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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 193, 2214 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2021 |
| Acc16I | TGCGCA | 1 cut(s) | 2659 |
| Acc36I | ACCTGC | 5 cut(s) | 174, 193, 2186, 2214, 2651 |
| AccB1I | GGYRCC | 2 cut(s) | 771, 2618 |
| AccII | CGCG | 2 cut(s) | 64, 1983 |
| AclWI | GGATC | 5 cut(s) | 683, 2098, 2111, 2214, 2223 |
| AcoI | YGGCCR | 3 cut(s) | 221, 748, 2184 |
| AcsI | RAATTY | 3 cut(s) | 307, 932, 2416 |
| AcuI | CTGAAG | 2 cut(s) | 686, 2099 |
| AcvI | CACGTG | 1 cut(s) | 2306 |
| AfaI | GTAC | 7 cut(s) | 61, 75, 510, 1515, 1805, 2681, 2793 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 709, 973, 1039, 2007, 2008, 2158 |
| AflIII | ACRYGT | 2 cut(s) | 2303, 2513 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1319 |
| AjiI | CACGTC | 1 cut(s) | 1545 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 413, 445 |
| AleI | CACNNNNGTG | 1 cut(s) | 990 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1968, 2000 |
| Alw21I | GWGCWC | 2 cut(s) | 1995, 2765 |
| Alw26I | GTCTC | 9 cut(s) | 440, 526, 723, 875, 1551, 1667, 2571, 2642, 2818 |
| AlwI | GGATC | 5 cut(s) | 683, 2098, 2111, 2214, 2223 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2666 |
| Ama87I | CYCGRG | 3 cut(s) | 412, 1576, 2436 |
| AoxI | GGCC | 6 cut(s) | 221, 525, 748, 1939, 2184, 2433 |
| ApeKI | GCWGC | 9 cut(s) | 127, 784, 1026, 1241, 2245, 2257, 2280, 2321, 2780 |
| ApoI | RAATTY | 3 cut(s) | 307, 932, 2416 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 924, 956 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 425 |
| AspLEI | GCGC | 4 cut(s) | 1481, 1934, 2365, 2660 |
| AspS9I | GGNCC | 4 cut(s) | 526, 1940, 2199, 2434 |
| AsuC2I | CCSGG | 4 cut(s) | 220, 854, 1219, 2128 |
| AsuHPI | GGTGA | 8 cut(s) | 589, 832, 977, 1397, 1657, 1671, 2140, 2659 |
| AvaI | CYCGRG | 3 cut(s) | 412, 1576, 2436 |
| AvaII | GGWCC | 1 cut(s) | 2199 |
| BaeGI | GKGCMC | 3 cut(s) | 1077, 1719, 2693 |
| BalI | TGGCCA | 1 cut(s) | 2186 |
| BamHI | GGATCC | 1 cut(s) | 2103 |
| BanI | GGYRCC | 2 cut(s) | 771, 2618 |
| BanII | GRGCYC | 1 cut(s) | 2765 |
| BbrPI | CACGTG | 1 cut(s) | 2306 |
| BbsI | GAAGAC | 2 cut(s) | 674, 2036 |
| Bbv12I | GWGCWC | 2 cut(s) | 1995, 2765 |
| BbvI | GCAGC | 9 cut(s) | 114, 771, 1013, 1253, 2232, 2244, 2292, 2308, 2767 |
| BccI | CCATC | 3 cut(s) | 377, 624, 2301 |
