxscaffold_5G00351150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1112
Acc36I	ACCTGC	1 cut(s)	796
AccBSI	CCGCTC	1 cut(s)	213
AccI	GTMKAC	1 cut(s)	655
AccIII	TCCGGA	1 cut(s)	721
AciI	CCGC	3 cut(s)	89, 211, 1032
AcoI	YGGCCR	1 cut(s)	414
AcsI	RAATTY	3 cut(s)	74, 244, 844
AcuI	CTGAAG	1 cut(s)	241
AcvI	CACGTG	1 cut(s)	423
AcyI	GRCGYC	1 cut(s)	1109
AfaI	GTAC	4 cut(s)	36, 266, 745, 823
AfiI	CCNNNNNNNGG	2 cut(s)	423, 515
AflIII	ACRYGT	1 cut(s)	465
AgsI	TTSAA	4 cut(s)	125, 606, 1004, 1063
AjuI	GAANNNNNNNTTGG	2 cut(s)	1055, 1087
AluBI	AGCT	6 cut(s)	443, 600, 761, 872, 956, 1079
AluI	AGCT	6 cut(s)	443, 600, 761, 872, 956, 1079
Alw21I	GWGCWC	1 cut(s)	763
Alw26I	GTCTC	3 cut(s)	4, 277, 849
Aor13HI	TCCGGA	1 cut(s)	721
AoxI	GGCC	2 cut(s)	236, 414
ApoI	RAATTY	3 cut(s)	74, 244, 844
ArsI	GACNNNNNNTTYG	2 cut(s)	710, 742
Asp700I	GAANNNNTTC	1 cut(s)	141
AspS9I	GGNCC	2 cut(s)	237, 518
AsuC2I	CCSGG	1 cut(s)	551
AsuHPI	GGTGA	5 cut(s)	541, 720, 853, 868, 1104
AvaII	GGWCC	1 cut(s)	518
BanII	GRGCYC	1 cut(s)	763
BauI	CACGAG	2 cut(s)	232, 794
BbrPI	CACGTG	1 cut(s)	423
BbsI	GAAGAC	1 cut(s)	181
Bbv12I	GWGCWC	1 cut(s)	763
BceAI	ACGGC	2 cut(s)	401, 762
BcgI	CGANNNNNNTGC	2 cut(s)	780, 814
BciVI	GTATCC	1 cut(s)	968
BcnI	CCSGG	1 cut(s)	551
BcoDI	GTCTC	3 cut(s)	4, 277, 849
BfaI	CTAG	7 cut(s)	204, 312, 365, 440, 756, 920, 1125
BfuAI	ACCTGC	1 cut(s)	796
BfuI	GTATCC	1 cut(s)	968
BglI	GCCNNNNNGGC	1 cut(s)	235
BglII	AGATCT	1 cut(s)	1068
BlpI	GCTNAGC	1 cut(s)	317
Bme1390I	CCNGG	1 cut(s)	551
Bme18I	GGWCC	1 cut(s)	518
BmgT120I	GGNCC	2 cut(s)	237, 518
BmiI	GGNNCC	2 cut(s)	569, 804
BmrFI	CCNGG	1 cut(s)	551
BmrI	ACTGGG	1 cut(s)	842
BmsI	GCATC	1 cut(s)	906
BmuI	ACTGGG	1 cut(s)	842
BpiI	GAAGAC	1 cut(s)	181
Bpu1102I	GCTNAGC	1 cut(s)	317
BpuMI	CCSGG	1 cut(s)	551
BsaAI	YACGTR	2 cut(s)	423, 851
BsaHI	GRCGYC	1 cut(s)	1109
BsaWI	WCCGGW	2 cut(s)	28, 721
BsaXI	ACNNNNNCTCC	2 cut(s)	257, 287
Bsc4I	CCNNNNNNNGG	2 cut(s)	423, 515
Bse1I	ACTGG	1 cut(s)	837
BseAI	TCCGGA	1 cut(s)	721
BseLI	CCNNNNNNNGG	2 cut(s)	423, 515
BseMII	CTCAG	3 cut(s)	115, 331, 713
BseNI	ACTGG	1 cut(s)	837
BseYI	CCCAGC	1 cut(s)	837
BsgI	GTGCAG	1 cut(s)	774
