pycom16g01960

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
1229340 .. 1232634
3295 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g01960.2

Sequence Viewer

Length: 276 bp
ATGTCGAACATGCTCCGCTTTCGACTTAGAATACACCAGAATATCGTCAATGAAGACAATGACAAATCTATCCAAGTAAGGCTGGAATACTCGGTTCATCAAATCCATAAAGGCGGCTGGTGCATTCGTCAACCCAAATGGCATAACCAGAAACTCGTAATGACCGTAACGAGTCCTGAATGCCGTCTTAGGGACATCATCCCTACTGATCTTCAGCTGATAGTGGTCTGTACGACAGGCCTGGGTGTAACATATATATACGCTCTAGTGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.66

Weight (kDa)

9.25

Isoelectric Point (pI)

57.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 16, 114
AcuI CTGAAG 1 cut(s) 197
AfaI GTAC 1 cut(s) 232
AfiI CCNNNNNNNGG 1 cut(s) 190
AjnI CCWGG 1 cut(s) 240
AluBI AGCT 1 cut(s) 217
AluI AGCT 1 cut(s) 217
AoxI GGCC 1 cut(s) 238
BbsI GAAGAC 1 cut(s) 60
BceAI ACGGC 1 cut(s) 168
BciT130I CCWGG 1 cut(s) 242
BfaI CTAG 1 cut(s) 266
BisI GCNGC 1 cut(s) 115
BlsI GCNGC 1 cut(s) 116
Bme1390I CCNGG 1 cut(s) 242
BmrFI CCNGG 1 cut(s) 242
BpiI GAAGAC 1 cut(s) 60
BsaJI CCNNGG 1 cut(s) 241
Bsc4I CCNNNNNNNGG 1 cut(s) 190
BseBI CCWGG 1 cut(s) 242
BseDI CCNNGG 1 cut(s) 241
BseGI GGATG 1 cut(s) 198
BseLI CCNNNNNNNGG 1 cut(s) 190
BshFI GGCC 1 cut(s) 240
BslFI GGGAC 1 cut(s) 206
BslI CCNNNNNNNGG 1 cut(s) 190
BsmFI GGGAC 1 cut(s) 206
BsmI GAATGC 2 cut(s) 123, 185
BsnI GGCC 1 cut(s) 240
Bsp143I GATC 1 cut(s) 208
BspACI CCGC 2 cut(s) 16, 114
BspANI GGCC 1 cut(s) 240
BssECI CCNNGG 1 cut(s) 241
BssMI GATC 1 cut(s) 208
Bst2UI CCWGG 1 cut(s) 242
Bst4CI ACNGT 1 cut(s) 166
BstDEI CTNAG 2 cut(s) 26, 188
BstF5I GGATG 1 cut(s) 198
BstKTI GATC 1 cut(s) 211
BstMBI GATC 1 cut(s) 208
BstMWI GCNNNNNNNGC 1 cut(s) 120
BstNI CCWGG 1 cut(s) 242
BstNSI RCATGY 1 cut(s) 13
BstSCI CCNGG 1 cut(s) 240
BstV2I GAAGAC 1 cut(s) 60
BsuRI GGCC 1 cut(s) 240
BtsCI GGATG 1 cut(s) 198
Csp6I GTAC 1 cut(s) 231
CviAII CATG 1 cut(s) 10
CviJI RGCY 4 cut(s) 82, 117, 217, 240
CviKI_1 RGCY 4 cut(s) 82, 117, 217, 240
CviQI GTAC 1 cut(s) 231
DdeI CTNAG 2 cut(s) 26, 188
DpnI GATC 1 cut(s) 210
DpnII GATC 1 cut(s) 208
Eco147I AGGCCT 1 cut(s) 240
Eco57I CTGAAG 1 cut(s) 197
EcoRII CCWGG 1 cut(s) 240
FaeI CATG 1 cut(s) 13
FaiI YATR 8 cut(s) 11, 108, 144, 253, 255, 257, 259, 274
FaqI GGGAC 1 cut(s) 206
FatI CATG 1 cut(s) 9
Fnu4HI GCNGC 1 cut(s) 115
FokI GGATG 1 cut(s) 185
Fsp4HI GCNGC 1 cut(s) 115
FspBI CTAG 1 cut(s) 266
GluI GCNGC 1 cut(s) 115
HaeIII GGCC 1 cut(s) 240
Hin1II CATG 1 cut(s) 13
HincII GTYRAC 1 cut(s) 131
HindII GTYRAC 1 cut(s) 131
HinfI GANTC 1 cut(s) 172
Hpy166II GTNNAC 1 cut(s) 131
Hpy188III TCNNGA 1 cut(s) 176
Hpy8I GTNNAC 1 cut(s) 131
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4V TGCA 1 cut(s) 123
HpyF10VI GCNNNNNNNGC 1 cut(s) 120
HpyF3I CTNAG 2 cut(s) 26, 188
Hsp92II CATG 1 cut(s) 13
Kzo9I GATC 1 cut(s) 208
LmnI GCTCC 1 cut(s) 18
LpnPI CCDG 8 cut(s) 50, 68, 103, 161, 189, 222, 227, 254
MaeI CTAG 1 cut(s) 266
MaeIII GTNAC 2 cut(s) 166, 247
MalI GATC 1 cut(s) 210
MboI GATC 1 cut(s) 208
MboII GAAGA 2 cut(s) 65, 203
MlyI GAGTC 1 cut(s) 181
MspA1I CMGCKG 1 cut(s) 217
MspR9I CCNGG 1 cut(s) 242
Mva1269I GAATGC 2 cut(s) 123, 185
MvaI CCWGG 1 cut(s) 242
MwoI GCNNNNNNNGC 1 cut(s) 120
NdeII GATC 1 cut(s) 208
NlaIII CATG 1 cut(s) 13
NspI RCATGY 1 cut(s) 13
PceI AGGCCT 1 cut(s) 240
PcsI WCGNNNNNNNCGW 1 cut(s) 162
PctI GAATGC 2 cut(s) 123, 185
PkrI GCNGC 1 cut(s) 116
PleI GAGTC 1 cut(s) 180
PpsI GAGTC 1 cut(s) 180
Psp6I CCWGG 1 cut(s) 240
PspGI CCWGG 1 cut(s) 240
PvuII CAGCTG 1 cut(s) 217
RsaI GTAC 1 cut(s) 232
RsaNI GTAC 1 cut(s) 231
SatI GCNGC 1 cut(s) 115
Sau3AI GATC 1 cut(s) 208
SchI GAGTC 1 cut(s) 181
ScrFI CCNGG 1 cut(s) 242
SetI ASST 1 cut(s) 219
SseBI AGGCCT 1 cut(s) 240
SsiI CCGC 2 cut(s) 16, 114
SspMI CTAG 1 cut(s) 266
StuI AGGCCT 1 cut(s) 240
StyD4I CCNGG 1 cut(s) 240
TaaI ACNGT 1 cut(s) 166
TaqI TCGA 2 cut(s) 5, 22
TauI GCSGC 1 cut(s) 117
TspDTI ATGAA 2 cut(s) 66, 86
XceI RCATGY 1 cut(s) 13
XspI CTAG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.