| BceAI | ACGGC | 6 cut(s) | 26, 158, 540, 1642, 2072, 2606 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 276, 310, 1399, 1433 |
| BciVI | GTATCC | 2 cut(s) | 2046, 2106 |
| BcnI | CCSGG | 4 cut(s) | 220, 854, 1219, 2128 |
| BcoDI | GTCTC | 9 cut(s) | 440, 526, 723, 875, 1551, 1667, 2571, 2642, 2818 |
| BfaI | CTAG | 3 cut(s) | 1835, 1863, 2369 |
| BfmI | CTRYAG | 3 cut(s) | 1422, 1911, 2781 |
| BfoI | RGCGCY | 1 cut(s) | 1482 |
| BfuAI | ACCTGC | 5 cut(s) | 174, 193, 2186, 2214, 2651 |
| BfuI | GTATCC | 2 cut(s) | 2046, 2106 |
| BlpI | GCTNAGC | 1 cut(s) | 606 |
| Bme18I | GGWCC | 1 cut(s) | 2199 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1319 |
| BmeT110I | CYCGRG | 3 cut(s) | 412, 1576, 2436 |
| BmgBI | CACGTC | 1 cut(s) | 1545 |
| BmgT120I | GGNCC | 4 cut(s) | 526, 1940, 2199, 2434 |
| BmiI | GGNNCC | 5 cut(s) | 773, 2105, 2201, 2620, 2840 |
| BmrI | ACTGGG | 1 cut(s) | 2017 |
| BmsI | GCATC | 7 cut(s) | 261, 367, 558, 796, 828, 2154, 2597 |
| BmuI | ACTGGG | 1 cut(s) | 2017 |
| BpiI | GAAGAC | 2 cut(s) | 674, 2036 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2798, 2830 |
| BpmI | CTGGAG | 2 cut(s) | 1495, 2068 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1058, 1989 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 606 |
| BpuEI | CTTGAG | 1 cut(s) | 1302 |
| BpuMI | CCSGG | 4 cut(s) | 220, 854, 1219, 2128 |
| Bsa29I | ATCGAT | 2 cut(s) | 1175, 2671 |
| BsaAI | YACGTR | 1 cut(s) | 2306 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2481 |
| BsaI | GGTCTC | 1 cut(s) | 440 |
| BsaJI | CCNNGG | 9 cut(s) | 573, 972, 1233, 1484, 1575, 1799, 1936, 2151, 2202 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 993, 1023 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 709, 973, 1039, 2007, 2008, 2158 |
| Bse118I | RCCGGY | 2 cut(s) | 19, 2347 |
| Bse1I | ACTGG | 7 cut(s) | 508, 1478, 1795, 2012, 2051, 2217, 2405 |
| Bse3DI | GCAATG | 2 cut(s) | 1388, 2316 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2481 |
| BseCI | ATCGAT | 2 cut(s) | 1175, 2671 |
| BseDI | CCNNGG | 9 cut(s) | 573, 972, 1233, 1484, 1575, 1799, 1936, 2151, 2202 |
| BseGI | GGATG | 9 cut(s) | 276, 369, 616, 797, 849, 921, 1613, 1795, 1906 |
| BseJI | GATNNNNATC | 1 cut(s) | 2481 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 709, 973, 1039, 2007, 2008, 2158 |
| BseMI | GCAATG | 2 cut(s) | 1388, 2316 |
| BseNI | ACTGG | 7 cut(s) | 508, 1478, 1795, 2012, 2051, 2217, 2405 |
