Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002049

Physical Location & Seq

Genomic Coordinates Forward (+)

21250336 .. 21252095

Gene Structure 1760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g23920.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGAGGTTGCGTCACTTGAGCAAATGTATGAGAAATGACAAAATGCGCAGTACCCATGATCAAGTTAGGATTATTTTGAGCATCCTGCAACGTGATGTTGTGGATACGCCCTTGGGTCTGCTATCGTCCACCACGACCTCTGCTGACCAGATTGCCTTGAAGATCCTGCACTACTGGAAGCAATCTCTCTTTGCTGGGGCTGTCCTCCCTGATACCGTTGAGATCCACCAGCTGGAATGGGAGGATATGGCGTATAACATCCAGAATACTGAAGATACCCACTCTGATAATAAAGATCCAATGAATACTGATACTGCCTTGAAGCATAAGGAACGGCGTCACCCTGATAATGGTAGGCACCACCACGACCTATCTGACCATAACTACCAGACCCTGAAACTTGTTGGATCGGCTCTGAGGACAACTTATAACTCTATGTCTCATCTGCCCACATGTAAAACATCCACTGCTGCCCTGCCTACACTCTCCAAAATGCCTATTGTTACATTTGCGGCACAACGAAGCCATTCTTCTACTAGCATCTCCCTGTCTCTGGAATCTAGGACCCTCAGAAAATCTGCCACCTCTTCCCTAACCAATGGCACTGAAACCCTCGCTGGAAGAACTGGAACTAGCCCCACTTCGCTTAAAGCTCTGAGTATTGTGAGGTCCTTGAGATGCTTGACCTTTACCTTTATCATATTTCTTCTGATTGTCGTCCTTTTCTTCTTCCTCACTCTCACTAGAAGAAGCACAAGGAGTAGTGGTCGCCATAGAACGCCACTTTTTCTTAGTACCCAATCTGAAACGACGAAGCATCTCAACCGGATTAGTAGTAACATCCAAATGATAACGAGACAAGTCAATGAATCTCCTGTAATACTCATTCGCCGTCATCTTCCCCTGTCTCAATTGAGTAAATTCTTGCTTCTTGTGATCAATATACTCAGGGGAAATAAATCTTTTTTGAAACTACCTTTTAAACACTTCCTAATTAGCAATTTCCTCTGGGGTCAAATGATAAACCTCATTCATCTTGACCCACCTTTCAGAAGGAAGATTCCCTTGGCTTTGCATCACTCAGAAAGTTTTTTCAAGATGCTCGAGCCACCGCTTTGCCCCTTCATGTCCTTCATGAGTAGTCCTCTGAGGAGGGCAAAGCGAACACTGAATAACATGAGCTCAGTTGAACGACGTGGCTCTCTACGAGGTGACATAGTTCTGATAGAAGGCACCAAAATAATTAGAATATTCACCAAATATACAGGATTGCGAAACATAGGCTCTGATACCAAACTGACACACCCCGACCAAAATCAAGGCATGCTGGCCGTCACAAAAACCAAACTAACTAGAGCACTAAACAAGAACAAGTGTAAGACGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006000 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008865 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00051 ko00500 ko00520 ko01100 map00051 map00500 map00520 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

463

Amino Acids

52.62

Weight (kDa)

10.63

Isoelectric Point (pI)

