pycom15g30270

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0002049
Physical Location & Seq
Reverse (-)
27664445 .. 27664801
357 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g30270.1

Sequence Viewer

Length: 357 bp
ATGTGCCGATTTAGTGAGCCGATCAACGATCACCCAAATGCCATCAAAGCCATTATGTGTACGCGGCAACTTGTACACAAAATCCATAGTGATATTTTCCCATTTCCACTCTGGAACGGGAAGCGGCTGCAACAATCCAAACGGCTTCTTTCTTTCTGCTTTAACCTGCTGACAAACAGCGCAACTGCTCACATACTCAGCTATCTCCCTTTTCATACCCGGCCAATAGTAAAATGGTCGAATGGTATGATACATTTTAGTTGCCCCTGGGTGCATGGCATAAGCCGAGATATGTGCTTCATCGAGAATTTCCTTCTTCAATTCCACATTACTAGGCACGAACATTCTACCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.91

Weight (kDa)

9.45

Isoelectric Point (pI)

56.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 174
AccII CGCG 1 cut(s) 64
AciI CCGC 2 cut(s) 64, 124
AcoI YGGCCR 1 cut(s) 221
AcsI RAATTY 1 cut(s) 307
AfaI GTAC 2 cut(s) 61, 75
AgsI TTSAA 1 cut(s) 320
AjnI CCWGG 1 cut(s) 266
AluBI AGCT 1 cut(s) 201
AluI AGCT 1 cut(s) 201
AoxI GGCC 1 cut(s) 221
ApeKI GCWGC 1 cut(s) 127
ApoI RAATTY 1 cut(s) 307
AspLEI GCGC 1 cut(s) 182
AsuC2I CCSGG 1 cut(s) 220
AsuHPI GGTGA 1 cut(s) 23
BbvI GCAGC 1 cut(s) 114
BccI CCATC 1 cut(s) 50
BceAI ACGGC 1 cut(s) 158
BcgI CGANNNNNNTGC 2 cut(s) 276, 310
BciT130I CCWGG 1 cut(s) 268
BcnI CCSGG 1 cut(s) 220
BfaI CTAG 1 cut(s) 333
BfuAI ACCTGC 1 cut(s) 174
BisI GCNGC 3 cut(s) 65, 125, 128
BlsI GCNGC 3 cut(s) 66, 126, 129
Bme1390I CCNGG 2 cut(s) 220, 268
BmrFI CCNGG 2 cut(s) 220, 268
BpuMI CCSGG 1 cut(s) 220
BsaJI CCNNGG 2 cut(s) 266, 267
BseBI CCWGG 1 cut(s) 268
BseDI CCNNGG 2 cut(s) 266, 267
BseMII CTCAG 1 cut(s) 211
BseXI GCAGC 1 cut(s) 114
Bsh1236I CGCG 1 cut(s) 64
BshFI GGCC 1 cut(s) 223
BsiSI CCGG 1 cut(s) 220
BsnI GGCC 1 cut(s) 223
Bsp1407I TGTACA 1 cut(s) 73
Bsp143I GATC 2 cut(s) 21, 28
BspACI CCGC 2 cut(s) 64, 124
BspANI GGCC 1 cut(s) 223
BspCNI CTCAG 1 cut(s) 210
BspFNI CGCG 1 cut(s) 64
BspMI ACCTGC 1 cut(s) 174
BsrGI TGTACA 1 cut(s) 73
BssECI CCNNGG 2 cut(s) 266, 267
BssMI GATC 2 cut(s) 21, 28
Bst2UI CCWGG 1 cut(s) 268
BstAUI TGTACA 1 cut(s) 73
BstDEI CTNAG 1 cut(s) 197
BstFNI CGCG 1 cut(s) 64
BstHHI GCGC 1 cut(s) 182
BstKTI GATC 2 cut(s) 24, 31
BstMBI GATC 2 cut(s) 21, 28
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstNI CCWGG 1 cut(s) 268
BstSCI CCNGG 2 cut(s) 218, 266
BstUI CGCG 1 cut(s) 64
BstV1I GCAGC 1 cut(s) 114
BsuRI GGCC 1 cut(s) 223
BveI ACCTGC 1 cut(s) 174
CfoI GCGC 1 cut(s) 182
