pycom04g13490

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Reverse (-)
16540501 .. 16540923
423 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g13490.1

Sequence Viewer

Length: 423 bp
ATGATAATCAATCGTGCAATCGTAATCGCTGAGCAACTCCAACCACCTCCGTTGGCGAAGATTAAGTTCCTTCTGGGTGAAGAGATATTGAAGACTCTTGTGATCTGTGAAGATCCTACACTTTTCTCCGTAAAGGTAGTGTCTCCACAACTTCAACGCAAAGATGATAGCAGCCAACTCCAAATCATGTGTAGGGTAATTCATCTCATGGGTTTTCAACTGCCGCGAAGCATAAGCAATCACCCTACCATGCTGCATCAACACACATCCCAGACCATTCAAAGAAGCATCGCTATAAACCTCGAAATCACCACTATCGTCCAGGAGTGCCAAAACAGGTGCATTAGTAAGACAATGCTTCAACTGCTGGAAACTCTGCTCACACTTATCATTCCACTCAAACTTAACATCTTTCCTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.93

Weight (kDa)

8.71

Isoelectric Point (pI)

52.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 226
AciI CCGC 1 cut(s) 224
AclWI GGATC 1 cut(s) 107
AgsI TTSAA 5 cut(s) 91, 155, 218, 281, 362
AjnI CCWGG 1 cut(s) 321
Alw26I GTCTC 1 cut(s) 147
AlwI GGATC 1 cut(s) 107
ApeKI GCWGC 2 cut(s) 171, 253
AsuHPI GGTGA 3 cut(s) 89, 233, 301
BbsI GAAGAC 1 cut(s) 98
BbvI GCAGC 2 cut(s) 183, 240
BciT130I CCWGG 1 cut(s) 323
BcoDI GTCTC 1 cut(s) 147
BisI GCNGC 3 cut(s) 172, 224, 254
BlpI GCTNAGC 1 cut(s) 30
BlsI GCNGC 3 cut(s) 173, 225, 255
Bme1390I CCNGG 1 cut(s) 323
BmrFI CCNGG 1 cut(s) 323
BmsI GCATC 2 cut(s) 265, 297
BpiI GAAGAC 1 cut(s) 98
Bpu1102I GCTNAGC 1 cut(s) 30
BseBI CCWGG 1 cut(s) 323
BseGI GGATG 1 cut(s) 266
BseMII CTCAG 1 cut(s) 21
BseXI GCAGC 2 cut(s) 183, 240
Bsh1236I CGCG 1 cut(s) 226
BsmAI GTCTC 1 cut(s) 147
Bsp143I GATC 2 cut(s) 102, 112
Bsp1720I GCTNAGC 1 cut(s) 30
BspACI CCGC 1 cut(s) 224
BspCNI CTCAG 1 cut(s) 22
BspFNI CGCG 1 cut(s) 226
BspPI GGATC 1 cut(s) 107
BssMI GATC 2 cut(s) 102, 112
Bst2UI CCWGG 1 cut(s) 323
Bst6I CTCTTC 1 cut(s) 75
BstDEI CTNAG 1 cut(s) 30
BstF5I GGATG 1 cut(s) 266
BstFNI CGCG 1 cut(s) 226
BstKTI GATC 2 cut(s) 105, 115
BstMAI GTCTC 1 cut(s) 147
BstMBI GATC 2 cut(s) 102, 112
BstMWI GCNNNNNNNGC 1 cut(s) 364
BstNI CCWGG 1 cut(s) 323
BstSCI CCNGG 1 cut(s) 321
BstUI CGCG 1 cut(s) 226
BstV1I GCAGC 2 cut(s) 183, 240
BstV2I GAAGAC 1 cut(s) 98
BstX2I RGATCY 1 cut(s) 112
BstYI RGATCY 1 cut(s) 112
BtgZI GCGATG 1 cut(s) 274
BtsCI GGATG 1 cut(s) 266
CspCI CAANNNNNGTGG 2 cut(s) 33, 68
CviAII CATG 3 cut(s) 187, 208, 250
CviJI RGCY 1 cut(s) 174
CviKI_1 RGCY 1 cut(s) 174
DdeI CTNAG 1 cut(s) 30
DpnI GATC 2 cut(s) 104, 114
DpnII GATC 2 cut(s) 102, 112
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
EcoRII CCWGG 1 cut(s) 321
FaeI CATG 3 cut(s) 190, 211, 253
FaiI YATR 5 cut(s) 188, 209, 233, 251, 296
FatI CATG 3 cut(s) 186, 207, 249
Fnu4HI GCNGC 3 cut(s) 172, 224, 254
FokI GGATG 1 cut(s) 253
Fsp4HI GCNGC 3 cut(s) 172, 224, 254
GluI GCNGC 3 cut(s) 172, 224, 254
Hin1II CATG 3 cut(s) 190, 211, 253
HinfI GANTC 1 cut(s) 94
HphI GGTGA 3 cut(s) 89, 233, 301
HpyAV CCTTC 1 cut(s) 80
HpyCH4V TGCA 3 cut(s) 17, 256, 342
HpyF10VI GCNNNNNNNGC 1 cut(s) 364
HpyF3I CTNAG 1 cut(s) 30
Hsp92II CATG 3 cut(s) 190, 211, 253
Kzo9I GATC 2 cut(s) 102, 112
LpnPI CCDG 6 cut(s) 59, 284, 308, 322, 335, 353
Lsp1109I GCAGC 2 cut(s) 183, 240
LweI GCATC 2 cut(s) 265, 297
MalI GATC 2 cut(s) 104, 114
MboI GATC 2 cut(s) 102, 112
MboII GAAGA 4 cut(s) 70, 92, 103, 122
MflI RGATCY 1 cut(s) 112
MluCI AATT 1 cut(s) 198
MlyI GAGTC 1 cut(s) 88
MmeI TCCRAC 1 cut(s) 64
MnlI CCTC 2 cut(s) 57, 311
MseI TTAA 3 cut(s) 63, 405, 421
MspR9I CCNGG 1 cut(s) 323
MvaI CCWGG 1 cut(s) 323
MvnI CGCG 1 cut(s) 226
MwoI GCNNNNNNNGC 1 cut(s) 364
NdeII GATC 2 cut(s) 102, 112
NlaIII CATG 3 cut(s) 190, 211, 253
PfoI TCCNGGA 1 cut(s) 321
PkrI GCNGC 3 cut(s) 173, 225, 255
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
Psp6I CCWGG 1 cut(s) 321
PspGI CCWGG 1 cut(s) 321
PsuI RGATCY 1 cut(s) 112
SaqAI TTAA 3 cut(s) 63, 405, 421
SatI GCNGC 3 cut(s) 172, 224, 254
Sau3AI GATC 2 cut(s) 102, 112
SchI GAGTC 1 cut(s) 88
ScrFI CCNGG 1 cut(s) 323
SetI ASST 4 cut(s) 49, 138, 303, 341
SfaNI GCATC 2 cut(s) 265, 297
Sse9I AATT 1 cut(s) 198
SsiI CCGC 1 cut(s) 224
StyD4I CCNGG 1 cut(s) 321
TaqI TCGA 1 cut(s) 303
TasI AATT 1 cut(s) 198
TauI GCSGC 1 cut(s) 226
Tru1I TTAA 3 cut(s) 63, 405, 421
Tru9I TTAA 3 cut(s) 63, 405, 421
TseI GCWGC 2 cut(s) 171, 253
TspDTI ATGAA 1 cut(s) 191
TspGWI ACGGA 2 cut(s) 39, 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.