RchiOBHm_Chr2g0089581

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
3736755 .. 3738484
1730 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46488

Sequence Viewer

Length: 345 bp
ATGAAGCCGGAAAATCTCCCTTGTGAATGTCTCTGCAATCTGAGCTGCTATGAATGGGTGAGAGACCGGAATGAAATGGGCAAACTTCGAGAGGCGATCAACCACCACCACGGTTGCATTGTATCCATGAGAATCAGGCAATCCTTCCATAAAGTCCACGGAGATGTCTTCCCATGTATCCTCAGGTATAGGGAGTGGTTGCAGAAGGCTTGGGGGATGTATAGCCTCATGATTTTTCCTTTGGCATTGATCACAGGAGGCCACATAGAGTTTTACCTTCTTCCGCATTCCAAGCCAAGCAAAGTTGCGGGAGAGACGAGTAAGGTTCTTAGGTACCCTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

13.39

Weight (kDa)

8.8

Isoelectric Point (pI)

44.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 333
AccB1I GGYRCC 1 cut(s) 333
AciI CCGC 2 cut(s) 284, 308
AfaI GTAC 1 cut(s) 335
AluBI AGCT 1 cut(s) 45
AluI AGCT 1 cut(s) 45
Alw26I GTCTC 3 cut(s) 35, 57, 308
AoxI GGCC 1 cut(s) 259
ApeKI GCWGC 1 cut(s) 45
Asp718I GGTACC 1 cut(s) 333
AsuHPI GGTGA 1 cut(s) 70
AxyI CCTNAGG 1 cut(s) 182
BanI GGYRCC 1 cut(s) 333
BbsI GAAGAC 1 cut(s) 160
BbvI GCAGC 1 cut(s) 32
BciVI GTATCC 2 cut(s) 133, 188
BclI TGATCA 1 cut(s) 249
BcoDI GTCTC 3 cut(s) 35, 57, 308
BfuI GTATCC 2 cut(s) 133, 188
BisI GCNGC 1 cut(s) 46
BlsI GCNGC 1 cut(s) 47
BmiI GGNNCC 1 cut(s) 335
BpiI GAAGAC 1 cut(s) 160
BsaI GGTCTC 1 cut(s) 57
BsaJI CCNNGG 2 cut(s) 109, 157
BsaWI WCCGGW 1 cut(s) 66
Bse21I CCTNAGG 1 cut(s) 182
BseDI CCNNGG 2 cut(s) 109, 157
BseGI GGATG 1 cut(s) 222
BseMII CTCAG 3 cut(s) 32, 196, 330
BseXI GCAGC 1 cut(s) 32
BshFI GGCC 1 cut(s) 261
BshNI GGYRCC 1 cut(s) 333
BsiSI CCGG 2 cut(s) 8, 67
BsmAI GTCTC 3 cut(s) 35, 57, 308
BsmBI CGTCTC 1 cut(s) 308
BsmI GAATGC 1 cut(s) 286
BsnI GGCC 1 cut(s) 261
Bso31I GGTCTC 1 cut(s) 57
Bsp143I GATC 2 cut(s) 96, 249
BspACI CCGC 2 cut(s) 284, 308
BspANI GGCC 1 cut(s) 261
BspCNI CTCAG 3 cut(s) 33, 195, 331
BspHI TCATGA 1 cut(s) 228
BspLI GGNNCC 1 cut(s) 335
BspT107I GGYRCC 1 cut(s) 333
BspTNI GGTCTC 1 cut(s) 57
BssECI CCNNGG 2 cut(s) 109, 157
BssMI GATC 2 cut(s) 96, 249
Bst4CI ACNGT 1 cut(s) 113
BstDEI CTNAG 4 cut(s) 41, 182, 329, 339
BstDSI CCRYGG 2 cut(s) 109, 157
BstF5I GGATG 1 cut(s) 222
BstKTI GATC 2 cut(s) 99, 252
BstMAI GTCTC 3 cut(s) 35, 57, 308
BstMBI GATC 2 cut(s) 96, 249
BstMWI GCNNNNNNNGC 2 cut(s) 42, 292
BstV1I GCAGC 1 cut(s) 32
BstV2I GAAGAC 1 cut(s) 160
