pycom15g35580

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0002049
Physical Location & Seq
Forward (+)
35633926 .. 35637241
3316 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g35580.2

Sequence Viewer

Length: 297 bp
ATGTCGAACATGCTCCGCTTTGGACTTAGAATACACCAGAATATCGTCAATGAAGACAATAACAAATCTATCCAGGTAAGGCTGGAACACTCGGTTCATCAAATCCATGAAGGCAGCTGGTGCATTCGTCAACCCAGATGGCATAACCAGAAACTCGTAATGACCATAACGAGTCCTGAACGCCGTCTTAGGGACATCGTCCCTACTGATCTTCAGCTGATACATACCCTAAAGTGCTACGATCACGTGAAGACTGGGCGAATAATCGCGGGTCACCTACGAGTCGGAACCACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.54

Weight (kDa)

10.17

Isoelectric Point (pI)

58.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 269
AciI CCGC 2 cut(s) 16, 269
AcuI CTGAAG 1 cut(s) 197
AcvI CACGTG 1 cut(s) 247
AfiI CCNNNNNNNGG 1 cut(s) 190
AjnI CCWGG 1 cut(s) 72
AluBI AGCT 2 cut(s) 117, 217
AluI AGCT 2 cut(s) 117, 217
ApeKI GCWGC 1 cut(s) 114
AsuHPI GGTGA 1 cut(s) 266
BbrPI CACGTG 1 cut(s) 247
BbsI GAAGAC 2 cut(s) 60, 257
BbvI GCAGC 1 cut(s) 126
BccI CCATC 1 cut(s) 132
BceAI ACGGC 1 cut(s) 168
BciT130I CCWGG 1 cut(s) 74
BisI GCNGC 1 cut(s) 115
BlsI GCNGC 1 cut(s) 116
Bme1390I CCNGG 1 cut(s) 74
BmiI GGNNCC 1 cut(s) 289
BmrFI CCNGG 1 cut(s) 74
BmrI ACTGGG 1 cut(s) 264
BmuI ACTGGG 1 cut(s) 264
BpiI GAAGAC 2 cut(s) 60, 257
BsaAI YACGTR 1 cut(s) 247
Bsc4I CCNNNNNNNGG 1 cut(s) 190
Bse1I ACTGG 1 cut(s) 259
BseBI CCWGG 1 cut(s) 74
BseLI CCNNNNNNNGG 1 cut(s) 190
BseNI ACTGG 1 cut(s) 259
BseXI GCAGC 1 cut(s) 126
Bsh1236I CGCG 1 cut(s) 269
BslFI GGGAC 2 cut(s) 185, 206
BslI CCNNNNNNNGG 1 cut(s) 190
BsmFI GGGAC 2 cut(s) 185, 206
BsmI GAATGC 1 cut(s) 123
Bsp143I GATC 2 cut(s) 208, 241
BspACI CCGC 2 cut(s) 16, 269
BspFNI CGCG 1 cut(s) 269
BspLI GGNNCC 1 cut(s) 289
BsrI ACTGG 1 cut(s) 259
BssMI GATC 2 cut(s) 208, 241
Bst2UI CCWGG 1 cut(s) 74
BstAPI GCANNNNNTGC 1 cut(s) 120
BstBAI YACGTR 1 cut(s) 247
BstDEI CTNAG 2 cut(s) 26, 188
BstEII GGTNACC 1 cut(s) 272
BstFNI CGCG 1 cut(s) 269
BstKTI GATC 2 cut(s) 211, 244
BstMBI GATC 2 cut(s) 208, 241
BstMWI GCNNNNNNNGC 1 cut(s) 120
BstNI CCWGG 1 cut(s) 74
BstNSI RCATGY 1 cut(s) 13
BstPI GGTNACC 1 cut(s) 272
BstSCI CCNGG 1 cut(s) 72
BstUI CGCG 1 cut(s) 269
BstV1I GCAGC 1 cut(s) 126
BstV2I GAAGAC 2 cut(s) 60, 257
CviAII CATG 2 cut(s) 10, 107
CviJI RGCY 3 cut(s) 82, 117, 217
CviKI_1 RGCY 3 cut(s) 82, 117, 217
DdeI CTNAG 2 cut(s) 26, 188
