pycom05g06800

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
9579803 .. 9580051
249 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g06800.1

Sequence Viewer

Length: 249 bp
ATGACCGTAACGAGTCCTGAACGCCGTCTTAGGAACATCATCCCTACTAATCTTCAGCTGATAGTACCCAGACCTCAAGTCTATCTTAGAAAATACACAAGCACCTCTCAGCTGATCAAACAAATCATCGATACGAGGCAATGGATAACGGTTTTTAATCGTCACCCGATTCAATTGTCTGTAGTCGATACACAGCCTCAAAGTCCCATCTTTCTTTTTCACAAACAACACTGGAGCGCCCCAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.77

Weight (kDa)

11.56

Isoelectric Point (pI)

62.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 38
AfaI GTAC 1 cut(s) 66
AgsI TTSAA 1 cut(s) 173
AhdI GACNNNNNGTC 1 cut(s) 77
AluBI AGCT 2 cut(s) 58, 112
AluI AGCT 2 cut(s) 58, 112
AspLEI GCGC 1 cut(s) 239
AsuHPI GGTGA 1 cut(s) 155
BccI CCATC 1 cut(s) 215
BceAI ACGGC 1 cut(s) 9
BclI TGATCA 1 cut(s) 114
BfmI CTRYAG 1 cut(s) 180
BfoI RGCGCY 1 cut(s) 240
BmeRI GACNNNNNGTC 1 cut(s) 77
BpuEI CTTGAG 1 cut(s) 60
Bsa29I ATCGAT 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 242
Bse1I ACTGG 1 cut(s) 236
Bse3DI GCAATG 1 cut(s) 146
BseCI ATCGAT 1 cut(s) 129
BseDI CCNNGG 1 cut(s) 242
BseGI GGATG 1 cut(s) 39
BseMI GCAATG 1 cut(s) 146
BseMII CTCAG 1 cut(s) 122
BseNI ACTGG 1 cut(s) 236
BshVI ATCGAT 1 cut(s) 129
BslFI GGGAC 1 cut(s) 189
BsmFI GGGAC 1 cut(s) 189
Bsp143I GATC 1 cut(s) 114
BspCNI CTCAG 1 cut(s) 121
BspDI ATCGAT 1 cut(s) 129
BsrDI GCAATG 1 cut(s) 146
BsrI ACTGG 1 cut(s) 236
BssECI CCNNGG 1 cut(s) 242
BssMI GATC 1 cut(s) 114
BssT1I CCWWGG 1 cut(s) 242
Bst4CI ACNGT 2 cut(s) 7, 151
BstDEI CTNAG 3 cut(s) 29, 86, 108
BstF5I GGATG 1 cut(s) 39
BstH2I RGCGCY 1 cut(s) 240
BstHHI GCGC 1 cut(s) 239
BstKTI GATC 1 cut(s) 117
BstMBI GATC 1 cut(s) 114
BstSFI CTRYAG 1 cut(s) 180
Bsu15I ATCGAT 1 cut(s) 129
BsuTUI ATCGAT 1 cut(s) 129
BtsCI GGATG 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 229
CfoI GCGC 1 cut(s) 239
ClaI ATCGAT 1 cut(s) 129
Csp6I GTAC 1 cut(s) 65
CviJI RGCY 3 cut(s) 58, 112, 196
CviKI_1 RGCY 3 cut(s) 58, 112, 196
CviQI GTAC 1 cut(s) 65
DdeI CTNAG 3 cut(s) 29, 86, 108
DpnI GATC 1 cut(s) 116
DpnII GATC 1 cut(s) 114
DriI GACNNNNNGTC 1 cut(s) 77
Eam1105I GACNNNNNGTC 1 cut(s) 77
Eco130I CCWWGG 1 cut(s) 242
Eco57I CTGAAG 1 cut(s) 38
EcoT14I CCWWGG 1 cut(s) 242
ErhI CCWWGG 1 cut(s) 242
FalI AAGNNNNNCTT 2 cut(s) 69, 101
FaqI GGGAC 1 cut(s) 189
FbaI TGATCA 1 cut(s) 114
FokI GGATG 1 cut(s) 26
GlaI GCGC 1 cut(s) 238
HaeII RGCGCY 1 cut(s) 240
HhaI GCGC 1 cut(s) 239
Hin6I GCGC 1 cut(s) 237
HinP1I GCGC 1 cut(s) 237
HinfI GANTC 2 cut(s) 13, 169
HphI GGTGA 1 cut(s) 155
Hpy188III TCNNGA 1 cut(s) 17
HpyCH4III ACNGT 2 cut(s) 7, 151
HpyF3I CTNAG 3 cut(s) 29, 86, 108
HspAI GCGC 1 cut(s) 237
Ksp22I TGATCA 1 cut(s) 114
Kzo9I GATC 1 cut(s) 114
LmnI GCTCC 1 cut(s) 234
LpnPI CCDG 3 cut(s) 30, 82, 217
MaeIII GTNAC 2 cut(s) 7, 161
MalI GATC 1 cut(s) 116
MboI GATC 1 cut(s) 114
MboII GAAGA 1 cut(s) 44
MfeI CAATTG 1 cut(s) 173
MluCI AATT 1 cut(s) 173
MlyI GAGTC 1 cut(s) 22
MnlI CCTC 4 cut(s) 84, 115, 129, 207
MseI TTAA 1 cut(s) 156
MspA1I CMGCKG 2 cut(s) 58, 112
MunI CAATTG 1 cut(s) 173
NdeII GATC 1 cut(s) 114
NmuCI GTSAC 1 cut(s) 161
PfeI GAWTC 1 cut(s) 169
PleI GAGTC 1 cut(s) 21
PpsI GAGTC 1 cut(s) 21
PvuII CAGCTG 2 cut(s) 58, 112
RsaI GTAC 1 cut(s) 66
RsaNI GTAC 1 cut(s) 65
SaqAI TTAA 1 cut(s) 156
Sau3AI GATC 1 cut(s) 114
SchI GAGTC 1 cut(s) 22
SetI ASST 5 cut(s) 60, 76, 107, 114, 248
SfcI CTRYAG 1 cut(s) 180
SgeI CNNG 8 cut(s) 24, 29, 81, 89, 111, 147, 178, 244
SmlI CTYRAG 1 cut(s) 75
SmoI CTYRAG 1 cut(s) 75
Sse9I AATT 1 cut(s) 173
StyI CCWWGG 1 cut(s) 242
TaaI ACNGT 2 cut(s) 7, 151
TaqI TCGA 2 cut(s) 129, 186
TasI AATT 1 cut(s) 173
TfiI GAWTC 1 cut(s) 169
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 1 cut(s) 236
TseFI GTSAC 1 cut(s) 161
Tsp45I GTSAC 1 cut(s) 161
TspRI CASTG 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.