BshFI	GGCC	2 cut(s)	238, 416
BsiHKAI	GWGCWC	1 cut(s)	763
BsiSI	CCGG	3 cut(s)	29, 550, 722
BslI	CCNNNNNNNGG	2 cut(s)	423, 515
BsmAI	GTCTC	3 cut(s)	4, 277, 849
BsmBI	CGTCTC	1 cut(s)	849
BsnI	GGCC	2 cut(s)	238, 416
Bsp1286I	GDGCHC	1 cut(s)	763
Bsp13I	TCCGGA	1 cut(s)	721
Bsp1407I	TGTACA	1 cut(s)	264
Bsp143I	GATC	4 cut(s)	15, 400, 859, 1068
Bsp1720I	GCTNAGC	1 cut(s)	317
BspACI	CCGC	3 cut(s)	89, 211, 1032
BspANI	GGCC	2 cut(s)	238, 416
BspCNI	CTCAG	3 cut(s)	114, 330, 712
BspEI	TCCGGA	1 cut(s)	721
BspLI	GGNNCC	2 cut(s)	569, 804
BspMI	ACCTGC	1 cut(s)	796
BsrBI	CCGCTC	1 cut(s)	213
BsrGI	TGTACA	1 cut(s)	264
BsrI	ACTGG	1 cut(s)	837
BssMI	GATC	4 cut(s)	15, 400, 859, 1068
BssNAI	GTATAC	1 cut(s)	656
BssNI	GRCGYC	1 cut(s)	1109
BssSI	CACGAG	2 cut(s)	232, 794
Bst1107I	GTATAC	1 cut(s)	656
Bst2BI	CACGAG	2 cut(s)	232, 794
Bst6I	CTCTTC	1 cut(s)	1007
BstACI	GRCGYC	1 cut(s)	1109
BstAUI	TGTACA	1 cut(s)	264
BstBAI	YACGTR	2 cut(s)	423, 851
BstC8I	GCNNGC	3 cut(s)	410, 414, 473
BstDEI	CTNAG	5 cut(s)	68, 101, 317, 699, 1028
BstEII	GGTNACC	1 cut(s)	887
BstKTI	GATC	4 cut(s)	18, 403, 862, 1071
BstMAI	GTCTC	3 cut(s)	4, 277, 849
BstMBI	GATC	4 cut(s)	15, 400, 859, 1068
BstMWI	GCNNNNNNNGC	2 cut(s)	235, 962
BstNSI	RCATGY	2 cut(s)	412, 469
BstPI	GGTNACC	1 cut(s)	887
BstSCI	CCNGG	1 cut(s)	549
BstSNI	TACGTA	1 cut(s)	851
BstV2I	GAAGAC	1 cut(s)	181
BstX2I	RGATCY	1 cut(s)	1068
BstYI	RGATCY	1 cut(s)	1068
BstZ17I	GTATAC	1 cut(s)	656
BsuI	GTATCC	1 cut(s)	968
BsuRI	GGCC	2 cut(s)	238, 416
BveI	ACCTGC	1 cut(s)	796
Cac8I	GCNNGC	3 cut(s)	410, 414, 473
Cfr13I	GGNCC	2 cut(s)	237, 518
Csp6I	GTAC	4 cut(s)	35, 265, 744, 822
CviAII	CATG	4 cut(s)	409, 466, 695, 712
CviQI	GTAC	4 cut(s)	35, 265, 744, 822
DdeI	CTNAG	5 cut(s)	68, 101, 317, 699, 1028
DpnI	GATC	4 cut(s)	17, 402, 861, 1070
DpnII	GATC	4 cut(s)	15, 400, 859, 1068
EaeI	YGGCCR	1 cut(s)	414
Eam1104I	CTCTTC	1 cut(s)	1007
EarI	CTCTTC	1 cut(s)	1007
Ecl136II	GAGCTC	1 cut(s)	761
Eco105I	TACGTA	1 cut(s)	851
Eco24I	GRGCYC	1 cut(s)	763
Eco47I	GGWCC	1 cut(s)	518
Eco53kI	GAGCTC	1 cut(s)	761
Eco57I	CTGAAG	1 cut(s)	241
Eco72I	CACGTG	1 cut(s)	423
Eco91I	GGTNACC	1 cut(s)	887
EcoICRI	GAGCTC	1 cut(s)	761