56.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002049)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g00950 pycom01g02230 pycom01g02530 pycom01g03240 pycom01g03780 pycom01g03960 pycom01g10590 pycom02g05860 pycom02g18140 pycom02g18750 pycom02g25820 pycom03g06900 pycom03g14140 pycom04g13490 pycom05g06800 pycom05g08060 pycom05g11020 pycom06g01480 pycom07g11130 pycom08g10990 pycom08g12630 pycom08g15990 pycom09g16180 pycom10g06310 pycom11g05150 pycom11g21930 pycom12g00360 pycom12g03890 pycom12g08360 pycom13g22190 pycom13g23920 pycom13g25930 pycom13g26530 pycom13g27310 pycom13g27750 pycom13g28850 pycom15g23410 pycom15g30270 pycom15g35580 pycom16g01960 pycom17g21240 pycom420g00260 pycom808g00230
rosa_chinensis	RchiOBHm_Chr2g0089581
rosa_roxburghii	Rroxscaffold_5G00351150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	429
Acc16I	TGCGCA	1 cut(s)	47
AccB1I	GGYRCC	2 cut(s)	357, 1232
AccB7I	CCANNNNNTGG	1 cut(s)	232
AciI	CCGC	2 cut(s)	512, 1112
AclWI	GGATC	4 cut(s)	157, 217, 290, 415
AcoI	YGGCCR	1 cut(s)	1329
AcsI	RAATTY	1 cut(s)	920
AcuI	CTGAAG	1 cut(s)	291
AcyI	GRCGYC	1 cut(s)	337
AfaI	GTAC	2 cut(s)	52, 796
AfiI	CCNNNNNNNGG	3 cut(s)	232, 350, 553
AflIII	ACRYGT	1 cut(s)	452
AgsI	TTSAA	5 cut(s)	160, 322, 970, 1096, 1190
AjiI	CACGTC	1 cut(s)	1196
AjuI	GAANNNNNNNTTGG	2 cut(s)	1049, 1081
AluBI	AGCT	3 cut(s)	232, 653, 1182
AluI	AGCT	3 cut(s)	232, 653, 1182
Alw21I	GWGCWC	2 cut(s)	1184, 1360
Alw26I	GTCTC	4 cut(s)	444, 555, 850, 912
AlwI	GGATC	4 cut(s)	157, 217, 290, 415
AlwNI	CAGNNNCTG	1 cut(s)	394
Ama87I	CYCGRG	1 cut(s)	1103
AoxI	GGCC	1 cut(s)	1329
ApeKI	GCWGC	1 cut(s)	470
ApoI	RAATTY	1 cut(s)	920
Asp700I	GAANNNNTTC	1 cut(s)	526
AspLEI	GCGC	1 cut(s)	48
AspS9I	GGNCC	2 cut(s)	564, 669
AsuHPI	GGTGA	3 cut(s)	332, 1223, 1246
AvaI	CYCGRG	1 cut(s)	1103
AvaII	GGWCC	2 cut(s)	564, 669
BanI	GGYRCC	2 cut(s)	357, 1232
BanII	GRGCYC	1 cut(s)	1184
Bbv12I	GWGCWC	2 cut(s)	1184, 1360
BbvI	GCAGC	1 cut(s)	457
BceAI	ACGGC	3 cut(s)	350, 876, 1316
BciVI	GTATCC	1 cut(s)	97
BclI	TGATCA	2 cut(s)	58, 936
BcoDI	GTCTC	4 cut(s)	444, 555, 850, 912
BfaI	CTAG	5 cut(s)	537, 561, 633, 744, 1353
BfuI	GTATCC	1 cut(s)	97
BisI	GCNGC	2 cut(s)	471, 513
BlsI	GCNGC	2 cut(s)	472, 514
Bme18I	GGWCC	2 cut(s)	564, 669
BmeT110I	CYCGRG	1 cut(s)	1103
BmgBI	CACGTC	1 cut(s)	1196
BmgT120I	GGNCC	2 cut(s)	564, 669
BmiI	GGNNCC	3 cut(s)	359, 566, 1234
BmsI	GCATC	6 cut(s)	90, 549, 668, 826, 1084, 1089
BplI	GAGNNNNNCTC	2 cut(s)	1129, 1161
