pycom15g23410

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
17496495 .. 17496851
357 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g23410.1

Sequence Viewer

Length: 357 bp
ATGTGCCAACTTAGTGAGCCGATCAACGATCACCCAAATGCCGTCAAAGCCACTAGGTGTACGCGGCAACTTGTACACAAAATCCATAGTGATATTTTCCCATTTCCACTCTGGAACGGGAAGCGGCTGCAACAATCCAAACGGCTTCTTTCTTTCTGCTTTAACCTGCTGACAAACAGCACACCTGCTCACATACTCGGCTATCTCCCTTTTTATACCCGGCCAATAATAAAATGGTCGAATGGTATGATACATTTTGGTTGCCCCTGGGTGCATGGCATAAGCCGAGATATGTGCTTCATCAAGAATTTCCTTCCTCAAATCCGCATTACTAGGCACGAACATTCTACCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.83

Weight (kDa)

9.89

Isoelectric Point (pI)

50.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 193
Acc36I ACCTGC 2 cut(s) 174, 193
AccII CGCG 1 cut(s) 64
AciI CCGC 3 cut(s) 64, 124, 325
AcoI YGGCCR 1 cut(s) 221
AcsI RAATTY 1 cut(s) 307
AdeI CACNNNGTG 1 cut(s) 57
AfaI GTAC 2 cut(s) 61, 75
AjnI CCWGG 1 cut(s) 266
AoxI GGCC 1 cut(s) 221
ApeKI GCWGC 1 cut(s) 127
ApoI RAATTY 1 cut(s) 307
AsuC2I CCSGG 1 cut(s) 220
AsuHPI GGTGA 1 cut(s) 23
BbvI GCAGC 1 cut(s) 114
BceAI ACGGC 2 cut(s) 26, 158
BcgI CGANNNNNNTGC 2 cut(s) 276, 310
BciT130I CCWGG 1 cut(s) 268
BcnI CCSGG 1 cut(s) 220
BfaI CTAG 2 cut(s) 54, 333
BfuAI ACCTGC 2 cut(s) 174, 193
BisI GCNGC 3 cut(s) 65, 125, 128
BlsI GCNGC 3 cut(s) 66, 126, 129
Bme1390I CCNGG 2 cut(s) 220, 268
BmrFI CCNGG 2 cut(s) 220, 268
BpuMI CCSGG 1 cut(s) 220
BsaJI CCNNGG 2 cut(s) 266, 267
BseBI CCWGG 1 cut(s) 268
BseDI CCNNGG 2 cut(s) 266, 267
BseXI GCAGC 1 cut(s) 114
Bsh1236I CGCG 1 cut(s) 64
BshFI GGCC 1 cut(s) 223
BsiSI CCGG 1 cut(s) 220
BsnI GGCC 1 cut(s) 223
Bsp1407I TGTACA 1 cut(s) 73
Bsp143I GATC 2 cut(s) 21, 28
BspACI CCGC 3 cut(s) 64, 124, 325
BspANI GGCC 1 cut(s) 223
BspFNI CGCG 1 cut(s) 64
BspMI ACCTGC 2 cut(s) 174, 193
BsrGI TGTACA 1 cut(s) 73
BssECI CCNNGG 2 cut(s) 266, 267
BssMI GATC 2 cut(s) 21, 28
Bst2UI CCWGG 1 cut(s) 268
BstAUI TGTACA 1 cut(s) 73
BstDEI CTNAG 1 cut(s) 11
BstFNI CGCG 1 cut(s) 64
BstKTI GATC 2 cut(s) 24, 31
BstMBI GATC 2 cut(s) 21, 28
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstNI CCWGG 1 cut(s) 268
BstSCI CCNGG 2 cut(s) 218, 266
BstUI CGCG 1 cut(s) 64
BstV1I GCAGC 1 cut(s) 114
BsuRI GGCC 1 cut(s) 223
BveI ACCTGC 2 cut(s) 174, 193
Csp6I GTAC 2 cut(s) 60, 74
CviAII CATG 1 cut(s) 275
