Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002049

Physical Location & Seq

Genomic Coordinates Reverse (-)

16449188 .. 16449628

Gene Structure 441 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g18140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGTCGTACATGCTCCGCTTTCGACTTAGAATACACCAGAATATCGTCAATGAAGACAATAACAAATCTATCCAAGTAAGGCTGGAATACCCGGTTCATCAAATCCATGAAGGCAGCTGGTGCATTTGTCAACCCAAATGGCATAACCAGAAACTCGTAATGACCGTAACGAGTCCTGAACGCCGTCTTAGGGACATCATCCCTACTGATCTTCAGCTGATAGTAACCAGACCTCAAATCAATCTTAGAGAACACACAAGCACCTCTCAGCTGATCGAACAAATCATCGATACGAGGCAATGGATAACGGTTTTTAATCGTCACCCGATTGAGTTGCCTGTAGTCGATGCACAGCCTCAAAGTTCCATCCTTCTTCCTCACAAACAACACTGGAGCGCCCCAAGGCGAAGTACTAGGCTGGATAAATCCCTTATCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

147

Amino Acids

17.45

Weight (kDa)

9.82

Isoelectric Point (pI)

74.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002049)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g00950 pycom01g02230 pycom01g02530 pycom01g03240 pycom01g03780 pycom01g03960 pycom01g10590 pycom02g05860 pycom02g18140 pycom02g18750 pycom02g25820 pycom03g06900 pycom03g14140 pycom04g13490 pycom05g06800 pycom05g08060 pycom05g11020 pycom06g01480 pycom07g11130 pycom08g10990 pycom08g12630 pycom08g15990 pycom09g16180 pycom10g06310 pycom11g05150 pycom11g21930 pycom12g00360 pycom12g03890 pycom12g08360 pycom13g22190 pycom13g23920 pycom13g25930 pycom13g26530 pycom13g27310 pycom13g27750 pycom13g28850 pycom15g23410 pycom15g30270 pycom15g35580 pycom16g01960 pycom17g21240 pycom420g00260 pycom808g00230
rosa_chinensis	RchiOBHm_Chr2g0089581
rosa_roxburghii	Rroxscaffold_5G00351150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	16
AcuI	CTGAAG	1 cut(s)	197
AfaI	GTAC	2 cut(s)	8, 412
AfiI	CCNNNNNNNGG	1 cut(s)	190
AluBI	AGCT	3 cut(s)	117, 217, 271
AluI	AGCT	3 cut(s)	117, 217, 271
ApeKI	GCWGC	1 cut(s)	114
AspLEI	GCGC	1 cut(s)	398
AsuC2I	CCSGG	1 cut(s)	92
AsuHPI	GGTGA	1 cut(s)	314
BbsI	GAAGAC	1 cut(s)	60
BbvI	GCAGC	1 cut(s)	126
BccI	CCATC	1 cut(s)	374
BceAI	ACGGC	1 cut(s)	168
BcgI	CGANNNNNNTGC	2 cut(s)	316, 350
BcnI	CCSGG	1 cut(s)	92
BfaI	CTAG	1 cut(s)	414
BfmI	CTRYAG	1 cut(s)	339
BfoI	RGCGCY	1 cut(s)	399
BisI	GCNGC	1 cut(s)	115