| BseRI | GAGGAG | 3 cut(s) | 939, 1821, 2690 |
| BseSI | GKGCMC | 3 cut(s) | 1077, 1719, 2693 |
| BseXI | GCAGC | 9 cut(s) | 114, 771, 1013, 1253, 2232, 2244, 2292, 2308, 2767 |
| BsgI | GTGCAG | 2 cut(s) | 2021, 2242 |
| Bsh1236I | CGCG | 2 cut(s) | 64, 1983 |
| BshFI | GGCC | 6 cut(s) | 223, 527, 750, 1941, 2186, 2435 |
| BshNI | GGYRCC | 2 cut(s) | 771, 2618 |
| BshVI | ATCGAT | 2 cut(s) | 1175, 2671 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1995, 2765 |
| BsiHKCI | CYCGRG | 3 cut(s) | 412, 1576, 2436 |
| BsiSI | CCGG | 7 cut(s) | 20, 220, 853, 1219, 2128, 2348, 2597 |
| BslFI | GGGAC | 6 cut(s) | 1970, 2110, 2153, 2275, 2382, 2710 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 709, 973, 1039, 2007, 2008, 2158 |
| BsmAI | GTCTC | 9 cut(s) | 440, 526, 723, 875, 1551, 1667, 2571, 2642, 2818 |
| BsmBI | CGTCTC | 2 cut(s) | 1551, 2818 |
| BsmFI | GGGAC | 6 cut(s) | 1970, 2110, 2153, 2275, 2382, 2710 |
| BsmI | GAATGC | 2 cut(s) | 1250, 1934 |
| BsnI | GGCC | 6 cut(s) | 223, 527, 750, 1941, 2186, 2435 |
| Bso31I | GGTCTC | 1 cut(s) | 440 |
| BsoBI | CYCGRG | 3 cut(s) | 412, 1576, 2436 |
| Bsp1286I | GDGCHC | 5 cut(s) | 1077, 1719, 1995, 2693, 2765 |
| Bsp1407I | TGTACA | 1 cut(s) | 73 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 606 |
| Bsp19I | CCATGG | 1 cut(s) | 1233 |
| BspANI | GGCC | 6 cut(s) | 223, 527, 750, 1941, 2186, 2435 |
| BspDI | ATCGAT | 2 cut(s) | 1175, 2671 |
| BspFNI | CGCG | 2 cut(s) | 64, 1983 |
| BspLI | GGNNCC | 5 cut(s) | 773, 2105, 2201, 2620, 2840 |
| BspMAI | CTGCAG | 2 cut(s) | 1915, 2785 |
| BspMI | ACCTGC | 5 cut(s) | 174, 193, 2186, 2214, 2651 |
| BspPI | GGATC | 5 cut(s) | 683, 2098, 2111, 2214, 2223 |
| BspT107I | GGYRCC | 2 cut(s) | 771, 2618 |
| BspTNI | GGTCTC | 1 cut(s) | 440 |
| BsrDI | GCAATG | 2 cut(s) | 1388, 2316 |
| BsrFI | RCCGGY | 2 cut(s) | 19, 2347 |
| BsrGI | TGTACA | 1 cut(s) | 73 |
| BsrI | ACTGG | 7 cut(s) | 508, 1478, 1795, 2012, 2051, 2217, 2405 |
| BssAI | RCCGGY | 2 cut(s) | 19, 2347 |
| BssECI | CCNNGG | 9 cut(s) | 573, 972, 1233, 1484, 1575, 1799, 1936, 2151, 2202 |
| BssT1I | CCWWGG | 3 cut(s) | 972, 1233, 1484 |
| Bst4CI | ACNGT | 5 cut(s) | 998, 1005, 1393, 2023, 2124 |
| Bst6I | CTCTTC | 3 cut(s) | 216, 1115, 1486 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1247, 2318 |
| BstAUI | TGTACA | 1 cut(s) | 73 |
| BstBAI | YACGTR | 1 cut(s) | 2306 |