Bsu36I CCTNAGG 1 cut(s) 182
BsuI GTATCC 2 cut(s) 133, 188
BsuRI GGCC 1 cut(s) 261
BtgI CCRYGG 2 cut(s) 109, 157
BtsCI GGATG 1 cut(s) 222
CciI TCATGA 1 cut(s) 228
Csp6I GTAC 1 cut(s) 334
CspCI CAANNNNNGTGG 2 cut(s) 95, 130
CviAII CATG 3 cut(s) 127, 174, 229
CviJI RGCY 6 cut(s) 7, 45, 209, 225, 261, 295
CviKI_1 RGCY 6 cut(s) 7, 45, 209, 225, 261, 295
CviQI GTAC 1 cut(s) 334
DdeI CTNAG 4 cut(s) 41, 182, 329, 339
DpnI GATC 2 cut(s) 98, 251
DpnII GATC 2 cut(s) 96, 249
Eco31I GGTCTC 1 cut(s) 57
Eco81I CCTNAGG 1 cut(s) 182
Esp3I CGTCTC 1 cut(s) 308
FaeI CATG 3 cut(s) 130, 177, 232
FaiI YATR 8 cut(s) 51, 128, 150, 175, 189, 222, 230, 266
FatI CATG 3 cut(s) 126, 173, 228
FauI CCCGC 1 cut(s) 301
FbaI TGATCA 1 cut(s) 249
Fnu4HI GCNGC 1 cut(s) 46
FokI GGATG 1 cut(s) 229
Fsp4HI GCNGC 1 cut(s) 46
GluI GCNGC 1 cut(s) 46
HaeIII GGCC 1 cut(s) 261
HapII CCGG 2 cut(s) 8, 67
Hin1II CATG 3 cut(s) 130, 177, 232
HinfI GANTC 1 cut(s) 132
HpaII CCGG 2 cut(s) 8, 67
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 1 cut(s) 42
Hpy188III TCNNGA 2 cut(s) 89, 229
Hpy8I GTNNAC 1 cut(s) 157
HpyAV CCTTC 3 cut(s) 154, 199, 287
HpyCH4III ACNGT 1 cut(s) 113
HpyCH4V TGCA 3 cut(s) 36, 117, 202
HpyF10VI GCNNNNNNNGC 2 cut(s) 42, 292
HpyF3I CTNAG 4 cut(s) 41, 182, 329, 339
Hsp92II CATG 3 cut(s) 130, 177, 232
KpnI GGTACC 1 cut(s) 337
Ksp22I TGATCA 1 cut(s) 249
Kzo9I GATC 2 cut(s) 96, 249
LpnPI CCDG 5 cut(s) 21, 80, 121, 169, 240
Lsp1109I GCAGC 1 cut(s) 32
MalI GATC 2 cut(s) 98, 251
MboI GATC 2 cut(s) 96, 249
MboII GAAGA 2 cut(s) 160, 272
MnlI CCTC 4 cut(s) 85, 191, 236, 251
MslI CAYNNNNRTG 1 cut(s) 162
MspI CCGG 2 cut(s) 8, 67
Mva1269I GAATGC 1 cut(s) 286
MwoI GCNNNNNNNGC 2 cut(s) 42, 292
NdeII GATC 2 cut(s) 96, 249
NlaIII CATG 3 cut(s) 130, 177, 232
NlaIV GGNNCC 1 cut(s) 335
PagI TCATGA 1 cut(s) 228
PctI GAATGC 1 cut(s) 286
PfeI GAWTC 1 cut(s) 132
PkrI GCNGC 1 cut(s) 47
PspN4I GGNNCC 1 cut(s) 335
RsaI GTAC 1 cut(s) 335
RsaNI GTAC 1 cut(s) 334
RseI CAYNNNNRTG 1 cut(s) 162
SatI GCNGC 1 cut(s) 46
Sau3AI GATC 2 cut(s) 96, 249
SetI ASST 5 cut(s) 47, 188, 279, 327, 335
SmiMI CAYNNNNRTG 1 cut(s) 162
SsiI CCGC 2 cut(s) 284, 308
TaaI ACNGT 1 cut(s) 113
TaqI TCGA 1 cut(s) 88
TfiI GAWTC 1 cut(s) 132
TseI GCWGC 1 cut(s) 45
TspDTI ATGAA 3 cut(s) 17, 66, 87
TspGWI ACGGA 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.