BlsI	GCNGC	1 cut(s)	116
BmcAI	AGTACT	1 cut(s)	412
Bme1390I	CCNGG	1 cut(s)	92
BmrFI	CCNGG	1 cut(s)	92
BmsI	GCATC	1 cut(s)	337
BpiI	GAAGAC	1 cut(s)	60
BpmI	CTGGAG	1 cut(s)	412
BpuMI	CCSGG	1 cut(s)	92
Bsa29I	ATCGAT	1 cut(s)	288
BsaJI	CCNNGG	1 cut(s)	401
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
Bse1I	ACTGG	1 cut(s)	395
Bse3DI	GCAATG	1 cut(s)	305
BseCI	ATCGAT	1 cut(s)	288
BseDI	CCNNGG	1 cut(s)	401
BseGI	GGATG	2 cut(s)	198, 366
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseMI	GCAATG	1 cut(s)	305
BseMII	CTCAG	1 cut(s)	281
BseNI	ACTGG	1 cut(s)	395
BseXI	GCAGC	1 cut(s)	126
BshVI	ATCGAT	1 cut(s)	288
BsiSI	CCGG	1 cut(s)	92
BslFI	GGGAC	1 cut(s)	206
BslI	CCNNNNNNNGG	1 cut(s)	190
BsmFI	GGGAC	1 cut(s)	206
Bsp143I	GATC	2 cut(s)	208, 273
BspACI	CCGC	1 cut(s)	16
BspCNI	CTCAG	1 cut(s)	280
BspDI	ATCGAT	1 cut(s)	288
BsrDI	GCAATG	1 cut(s)	305
BsrI	ACTGG	1 cut(s)	395
BssECI	CCNNGG	1 cut(s)	401
BssMI	GATC	2 cut(s)	208, 273
BssT1I	CCWWGG	1 cut(s)	401
Bst4CI	ACNGT	2 cut(s)	166, 310
BstAPI	GCANNNNNTGC	1 cut(s)	120
BstDEI	CTNAG	4 cut(s)	26, 188, 245, 267
BstF5I	GGATG	2 cut(s)	198, 366
BstH2I	RGCGCY	1 cut(s)	399
BstHHI	GCGC	1 cut(s)	398
BstKTI	GATC	2 cut(s)	211, 276
BstMBI	GATC	2 cut(s)	208, 273
BstMWI	GCNNNNNNNGC	1 cut(s)	120
BstNSI	RCATGY	1 cut(s)	13
BstSCI	CCNGG	1 cut(s)	90
BstSFI	CTRYAG	1 cut(s)	339
BstV1I	GCAGC	1 cut(s)	126
BstV2I	GAAGAC	1 cut(s)	60
Bsu15I	ATCGAT	1 cut(s)	288
BsuTUI	ATCGAT	1 cut(s)	288
BtsCI	GGATG	2 cut(s)	198, 366
BtsIMutI	CAGTG	1 cut(s)	388
CfoI	GCGC	1 cut(s)	398
ClaI	ATCGAT	1 cut(s)	288
Csp6I	GTAC	2 cut(s)	7, 411
CviAII	CATG	2 cut(s)	10, 107
CviJI	RGCY	6 cut(s)	82, 117, 217, 271, 355, 418
CviKI_1	RGCY	6 cut(s)	82, 117, 217, 271, 355, 418
CviQI	GTAC	2 cut(s)	7, 411
DdeI	CTNAG	4 cut(s)	26, 188, 245, 267
DpnI	GATC	2 cut(s)	210, 275
DpnII	GATC	2 cut(s)	208, 273
Eco130I	CCWWGG	1 cut(s)	401
Eco57I	CTGAAG	1 cut(s)	197
EcoT14I	CCWWGG	1 cut(s)	401
ErhI	CCWWGG	1 cut(s)	401
FaeI	CATG	2 cut(s)	13, 110
FaiI	YATR	3 cut(s)	11, 108, 144
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	2 cut(s)	9, 106
Fnu4HI	GCNGC	1 cut(s)	115
FokI	GGATG	2 cut(s)	185, 353
Fsp4HI	GCNGC	1 cut(s)	115
FspBI	CTAG	1 cut(s)	414
GlaI	GCGC	1 cut(s)	397
GluI	GCNGC	1 cut(s)	115