CviJI RGCY 7 cut(s) 19, 50, 127, 145, 201, 223, 285
CviKI_1 RGCY 7 cut(s) 19, 50, 127, 145, 201, 223, 285
CviQI GTAC 2 cut(s) 60, 74
DdeI CTNAG 1 cut(s) 11
DpnI GATC 2 cut(s) 23, 30
DpnII GATC 2 cut(s) 21, 28
DraIII CACNNNGTG 1 cut(s) 57
EaeI YGGCCR 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 266
FaeI CATG 1 cut(s) 278
FaiI YATR 7 cut(s) 87, 194, 216, 248, 276, 281, 293
FatI CATG 1 cut(s) 274
Fnu4HI GCNGC 3 cut(s) 65, 125, 128
Fsp4HI GCNGC 3 cut(s) 65, 125, 128
FspBI CTAG 2 cut(s) 54, 333
GluI GCNGC 3 cut(s) 65, 125, 128
HaeIII GGCC 1 cut(s) 223
HapII CCGG 1 cut(s) 220
Hin1II CATG 1 cut(s) 278
HpaII CCGG 1 cut(s) 220
HphI GGTGA 1 cut(s) 23
Hpy166II GTNNAC 2 cut(s) 60, 76
Hpy188III TCNNGA 2 cut(s) 112, 304
Hpy8I GTNNAC 2 cut(s) 60, 76
HpyAV CCTTC 1 cut(s) 323
HpyCH4V TGCA 2 cut(s) 130, 274
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpyF3I CTNAG 1 cut(s) 11
Hsp92II CATG 1 cut(s) 278
Kzo9I GATC 2 cut(s) 21, 28
LpnPI CCDG 6 cut(s) 97, 179, 198, 233, 253, 280
Lsp1109I GCAGC 1 cut(s) 114
MaeI CTAG 2 cut(s) 54, 333
MalI GATC 2 cut(s) 23, 30
MboI GATC 2 cut(s) 21, 28
MluCI AATT 1 cut(s) 307
MnlI CCTC 1 cut(s) 327
MseI TTAA 1 cut(s) 162
MslI CAYNNNNRTG 1 cut(s) 36
MspI CCGG 1 cut(s) 220
MspR9I CCNGG 2 cut(s) 220, 268
MvaI CCWGG 1 cut(s) 268
MvnI CGCG 1 cut(s) 64
MwoI GCNNNNNNNGC 1 cut(s) 47
NciI CCSGG 1 cut(s) 220
NdeII GATC 2 cut(s) 21, 28
NlaIII CATG 1 cut(s) 278
NmeAIII GCCGAG 2 cut(s) 177, 311
PaqCI CACCTGC 1 cut(s) 193
PasI CCCWGGG 1 cut(s) 267
PkrI GCNGC 3 cut(s) 66, 126, 129
Psp6I CCWGG 1 cut(s) 266
PspGI CCWGG 1 cut(s) 266
RsaI GTAC 2 cut(s) 61, 75
RsaNI GTAC 2 cut(s) 60, 74
RseI CAYNNNNRTG 1 cut(s) 36
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 3 cut(s) 65, 125, 128
Sau3AI GATC 2 cut(s) 21, 28
ScrFI CCNGG 2 cut(s) 220, 268
SetI ASST 3 cut(s) 59, 168, 187
SmiMI CAYNNNNRTG 1 cut(s) 36
Sse9I AATT 1 cut(s) 307
SsiI CCGC 3 cut(s) 64, 124, 325
SspMI CTAG 2 cut(s) 54, 333
StyD4I CCNGG 2 cut(s) 218, 266
TaqI TCGA 1 cut(s) 239
TasI AATT 1 cut(s) 307
TatI WGTACW 1 cut(s) 73
TauI GCSGC 2 cut(s) 67, 127
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TseI GCWGC 1 cut(s) 127
TspDTI ATGAA 1 cut(s) 289
XapI RAATTY 1 cut(s) 307
XcmI CCANNNNNNNNNTGG 2 cut(s) 108, 231
XspI CTAG 2 cut(s) 54, 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.