| BstC8I | GCNNGC | 1 cut(s) | 1970 |
| BstDSI | CCRYGG | 1 cut(s) | 1233 |
| BstF5I | GGATG | 9 cut(s) | 276, 369, 616, 797, 849, 921, 1613, 1795, 1906 |
| BstFNI | CGCG | 2 cut(s) | 64, 1983 |
| BstH2I | RGCGCY | 1 cut(s) | 1482 |
| BstHHI | GCGC | 4 cut(s) | 1481, 1934, 2365, 2660 |
| BstMAI | GTCTC | 9 cut(s) | 440, 526, 723, 875, 1551, 1667, 2571, 2642, 2818 |
| BstNSI | RCATGY | 3 cut(s) | 368, 1140, 2517 |
| BstSFI | CTRYAG | 3 cut(s) | 1422, 1911, 2781 |
| BstSLI | GKGCMC | 3 cut(s) | 1077, 1719, 2693 |
| BstUI | CGCG | 2 cut(s) | 64, 1983 |
| BstV1I | GCAGC | 9 cut(s) | 114, 771, 1013, 1253, 2232, 2244, 2292, 2308, 2767 |
| BstV2I | GAAGAC | 2 cut(s) | 674, 2036 |
| BstX2I | RGATCY | 2 cut(s) | 2103, 2206 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1092 |
| BstYI | RGATCY | 2 cut(s) | 2103, 2206 |
| Bsu15I | ATCGAT | 2 cut(s) | 1175, 2671 |
| BsuI | GTATCC | 2 cut(s) | 2046, 2106 |
| BsuRI | GGCC | 6 cut(s) | 223, 527, 750, 1941, 2186, 2435 |
| BsuTUI | ATCGAT | 2 cut(s) | 1175, 2671 |
| BtgI | CCRYGG | 1 cut(s) | 1233 |
| BtgZI | GCGATG | 1 cut(s) | 805 |
| BtrI | CACGTC | 1 cut(s) | 1545 |
| BtsCI | GGATG | 9 cut(s) | 276, 369, 616, 797, 849, 921, 1613, 1795, 1906 |
| BtsI | GCAGTG | 1 cut(s) | 2038 |
| BtsIMutI | CAGTG | 6 cut(s) | 997, 1719, 1788, 2038, 2411, 2412 |
| BveI | ACCTGC | 5 cut(s) | 174, 193, 2186, 2214, 2651 |
| Cac8I | GCNNGC | 1 cut(s) | 1970 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2666 |
| CfoI | GCGC | 4 cut(s) | 1481, 1934, 2365, 2660 |
| Cfr10I | RCCGGY | 2 cut(s) | 19, 2347 |
| Cfr13I | GGNCC | 4 cut(s) | 526, 1940, 2199, 2434 |
| ClaI | ATCGAT | 2 cut(s) | 1175, 2671 |
| CseI | GACGC | 2 cut(s) | 1972, 2452 |
| CsiI | ACCWGGT | 1 cut(s) | 1564 |
| Csp6I | GTAC | 7 cut(s) | 60, 74, 509, 1514, 1804, 2680, 2792 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 545, 580, 609, 644 |
| CviQI | GTAC | 7 cut(s) | 60, 74, 509, 1514, 1804, 2680, 2792 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2021 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1319 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2021 |
| EaeI | YGGCCR | 3 cut(s) | 221, 748, 2184 |
| Eam1104I | CTCTTC | 3 cut(s) | 216, 1115, 1486 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1319 |
| EarI | CTCTTC | 3 cut(s) | 216, 1115, 1486 |
| EciI | GGCGGA | 4 cut(s) | 473, 1132, 1943, 2583 |
| Ecl136II | GAGCTC | 1 cut(s) | 2763 |