GsuI	CTGGAG	1 cut(s)	412
HaeII	RGCGCY	1 cut(s)	399
HapII	CCGG	1 cut(s)	92
HhaI	GCGC	1 cut(s)	398
Hin1II	CATG	2 cut(s)	13, 110
Hin6I	GCGC	1 cut(s)	396
HinP1I	GCGC	1 cut(s)	396
HincII	GTYRAC	1 cut(s)	131
HindII	GTYRAC	1 cut(s)	131
HinfI	GANTC	1 cut(s)	172
HpaII	CCGG	1 cut(s)	92
HphI	GGTGA	1 cut(s)	314
Hpy166II	GTNNAC	1 cut(s)	131
Hpy188III	TCNNGA	1 cut(s)	176
Hpy8I	GTNNAC	1 cut(s)	131
HpyAV	CCTTC	2 cut(s)	104, 380
HpyCH4III	ACNGT	2 cut(s)	166, 310
HpyCH4V	TGCA	2 cut(s)	123, 350
HpyF10VI	GCNNNNNNNGC	1 cut(s)	120
HpyF3I	CTNAG	4 cut(s)	26, 188, 245, 267
Hsp92II	CATG	2 cut(s)	13, 110
HspAI	GCGC	1 cut(s)	396
Kzo9I	GATC	2 cut(s)	208, 273
LmnI	GCTCC	2 cut(s)	18, 393
Lsp1109I	GCAGC	1 cut(s)	126
LweI	GCATC	1 cut(s)	337
MaeI	CTAG	1 cut(s)	414
MaeIII	GTNAC	3 cut(s)	166, 223, 320
MalI	GATC	2 cut(s)	210, 275
MboI	GATC	2 cut(s)	208, 273
MboII	GAAGA	3 cut(s)	65, 203, 365
MlyI	GAGTC	1 cut(s)	181
MnlI	CCTC	5 cut(s)	243, 274, 288, 366, 387
MseI	TTAA	1 cut(s)	315
MspA1I	CMGCKG	3 cut(s)	117, 217, 271
MspI	CCGG	1 cut(s)	92
MspR9I	CCNGG	1 cut(s)	92
MwoI	GCNNNNNNNGC	1 cut(s)	120
NciI	CCSGG	1 cut(s)	92
NdeII	GATC	2 cut(s)	208, 273
NlaIII	CATG	2 cut(s)	13, 110
NmuCI	GTSAC	1 cut(s)	320
NspI	RCATGY	1 cut(s)	13
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PkrI	GCNGC	1 cut(s)	116
PleI	GAGTC	1 cut(s)	180
PpsI	GAGTC	1 cut(s)	180
PvuII	CAGCTG	3 cut(s)	117, 217, 271
RsaI	GTAC	2 cut(s)	8, 412
RsaNI	GTAC	2 cut(s)	7, 411
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	1 cut(s)	115
Sau3AI	GATC	2 cut(s)	208, 273
ScaI	AGTACT	1 cut(s)	412
SchI	GAGTC	1 cut(s)	181
ScrFI	CCNGG	1 cut(s)	92
SetI	ASST	5 cut(s)	119, 219, 235, 266, 273
SfaNI	GCATC	1 cut(s)	337
SfcI	CTRYAG	1 cut(s)	339
SsiI	CCGC	1 cut(s)	16
SspMI	CTAG	1 cut(s)	414
StyD4I	CCNGG	1 cut(s)	90
StyI	CCWWGG	1 cut(s)	401
TaaI	ACNGT	2 cut(s)	166, 310
TaqI	TCGA	4 cut(s)	22, 276, 288, 345
TatI	WGTACW	1 cut(s)	410
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	1 cut(s)	395
TseFI	GTSAC	1 cut(s)	320
TseI	GCWGC	1 cut(s)	114
Tsp45I	GTSAC	1 cut(s)	320
TspDTI	ATGAA	3 cut(s)	66, 86, 123
TspRI	CASTG	1 cut(s)	395
XceI	RCATGY	1 cut(s)	13
XspI	CTAG	1 cut(s)	414
ZrmI	AGTACT	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.