BpuEI	CTTGAG	2 cut(s)	37, 694
BsaHI	GRCGYC	1 cut(s)	337
BsaJI	CCNNGG	2 cut(s)	111, 1065
BsaWI	WCCGGW	1 cut(s)	825
BsaXI	ACNNNNNCTCC	2 cut(s)	751, 781
Bsc4I	CCNNNNNNNGG	3 cut(s)	232, 350, 553
Bse1I	ACTGG	2 cut(s)	179, 631
BseDI	CCNNGG	2 cut(s)	111, 1065
BseGI	GGATG	4 cut(s)	81, 258, 461, 840
BseLI	CCNNNNNNNGG	3 cut(s)	232, 350, 553
BseMII	CTCAG	7 cut(s)	407, 583, 647, 961, 1095, 1139, 1197
BseNI	ACTGG	2 cut(s)	179, 631
BseRI	GAGGAG	1 cut(s)	1165
BseXI	GCAGC	1 cut(s)	457
BseYI	CCCAGC	1 cut(s)	194
BsgI	GTGCAG	1 cut(s)	152
BshFI	GGCC	1 cut(s)	1331
BshNI	GGYRCC	2 cut(s)	357, 1232
BsiHKAI	GWGCWC	2 cut(s)	1184, 1360
BsiHKCI	CYCGRG	1 cut(s)	1103
BsiSI	CCGG	1 cut(s)	826
BslI	CCNNNNNNNGG	3 cut(s)	232, 350, 553
BsmAI	GTCTC	4 cut(s)	444, 555, 850, 912
BsnI	GGCC	1 cut(s)	1331
BsoBI	CYCGRG	1 cut(s)	1103
Bsp1286I	GDGCHC	2 cut(s)	1184, 1360
Bsp143I	GATC	6 cut(s)	58, 162, 222, 295, 407, 936
BspACI	CCGC	2 cut(s)	512, 1112
BspANI	GGCC	1 cut(s)	1331
BspCNI	CTCAG	7 cut(s)	408, 582, 648, 960, 1094, 1140, 1196
BspHI	TCATGA	1 cut(s)	1134
BspLI	GGNNCC	3 cut(s)	359, 566, 1234
BspPI	GGATC	4 cut(s)	157, 217, 290, 415
BspT107I	GGYRCC	2 cut(s)	357, 1232
BsrI	ACTGG	2 cut(s)	179, 631
BssECI	CCNNGG	2 cut(s)	111, 1065
BssMI	GATC	6 cut(s)	58, 162, 222, 295, 407, 936
BssNI	GRCGYC	1 cut(s)	337
BssT1I	CCWWGG	2 cut(s)	111, 1065
Bst4CI	ACNGT	1 cut(s)	217
Bst6I	CTCTTC	1 cut(s)	592
BstACI	GRCGYC	1 cut(s)	337
BstC8I	GCNNGC	2 cut(s)	1325, 1329
BstDEI	CTNAG	8 cut(s)	416, 569, 656, 791, 947, 1081, 1148, 1183
BstF5I	GGATG	4 cut(s)	81, 258, 461, 840
BstHHI	GCGC	1 cut(s)	48
BstKTI	GATC	6 cut(s)	61, 165, 225, 298, 410, 939
BstMAI	GTCTC	4 cut(s)	444, 555, 850, 912
BstMBI	GATC	6 cut(s)	58, 162, 222, 295, 407, 936
BstNSI	RCATGY	2 cut(s)	456, 1327
BstV1I	GCAGC	1 cut(s)	457
BstX2I	RGATCY	3 cut(s)	162, 222, 295
BstYI	RGATCY	3 cut(s)	162, 222, 295
BsuI	GTATCC	1 cut(s)	97
BsuRI	GGCC	1 cut(s)	1331
BtrI	CACGTC	1 cut(s)	1196
BtsCI	GGATG	4 cut(s)	81, 258, 461, 840
BtsI	GCAGTG	1 cut(s)	465
BtsIMutI	CAGTG	3 cut(s)	465, 603, 1166
Cac8I	GCNNGC	2 cut(s)	1325, 1329
CaiI	CAGNNNCTG	1 cut(s)	394
CciI	TCATGA	1 cut(s)	1134
CfoI	GCGC	1 cut(s)	48
Cfr13I	GGNCC	2 cut(s)	564, 669
CseI	GACGC	1 cut(s)	326
Csp6I	GTAC	2 cut(s)	51, 795
CviAII	CATG	6 cut(s)	56, 453, 1126, 1135, 1177, 1324
CviQI	GTAC	2 cut(s)	51, 795
DdeI	CTNAG	8 cut(s)	416, 569, 656, 791, 947, 1081, 1148, 1183
DpnI	GATC	6 cut(s)	60, 164, 224, 297, 409, 938
DpnII	GATC	6 cut(s)	58, 162, 222, 295, 407, 936