DpnI GATC 2 cut(s) 210, 243
DpnII GATC 2 cut(s) 208, 241
Eco57I CTGAAG 1 cut(s) 197
Eco72I CACGTG 1 cut(s) 247
Eco91I GGTNACC 1 cut(s) 272
EcoO65I GGTNACC 1 cut(s) 272
EcoRII CCWGG 1 cut(s) 72
FaeI CATG 2 cut(s) 13, 110
FaiI YATR 5 cut(s) 11, 108, 144, 167, 225
FaqI GGGAC 2 cut(s) 185, 206
FatI CATG 2 cut(s) 9, 106
FauI CCCGC 1 cut(s) 262
Fnu4HI GCNGC 1 cut(s) 115
Fsp4HI GCNGC 1 cut(s) 115
GluI GCNGC 1 cut(s) 115
Hin1II CATG 2 cut(s) 13, 110
HincII GTYRAC 1 cut(s) 131
HindII GTYRAC 1 cut(s) 131
HinfI GANTC 2 cut(s) 172, 282
HphI GGTGA 1 cut(s) 266
Hpy166II GTNNAC 1 cut(s) 131
Hpy188I TCNGA 1 cut(s) 287
Hpy188III TCNNGA 1 cut(s) 176
Hpy8I GTNNAC 1 cut(s) 131
HpyAV CCTTC 1 cut(s) 104
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 1 cut(s) 123
HpyF10VI GCNNNNNNNGC 1 cut(s) 120
HpyF3I CTNAG 2 cut(s) 26, 188
HpySE526I ACGT 1 cut(s) 246
Hsp92II CATG 2 cut(s) 13, 110
Kzo9I GATC 2 cut(s) 208, 241
LmnI GCTCC 1 cut(s) 18
LpnPI CCDG 9 cut(s) 50, 59, 68, 86, 103, 148, 161, 189, 240
Lsp1109I GCAGC 1 cut(s) 126
MaeII ACGT 1 cut(s) 246
MaeIII GTNAC 1 cut(s) 272
MalI GATC 2 cut(s) 210, 243
MboI GATC 2 cut(s) 208, 241
MboII GAAGA 3 cut(s) 65, 203, 262
MlyI GAGTC 2 cut(s) 181, 291
MmeI TCCRAC 1 cut(s) 265
MspA1I CMGCKG 2 cut(s) 117, 217
MspR9I CCNGG 1 cut(s) 74
Mva1269I GAATGC 1 cut(s) 123
MvaI CCWGG 1 cut(s) 74
MvnI CGCG 1 cut(s) 269
MwoI GCNNNNNNNGC 1 cut(s) 120
NdeII GATC 2 cut(s) 208, 241
NlaIII CATG 2 cut(s) 13, 110
NlaIV GGNNCC 1 cut(s) 289
NmuCI GTSAC 1 cut(s) 272
NspI RCATGY 1 cut(s) 13
PctI GAATGC 1 cut(s) 123
PflFI GACNNNGTC 1 cut(s) 197
PkrI GCNGC 1 cut(s) 116
PleI GAGTC 2 cut(s) 180, 290
PmaCI CACGTG 1 cut(s) 247
PmlI CACGTG 1 cut(s) 247
PpsI GAGTC 2 cut(s) 180, 290
Ppu21I YACGTR 1 cut(s) 247
Psp6I CCWGG 1 cut(s) 72
PspCI CACGTG 1 cut(s) 247
PspEI GGTNACC 1 cut(s) 272
PspGI CCWGG 1 cut(s) 72
PspN4I GGNNCC 1 cut(s) 289
PsyI GACNNNGTC 1 cut(s) 197
PvuII CAGCTG 2 cut(s) 117, 217
SatI GCNGC 1 cut(s) 115
Sau3AI GATC 2 cut(s) 208, 241
SchI GAGTC 2 cut(s) 181, 291
ScrFI CCNGG 1 cut(s) 74
SetI ASST 6 cut(s) 78, 119, 219, 249, 279, 296
SsiI CCGC 2 cut(s) 16, 269
StyD4I CCNGG 1 cut(s) 72
TaiI ACGT 1 cut(s) 249
TaqI TCGA 1 cut(s) 5
TseFI GTSAC 1 cut(s) 272
TseI GCWGC 1 cut(s) 114
Tsp45I GTSAC 1 cut(s) 272
TspDTI ATGAA 3 cut(s) 66, 86, 123
Tth111I GACNNNGTC 1 cut(s) 197
XceI RCATGY 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.