Csp6I GTAC 2 cut(s) 60, 74
CviAII CATG 1 cut(s) 275
CviJI RGCY 7 cut(s) 19, 50, 127, 145, 201, 223, 285
CviKI_1 RGCY 7 cut(s) 19, 50, 127, 145, 201, 223, 285
CviQI GTAC 2 cut(s) 60, 74
DdeI CTNAG 1 cut(s) 197
DpnI GATC 2 cut(s) 23, 30
DpnII GATC 2 cut(s) 21, 28
EaeI YGGCCR 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 266
FaeI CATG 1 cut(s) 278
FaiI YATR 8 cut(s) 56, 87, 194, 216, 248, 276, 281, 293
FatI CATG 1 cut(s) 274
Fnu4HI GCNGC 3 cut(s) 65, 125, 128
Fsp4HI GCNGC 3 cut(s) 65, 125, 128
FspBI CTAG 1 cut(s) 333
GlaI GCGC 1 cut(s) 181
GluI GCNGC 3 cut(s) 65, 125, 128
HaeIII GGCC 1 cut(s) 223
HapII CCGG 1 cut(s) 220
HhaI GCGC 1 cut(s) 182
Hin1II CATG 1 cut(s) 278
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HpaII CCGG 1 cut(s) 220
HphI GGTGA 1 cut(s) 23
Hpy166II GTNNAC 2 cut(s) 60, 76
Hpy188III TCNNGA 2 cut(s) 112, 304
Hpy8I GTNNAC 2 cut(s) 60, 76
HpyAV CCTTC 1 cut(s) 323
HpyCH4V TGCA 2 cut(s) 130, 274
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpyF3I CTNAG 1 cut(s) 197
Hsp92II CATG 1 cut(s) 278
HspAI GCGC 1 cut(s) 180
Kzo9I GATC 2 cut(s) 21, 28
LpnPI CCDG 5 cut(s) 97, 179, 233, 253, 280
Lsp1109I GCAGC 1 cut(s) 114
MaeI CTAG 1 cut(s) 333
MalI GATC 2 cut(s) 23, 30
MboI GATC 2 cut(s) 21, 28
MboII GAAGA 1 cut(s) 308
MluCI AATT 2 cut(s) 307, 320
MseI TTAA 1 cut(s) 162
MslI CAYNNNNRTG 1 cut(s) 36
MspI CCGG 1 cut(s) 220
MspR9I CCNGG 2 cut(s) 220, 268
MvaI CCWGG 1 cut(s) 268
MvnI CGCG 1 cut(s) 64
MwoI GCNNNNNNNGC 1 cut(s) 47
NciI CCSGG 1 cut(s) 220
NdeII GATC 2 cut(s) 21, 28
NlaIII CATG 1 cut(s) 278
NmeAIII GCCGAG 1 cut(s) 311
PasI CCCWGGG 1 cut(s) 267
PkrI GCNGC 3 cut(s) 66, 126, 129
Psp6I CCWGG 1 cut(s) 266
PspGI CCWGG 1 cut(s) 266
RsaI GTAC 2 cut(s) 61, 75
RsaNI GTAC 2 cut(s) 60, 74
RseI CAYNNNNRTG 1 cut(s) 36
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 3 cut(s) 65, 125, 128
Sau3AI GATC 2 cut(s) 21, 28
ScrFI CCNGG 2 cut(s) 220, 268
SetI ASST 2 cut(s) 168, 203
SmiMI CAYNNNNRTG 1 cut(s) 36
Sse9I AATT 2 cut(s) 307, 320
SsiI CCGC 2 cut(s) 64, 124
SspMI CTAG 1 cut(s) 333
StyD4I CCNGG 2 cut(s) 218, 266
TaqI TCGA 2 cut(s) 239, 303
TasI AATT 2 cut(s) 307, 320
TatI WGTACW 1 cut(s) 73
TauI GCSGC 2 cut(s) 67, 127
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TseI GCWGC 1 cut(s) 127
TspDTI ATGAA 2 cut(s) 203, 289
XapI RAATTY 1 cut(s) 307
XcmI CCANNNNNNNNNTGG 2 cut(s) 108, 231
XspI CTAG 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.