| Eco130I | CCWWGG | 3 cut(s) | 972, 1233, 1484 |
| Eco24I | GRGCYC | 1 cut(s) | 2765 |
| Eco31I | GGTCTC | 1 cut(s) | 440 |
| Eco32I | GATATC | 1 cut(s) | 2544 |
| Eco47I | GGWCC | 1 cut(s) | 2199 |
| Eco53kI | GAGCTC | 1 cut(s) | 2763 |
| Eco57I | CTGAAG | 2 cut(s) | 686, 2099 |
| Eco72I | CACGTG | 1 cut(s) | 2306 |
| Eco88I | CYCGRG | 3 cut(s) | 412, 1576, 2436 |
| EcoICRI | GAGCTC | 1 cut(s) | 2763 |
| EcoRV | GATATC | 1 cut(s) | 2544 |
| EcoT14I | CCWWGG | 3 cut(s) | 972, 1233, 1484 |
| EcoT22I | ATGCAT | 1 cut(s) | 276 |
| EcoT38I | GRGCYC | 1 cut(s) | 2765 |
| ErhI | CCWWGG | 3 cut(s) | 972, 1233, 1484 |
| Esp3I | CGTCTC | 2 cut(s) | 1551, 2818 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1311, 1343 |
| FaqI | GGGAC | 6 cut(s) | 1970, 2110, 2153, 2275, 2382, 2710 |
| FauI | CCCGC | 2 cut(s) | 57, 971 |
| FokI | GGATG | 9 cut(s) | 283, 356, 603, 784, 836, 908, 1600, 1782, 1893 |
| FriOI | GRGCYC | 1 cut(s) | 2765 |
| FspBI | CTAG | 3 cut(s) | 1835, 1863, 2369 |
| FspI | TGCGCA | 1 cut(s) | 2659 |
| GlaI | GCGC | 4 cut(s) | 1480, 1933, 2364, 2659 |
| GsuI | CTGGAG | 2 cut(s) | 1495, 2068 |
| HaeII | RGCGCY | 1 cut(s) | 1482 |
| HaeIII | GGCC | 6 cut(s) | 223, 527, 750, 1941, 2186, 2435 |
| HapII | CCGG | 7 cut(s) | 20, 220, 853, 1219, 2128, 2348, 2597 |
| HgaI | GACGC | 2 cut(s) | 1972, 2452 |
| HhaI | GCGC | 4 cut(s) | 1481, 1934, 2365, 2660 |
| Hin6I | GCGC | 4 cut(s) | 1479, 1932, 2363, 2658 |
| HinP1I | GCGC | 4 cut(s) | 1479, 1932, 2363, 2658 |
| HincII | GTYRAC | 5 cut(s) | 25, 630, 1045, 1258, 1737 |
| HindII | GTYRAC | 5 cut(s) | 25, 630, 1045, 1258, 1737 |
| HpaII | CCGG | 7 cut(s) | 20, 220, 853, 1219, 2128, 2348, 2597 |
| HphI | GGTGA | 8 cut(s) | 589, 832, 977, 1397, 1657, 1671, 2140, 2659 |
| Hpy188I | TCNGA | 9 cut(s) | 374, 651, 954, 1038, 1602, 2199, 2476, 2523, 2668 |
| Hpy99I | CGWCG | 3 cut(s) | 2446, 2585, 2760 |
| HpyAV | CCTTC | 6 cut(s) | 411, 633, 656, 1043, 1156, 2829 |
| HpyCH4III | ACNGT | 5 cut(s) | 998, 1005, 1393, 2023, 2124 |
| HpyCH4IV | ACGT | 5 cut(s) | 561, 1544, 2305, 2611, 2723 |
| HpySE526I | ACGT | 5 cut(s) | 561, 1544, 2305, 2611, 2723 |
| HspAI | GCGC | 4 cut(s) | 1479, 1932, 2363, 2658 |
| LmnI | GCTCC | 9 cut(s) | 67, 269, 1014, 1145, 1476, 2130, 2760, 2768, 2774 |
| Lsp1109I | GCAGC | 9 cut(s) | 114, 771, 1013, 1253, 2232, 2244, 2292, 2308, 2767 |
| LweI | GCATC | 7 cut(s) | 261, 367, 558, 796, 828, 2154, 2597 |