DraI	TTTAAA	1 cut(s)	982
EaeI	YGGCCR	1 cut(s)	1329
Eam1104I	CTCTTC	1 cut(s)	592
EarI	CTCTTC	1 cut(s)	592
Ecl136II	GAGCTC	1 cut(s)	1182
Eco130I	CCWWGG	2 cut(s)	111, 1065
Eco24I	GRGCYC	1 cut(s)	1184
Eco47I	GGWCC	2 cut(s)	564, 669
Eco53kI	GAGCTC	1 cut(s)	1182
Eco57I	CTGAAG	1 cut(s)	291
Eco88I	CYCGRG	1 cut(s)	1103
EcoICRI	GAGCTC	1 cut(s)	1182
EcoO109I	RGGNCCY	2 cut(s)	564, 669
EcoT14I	CCWWGG	2 cut(s)	111, 1065
EcoT38I	GRGCYC	1 cut(s)	1184
ErhI	CCWWGG	2 cut(s)	111, 1065
FaeI	CATG	6 cut(s)	59, 456, 1129, 1138, 1180, 1327
FalI	AAGNNNNNCTT	4 cut(s)	514, 546, 1049, 1081
FatI	CATG	6 cut(s)	55, 452, 1125, 1134, 1176, 1323
FbaI	TGATCA	2 cut(s)	58, 936
Fnu4HI	GCNGC	2 cut(s)	471, 513
FokI	GGATG	4 cut(s)	68, 245, 448, 827
FriOI	GRGCYC	1 cut(s)	1184
Fsp4HI	GCNGC	2 cut(s)	471, 513
FspBI	CTAG	5 cut(s)	537, 561, 633, 744, 1353
FspI	TGCGCA	1 cut(s)	47
GlaI	GCGC	1 cut(s)	47
GluI	GCNGC	2 cut(s)	471, 513
GsaI	CCCAGC	1 cut(s)	198
HaeIII	GGCC	1 cut(s)	1331
HapII	CCGG	1 cut(s)	826
HgaI	GACGC	1 cut(s)	326
HhaI	GCGC	1 cut(s)	48
Hin1I	GRCGYC	1 cut(s)	337
Hin1II	CATG	6 cut(s)	59, 456, 1129, 1138, 1180, 1327
Hin6I	GCGC	1 cut(s)	46
HinP1I	GCGC	1 cut(s)	46
HinfI	GANTC	3 cut(s)	557, 869, 1060
HpaII	CCGG	1 cut(s)	826
HphI	GGTGA	3 cut(s)	332, 1223, 1246
Hpy166II	GTNNAC	1 cut(s)	129
Hpy188III	TCNNGA	5 cut(s)	262, 554, 1037, 1096, 1135
Hpy8I	GTNNAC	1 cut(s)	129
Hpy99I	CGWCG	2 cut(s)	814, 1197
HpyAV	CCTTC	4 cut(s)	1047, 1132, 1141, 1223
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4IV	ACGT	2 cut(s)	91, 1195
HpyCH4V	TGCA	3 cut(s)	88, 169, 1075
HpyF3I	CTNAG	8 cut(s)	416, 569, 656, 791, 947, 1081, 1148, 1183
HpySE526I	ACGT	2 cut(s)	91, 1195
Hsp92I	GRCGYC	1 cut(s)	337
Hsp92II	CATG	6 cut(s)	59, 456, 1129, 1138, 1180, 1327
HspAI	GCGC	1 cut(s)	46
Ksp22I	TGATCA	2 cut(s)	58, 936
Kzo9I	GATC	6 cut(s)	58, 162, 222, 295, 407, 936
Lsp1109I	GCAGC	1 cut(s)	457
LweI	GCATC	6 cut(s)	90, 549, 668, 826, 1084, 1089
MaeI	CTAG	5 cut(s)	537, 561, 633, 744, 1353
MaeII	ACGT	2 cut(s)	91, 1195
MaeIII	GTNAC	6 cut(s)	11, 338, 502, 836, 1211, 1333
MalI	GATC	6 cut(s)	60, 164, 224, 297, 409, 938
MboI	GATC	6 cut(s)	58, 162, 222, 295, 407, 936
MfeI	CAATTG	1 cut(s)	911
MflI	RGATCY	3 cut(s)	162, 222, 295
MhlI	GDGCHC	2 cut(s)	1184, 1360
MluCI	AATT	5 cut(s)	911, 920, 993, 1000, 1242
MmeI	TCCRAC	1 cut(s)	385
MroXI	GAANNNNTTC	1 cut(s)	526
MseI	TTAA	2 cut(s)	648, 981
MslI	CAYNNNNRTG	1 cut(s)	845
MspA1I	CMGCKG	1 cut(s)	232