EcoO65I	GGTNACC	1 cut(s)	887
EcoRI	GAATTC	1 cut(s)	74
EcoT22I	ATGCAT	2 cut(s)	687, 899
EcoT38I	GRGCYC	1 cut(s)	763
Esp3I	CGTCTC	1 cut(s)	849
FaeI	CATG	4 cut(s)	412, 469, 698, 715
FatI	CATG	4 cut(s)	408, 465, 694, 711
FauI	CCCGC	1 cut(s)	1025
FauNDI	CATATG	1 cut(s)	681
FblI	GTMKAC	1 cut(s)	655
FriOI	GRGCYC	1 cut(s)	763
FspBI	CTAG	7 cut(s)	204, 312, 365, 440, 756, 920, 1125
GsaI	CCCAGC	1 cut(s)	841
HaeIII	GGCC	2 cut(s)	238, 416
HapII	CCGG	3 cut(s)	29, 550, 722
Hin1I	GRCGYC	1 cut(s)	1109
Hin1II	CATG	4 cut(s)	412, 469, 698, 715
HincII	GTYRAC	2 cut(s)	50, 1131
HindII	GTYRAC	2 cut(s)	50, 1131
HindIII	AAGCTT	1 cut(s)	598
HinfI	GANTC	4 cut(s)	282, 725, 752, 797
HpaII	CCGG	3 cut(s)	29, 550, 722
HphI	GGTGA	5 cut(s)	541, 720, 853, 868, 1104
Hpy166II	GTNNAC	4 cut(s)	23, 50, 656, 1131
Hpy188I	TCNGA	6 cut(s)	136, 260, 499, 543, 702, 802
Hpy188III	TCNNGA	6 cut(s)	103, 122, 337, 398, 722, 756
Hpy8I	GTNNAC	4 cut(s)	23, 50, 656, 1131
Hpy99I	CGWCG	1 cut(s)	331
HpyAV	CCTTC	3 cut(s)	126, 152, 908
HpyCH4IV	ACGT	6 cut(s)	329, 422, 579, 735, 850, 1109
HpyCH4V	TGCA	4 cut(s)	471, 685, 791, 897
HpyF10VI	GCNNNNNNNGC	2 cut(s)	235, 962
HpyF3I	CTNAG	5 cut(s)	68, 101, 317, 699, 1028
HpySE526I	ACGT	6 cut(s)	329, 422, 579, 735, 850, 1109
Hsp92I	GRCGYC	1 cut(s)	1109
Hsp92II	CATG	4 cut(s)	412, 469, 698, 715
Kpn2I	TCCGGA	1 cut(s)	721
Kzo9I	GATC	4 cut(s)	15, 400, 859, 1068
LmnI	GCTCC	3 cut(s)	218, 567, 869
LweI	GCATC	1 cut(s)	906
MaeI	CTAG	7 cut(s)	204, 312, 365, 440, 756, 920, 1125
MaeII	ACGT	6 cut(s)	329, 422, 579, 735, 850, 1109
MaeIII	GTNAC	5 cut(s)	418, 726, 736, 887, 1110
MalI	GATC	4 cut(s)	17, 402, 861, 1070
MbiI	CCGCTC	1 cut(s)	213
MboI	GATC	4 cut(s)	15, 400, 859, 1068
MboII	GAAGA	2 cut(s)	181, 1024
MflI	RGATCY	1 cut(s)	1068
MhlI	GDGCHC	1 cut(s)	763
MluCI	AATT	5 cut(s)	74, 244, 844, 881, 1081
MlyI	GAGTC	3 cut(s)	291, 734, 806
MmeI	TCCRAC	4 cut(s)	276, 780, 795, 952
Mph1103I	ATGCAT	2 cut(s)	687, 899
MroI	TCCGGA	1 cut(s)	721
MroXI	GAANNNNTTC	1 cut(s)	141
MseI	TTAA	2 cut(s)	926, 1118
MslI	CAYNNNNRTG	1 cut(s)	466
MspI	CCGG	3 cut(s)	29, 550, 722
MspR9I	CCNGG	1 cut(s)	551
MwoI	GCNNNNNNNGC	2 cut(s)	235, 962