| MabI | ACCWGGT | 1 cut(s) | 1564 |
| MaeI | CTAG | 3 cut(s) | 1835, 1863, 2369 |
| MaeII | ACGT | 5 cut(s) | 561, 1544, 2305, 2611, 2723 |
| MaeIII | GTNAC | 4 cut(s) | 992, 1403, 1690, 2353 |
| MfeI | CAATTG | 2 cut(s) | 477, 1415 |
| MflI | RGATCY | 2 cut(s) | 2103, 2206 |
| MhlI | GDGCHC | 5 cut(s) | 1077, 1719, 1995, 2693, 2765 |
| MlsI | TGGCCA | 1 cut(s) | 2186 |
| MluCI | AATT | 8 cut(s) | 307, 477, 932, 1090, 1415, 1893, 2274, 2416 |
| MluNI | TGGCCA | 1 cut(s) | 2186 |
| MlyI | GAGTC | 5 cut(s) | 664, 1894, 2257, 2432, 2780 |
| Mox20I | TGGCCA | 1 cut(s) | 2186 |
| Mph1103I | ATGCAT | 1 cut(s) | 276 |
| MroXI | GAANNNNTTC | 1 cut(s) | 425 |
| MscI | TGGCCA | 1 cut(s) | 2186 |
| MseI | TTAA | 8 cut(s) | 162, 639, 936, 1227, 1398, 1497, 1896, 2537 |
| MslI | CAYNNNNRTG | 3 cut(s) | 363, 990, 1166 |
| Msp20I | TGGCCA | 1 cut(s) | 2186 |
| MspA1I | CMGCKG | 4 cut(s) | 1026, 1244, 2574, 2634 |
| MspI | CCGG | 7 cut(s) | 20, 220, 853, 1219, 2128, 2348, 2597 |
| MunI | CAATTG | 2 cut(s) | 477, 1415 |
| Mva1269I | GAATGC | 2 cut(s) | 1250, 1934 |
| MvnI | CGCG | 2 cut(s) | 64, 1983 |
| NciI | CCSGG | 4 cut(s) | 220, 854, 1219, 2128 |
| NcoI | CCATGG | 1 cut(s) | 1233 |
| NlaIV | GGNNCC | 5 cut(s) | 773, 2105, 2201, 2620, 2840 |
| NmeAIII | GCCGAG | 1 cut(s) | 311 |
| NmuCI | GTSAC | 2 cut(s) | 992, 1403 |
| NsbI | TGCGCA | 1 cut(s) | 2659 |
| NsiI | ATGCAT | 1 cut(s) | 276 |
| NspI | RCATGY | 3 cut(s) | 368, 1140, 2517 |
| OliI | CACNNNNGTG | 1 cut(s) | 990 |
| PaeR7I | CTCGAG | 1 cut(s) | 412 |
| PaqCI | CACCTGC | 2 cut(s) | 193, 2214 |
| PciI | ACATGT | 1 cut(s) | 2513 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1956 |
| PctI | GAATGC | 2 cut(s) | 1250, 1934 |
| PdmI | GAANNNNTTC | 1 cut(s) | 425 |
| PfeI | GAWTC | 5 cut(s) | 375, 421, 1411, 1722, 2524 |
| PfoI | TCCNGGA | 3 cut(s) | 266, 852, 2126 |
| PleI | GAGTC | 5 cut(s) | 664, 1894, 2257, 2431, 2780 |
| PmaCI | CACGTG | 1 cut(s) | 2306 |
| PmlI | CACGTG | 1 cut(s) | 2306 |
| PpsI | GAGTC | 5 cut(s) | 664, 1894, 2257, 2431, 2780 |
| Ppu21I | YACGTR | 1 cut(s) | 2306 |
| PscI | ACATGT | 1 cut(s) | 2513 |
| Psp124BI | GAGCTC | 1 cut(s) | 2765 |
| PspCI | CACGTG | 1 cut(s) | 2306 |
| PspN4I | GGNNCC | 5 cut(s) | 773, 2105, 2201, 2620, 2840 |
| PspPI | GGNCC | 4 cut(s) | 526, 1940, 2199, 2434 |
| PstI | CTGCAG | 2 cut(s) | 1915, 2785 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2666 |