MspI	CCGG	1 cut(s)	826
MunI	CAATTG	1 cut(s)	911
NdeII	GATC	6 cut(s)	58, 162, 222, 295, 407, 936
NlaIII	CATG	6 cut(s)	59, 456, 1129, 1138, 1180, 1327
NlaIV	GGNNCC	3 cut(s)	359, 566, 1234
NmuCI	GTSAC	4 cut(s)	11, 338, 1211, 1333
NsbI	TGCGCA	1 cut(s)	47
NspI	RCATGY	2 cut(s)	456, 1327
PaeI	GCATGC	1 cut(s)	1327
PaeR7I	CTCGAG	1 cut(s)	1103
PagI	TCATGA	1 cut(s)	1134
PciI	ACATGT	1 cut(s)	452
PcsI	WCGNNNNNNNCGW	1 cut(s)	131
PdmI	GAANNNNTTC	1 cut(s)	526
PfeI	GAWTC	3 cut(s)	557, 869, 1060
PflMI	CCANNNNNTGG	1 cut(s)	232
PkrI	GCNGC	2 cut(s)	472, 514
PpuMI	RGGWCCY	2 cut(s)	564, 669
PscI	ACATGT	1 cut(s)	452
PsiI	TTATAA	1 cut(s)	429
Psp124BI	GAGCTC	1 cut(s)	1184
Psp5II	RGGWCCY	2 cut(s)	564, 669
PspFI	CCCAGC	1 cut(s)	194
PspN4I	GGNNCC	3 cut(s)	359, 566, 1234
PspPI	GGNCC	2 cut(s)	564, 669
PspPPI	RGGWCCY	2 cut(s)	564, 669
PspXI	VCTCGAGB	1 cut(s)	1103
PstNI	CAGNNNCTG	1 cut(s)	394
PsuI	RGATCY	3 cut(s)	162, 222, 295
PvuII	CAGCTG	1 cut(s)	232
RsaI	GTAC	2 cut(s)	52, 796
RsaNI	GTAC	2 cut(s)	51, 795
RseI	CAYNNNNRTG	1 cut(s)	845
SacI	GAGCTC	1 cut(s)	1184
SaqAI	TTAA	2 cut(s)	648, 981
SatI	GCNGC	2 cut(s)	471, 513
Sau3AI	GATC	6 cut(s)	58, 162, 222, 295, 407, 936
Sau96I	GGNCC	2 cut(s)	564, 669
SduI	GDGCHC	2 cut(s)	1184, 1360
SfaNI	GCATC	6 cut(s)	90, 549, 668, 826, 1084, 1089
Sfr274I	CTCGAG	1 cut(s)	1103
SinI	GGWCC	2 cut(s)	564, 669
SlaI	CTCGAG	1 cut(s)	1103
SmiMI	CAYNNNNRTG	1 cut(s)	845
SmlI	CTYRAG	3 cut(s)	16, 673, 1103
SmoI	CTYRAG	3 cut(s)	16, 673, 1103
SphI	GCATGC	1 cut(s)	1327
Sse9I	AATT	5 cut(s)	911, 920, 993, 1000, 1242
SsiI	CCGC	2 cut(s)	512, 1112
SspI	AATATT	1 cut(s)	1251
SspMI	CTAG	5 cut(s)	537, 561, 633, 744, 1353
SstI	GAGCTC	1 cut(s)	1184
StyI	CCWWGG	2 cut(s)	111, 1065
TaaI	ACNGT	1 cut(s)	217
TaiI	ACGT	2 cut(s)	94, 1198
TaqI	TCGA	1 cut(s)	1104
TasI	AATT	5 cut(s)	911, 920, 993, 1000, 1242
TauI	GCSGC	1 cut(s)	515
TfiI	GAWTC	3 cut(s)	557, 869, 1060
Tru1I	TTAA	2 cut(s)	648, 981
Tru9I	TTAA	2 cut(s)	648, 981
TscAI	CASTG	3 cut(s)	472, 610, 1173
TseFI	GTSAC	4 cut(s)	11, 338, 1211, 1333
TseI	GCWGC	1 cut(s)	470
Tsp45I	GTSAC	4 cut(s)	11, 338, 1211, 1333
TspDTI	ATGAA	5 cut(s)	317, 882, 1022, 1114, 1123
TspRI	CASTG	3 cut(s)	472, 610, 1173
Van91I	CCANNNNNTGG	1 cut(s)	232
VpaK11BI	GGWCC	2 cut(s)	564, 669
XapI	RAATTY	1 cut(s)	920
XceI	RCATGY	2 cut(s)	456, 1327
XhoI	CTCGAG	1 cut(s)	1103
XmnI	GAANNNNTTC	1 cut(s)	526
XspI	CTAG	5 cut(s)	537, 561, 633, 744, 1353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.