NciI	CCSGG	1 cut(s)	551
NdeI	CATATG	1 cut(s)	681
NdeII	GATC	4 cut(s)	15, 400, 859, 1068
NlaIII	CATG	4 cut(s)	412, 469, 698, 715
NlaIV	GGNNCC	2 cut(s)	569, 804
NmuCI	GTSAC	4 cut(s)	418, 726, 736, 1110
NsiI	ATGCAT	2 cut(s)	687, 899
NspI	RCATGY	2 cut(s)	412, 469
PaeI	GCATGC	1 cut(s)	412
PciI	ACATGT	1 cut(s)	465
PcsI	WCGNNNNNNNCGW	1 cut(s)	239
PdmI	GAANNNNTTC	1 cut(s)	141
PfeI	GAWTC	1 cut(s)	752
PleI	GAGTC	3 cut(s)	290, 733, 805
PmaCI	CACGTG	1 cut(s)	423
PmlI	CACGTG	1 cut(s)	423
PpsI	GAGTC	3 cut(s)	290, 733, 805
Ppu21I	YACGTR	2 cut(s)	423, 851
PscI	ACATGT	1 cut(s)	465
Psp124BI	GAGCTC	1 cut(s)	763
PspCI	CACGTG	1 cut(s)	423
PspEI	GGTNACC	1 cut(s)	887
PspFI	CCCAGC	1 cut(s)	837
PspN4I	GGNNCC	2 cut(s)	569, 804
PspPI	GGNCC	2 cut(s)	237, 518
PsuI	RGATCY	1 cut(s)	1068
RsaI	GTAC	4 cut(s)	36, 266, 745, 823
RsaNI	GTAC	4 cut(s)	35, 265, 744, 822
RseI	CAYNNNNRTG	1 cut(s)	466
SacI	GAGCTC	1 cut(s)	763
SaqAI	TTAA	2 cut(s)	926, 1118
Sau3AI	GATC	4 cut(s)	15, 400, 859, 1068
Sau96I	GGNCC	2 cut(s)	237, 518
SchI	GAGTC	3 cut(s)	291, 734, 806
ScrFI	CCNGG	1 cut(s)	551
SduI	GDGCHC	1 cut(s)	763
SfaNI	GCATC	1 cut(s)	906
SinI	GGWCC	1 cut(s)	518
SmiMI	CAYNNNNRTG	1 cut(s)	466
SnaBI	TACGTA	1 cut(s)	851
SphI	GCATGC	1 cut(s)	412
Sse9I	AATT	5 cut(s)	74, 244, 844, 881, 1081
SsiI	CCGC	3 cut(s)	89, 211, 1032
SspI	AATATT	1 cut(s)	1096
SspMI	CTAG	7 cut(s)	204, 312, 365, 440, 756, 920, 1125
SstI	GAGCTC	1 cut(s)	763
StyD4I	CCNGG	1 cut(s)	549
TaiI	ACGT	6 cut(s)	332, 425, 582, 738, 853, 1112
TaqI	TCGA	2 cut(s)	242, 397
TasI	AATT	5 cut(s)	74, 244, 844, 881, 1081
TatI	WGTACW	1 cut(s)	264
TfiI	GAWTC	1 cut(s)	752
Tru1I	TTAA	2 cut(s)	926, 1118
Tru9I	TTAA	2 cut(s)	926, 1118
TseFI	GTSAC	4 cut(s)	418, 726, 736, 1110
Tsp45I	GTSAC	4 cut(s)	418, 726, 736, 1110
TspDTI	ATGAA	1 cut(s)	1025
VpaK11BI	GGWCC	1 cut(s)	518
XapI	RAATTY	3 cut(s)	74, 244, 844
XbaI	TCTAGA	1 cut(s)	755
XceI	RCATGY	2 cut(s)	412, 469
XcmI	CCANNNNNNNNNTGG	1 cut(s)	581
XmiI	GTMKAC	1 cut(s)	655
XmnI	GAANNNNTTC	1 cut(s)	141
XspI	CTAG	7 cut(s)	204, 312, 365, 440, 756, 920, 1125
ZraI	GACGTC	1 cut(s)	1110
Zsp2I	ATGCAT	2 cut(s)	687, 899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.