| PsuI | RGATCY | 2 cut(s) | 2103, 2206 |
| PvuII | CAGCTG | 2 cut(s) | 1026, 1244 |
| RsaI | GTAC | 7 cut(s) | 61, 75, 510, 1515, 1805, 2681, 2793 |
| RsaNI | GTAC | 7 cut(s) | 60, 74, 509, 1514, 1804, 2680, 2792 |
| RseI | CAYNNNNRTG | 3 cut(s) | 363, 990, 1166 |
| SacI | GAGCTC | 1 cut(s) | 2765 |
| SaqAI | TTAA | 8 cut(s) | 162, 639, 936, 1227, 1398, 1497, 1896, 2537 |
| Sau96I | GGNCC | 4 cut(s) | 526, 1940, 2199, 2434 |
| SchI | GAGTC | 5 cut(s) | 664, 1894, 2257, 2432, 2780 |
| SduI | GDGCHC | 5 cut(s) | 1077, 1719, 1995, 2693, 2765 |
| SexAI | ACCWGGT | 1 cut(s) | 1564 |
| SfaNI | GCATC | 7 cut(s) | 261, 367, 558, 796, 828, 2154, 2597 |
| SfcI | CTRYAG | 3 cut(s) | 1422, 1911, 2781 |
| Sfr274I | CTCGAG | 1 cut(s) | 412 |
| SinI | GGWCC | 1 cut(s) | 2199 |
| SlaI | CTCGAG | 1 cut(s) | 412 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 363, 990, 1166 |
| SmlI | CTYRAG | 2 cut(s) | 412, 1317 |
| SmoI | CTYRAG | 2 cut(s) | 412, 1317 |
| Sse9I | AATT | 8 cut(s) | 307, 477, 932, 1090, 1415, 1893, 2274, 2416 |
| SspI | AATATT | 1 cut(s) | 1922 |
| SspMI | CTAG | 3 cut(s) | 1835, 1863, 2369 |
| SstI | GAGCTC | 1 cut(s) | 2765 |
| StyI | CCWWGG | 3 cut(s) | 972, 1233, 1484 |
| TaaI | ACNGT | 5 cut(s) | 998, 1005, 1393, 2023, 2124 |
| TaiI | ACGT | 5 cut(s) | 564, 1547, 2308, 2614, 2726 |
| TasI | AATT | 8 cut(s) | 307, 477, 932, 1090, 1415, 1893, 2274, 2416 |
| TatI | WGTACW | 2 cut(s) | 73, 2679 |
| TauI | GCSGC | 3 cut(s) | 127, 750, 2069 |
| TfiI | GAWTC | 5 cut(s) | 375, 421, 1411, 1722, 2524 |
| Tru1I | TTAA | 8 cut(s) | 162, 639, 936, 1227, 1398, 1497, 1896, 2537 |
| Tru9I | TTAA | 8 cut(s) | 162, 639, 936, 1227, 1398, 1497, 1896, 2537 |
| TscAI | CASTG | 6 cut(s) | 997, 1719, 1795, 2045, 2412, 2418 |
| TseFI | GTSAC | 2 cut(s) | 992, 1403 |
| TseI | GCWGC | 9 cut(s) | 127, 784, 1026, 1241, 2245, 2257, 2280, 2321, 2780 |
| Tsp45I | GTSAC | 2 cut(s) | 992, 1403 |
| TspDTI | ATGAA | 5 cut(s) | 203, 289, 1193, 1213, 2250 |
| TspGWI | ACGGA | 3 cut(s) | 1438, 2773, 2779 |
| TspRI | CASTG | 6 cut(s) | 997, 1719, 1795, 2045, 2412, 2418 |
| VpaK11BI | GGWCC | 1 cut(s) | 2199 |
| XapI | RAATTY | 3 cut(s) | 307, 932, 2416 |
| XceI | RCATGY | 3 cut(s) | 368, 1140, 2517 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 108, 231 |
| XhoI | CTCGAG | 1 cut(s) | 412 |
| XmnI | GAANNNNTTC | 1 cut(s) | 425 |
| XspI | CTAG | 3 cut(s) | 1835, 1863, 2369 |
| Zsp2I | ATGCAT | 1 cut(s) | 276 |