pycom12g03890

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Reverse (-)
3745370 .. 3745840
471 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g03890.1

Sequence Viewer

Length: 471 bp
ATGTGGCTTCCTGCTAAGTGCATCGGCTACTACGTTCGCACGACCAGGGTGATAATCAATCGTGCAATCGTAGTCGCTGAGCAACTCCAACCACCTCCGTTGACGAAGATTAAGTTCCTTCTGGGTGAAAAGATACTGAAGACTCTTGTGATCTGTGAAGATCCTACACTTTTCTCCATAAAGATAGTGTCTCCACAACTTCAACGCAAAGATGATAGCAGCCAACTCCAAATCATGTGTAGGGTAATTCATCTCATGGGTTTTCAACTGCCGCGAAGCATAAGCAATCACCCTACCATGCTGCATCAACACACATCCCAGACCATTCAAGGAAGCATCGCTATAAACCTCGAAATCACCACTATCGTCCGGGAGTGCCAAAACAGGTGCATTAGTAAGACAATGCTTCAACTGCTGGAAACTTTGCTCACACTTATCATTCCACTCAAACTTAACATCTTTCCTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

17.81

Weight (kDa)

9.47

Isoelectric Point (pI)

42.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 274
AciI CCGC 1 cut(s) 272
AclWI GGATC 1 cut(s) 155
AcuI CTGAAG 1 cut(s) 158
AgsI TTSAA 4 cut(s) 203, 266, 329, 410
AjnI CCWGG 1 cut(s) 44
Alw26I GTCTC 1 cut(s) 195
AlwI GGATC 1 cut(s) 155
ApeKI GCWGC 2 cut(s) 219, 301
AsuC2I CCSGG 1 cut(s) 371
AsuHPI GGTGA 4 cut(s) 61, 137, 281, 349
BbsI GAAGAC 1 cut(s) 146
BbvI GCAGC 2 cut(s) 231, 288
BciT130I CCWGG 1 cut(s) 46
BcnI CCSGG 1 cut(s) 371
BcoDI GTCTC 1 cut(s) 195
BisI GCNGC 3 cut(s) 220, 272, 302
BlpI GCTNAGC 1 cut(s) 78
BlsI GCNGC 3 cut(s) 221, 273, 303
Bme1390I CCNGG 2 cut(s) 46, 371
BmrFI CCNGG 2 cut(s) 46, 371
BmsI GCATC 3 cut(s) 30, 313, 345
BpiI GAAGAC 1 cut(s) 146
Bpu1102I GCTNAGC 1 cut(s) 78
BpuMI CCSGG 1 cut(s) 371
BsaJI CCNNGG 1 cut(s) 45
BseBI CCWGG 1 cut(s) 46
BseDI CCNNGG 1 cut(s) 45
BseGI GGATG 1 cut(s) 314
BseMII CTCAG 1 cut(s) 69
BseXI GCAGC 2 cut(s) 231, 288
Bsh1236I CGCG 1 cut(s) 274
BsiSI CCGG 1 cut(s) 370
BsmAI GTCTC 1 cut(s) 195
Bsp143I GATC 2 cut(s) 150, 160
Bsp1720I GCTNAGC 1 cut(s) 78
BspACI CCGC 1 cut(s) 272
BspCNI CTCAG 1 cut(s) 70
BspFNI CGCG 1 cut(s) 274
BspPI GGATC 1 cut(s) 155
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 2 cut(s) 150, 160
Bst2UI CCWGG 1 cut(s) 46
BstDEI CTNAG 2 cut(s) 15, 78
BstF5I GGATG 1 cut(s) 314
BstFNI CGCG 1 cut(s) 274
BstKTI GATC 2 cut(s) 153, 163
BstMAI GTCTC 1 cut(s) 195
BstMBI GATC 2 cut(s) 150, 160
BstMWI GCNNNNNNNGC 1 cut(s) 412
BstNI CCWGG 1 cut(s) 46
BstSCI CCNGG 2 cut(s) 44, 369
BstUI CGCG 1 cut(s) 274
BstV1I GCAGC 2 cut(s) 231, 288
BstV2I GAAGAC 1 cut(s) 146
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
BtgZI GCGATG 1 cut(s) 322
BtsCI GGATG 1 cut(s) 314
CspCI CAANNNNNGTGG 2 cut(s) 81, 116
CviAII CATG 3 cut(s) 235, 256, 298
CviJI RGCY 3 cut(s) 7, 27, 222
CviKI_1 RGCY 3 cut(s) 7, 27, 222
DdeI CTNAG 2 cut(s) 15, 78
DpnI GATC 2 cut(s) 152, 162
DpnII GATC 2 cut(s) 150, 160
Eco57I CTGAAG 1 cut(s) 158
EcoRII CCWGG 1 cut(s) 44
FaeI CATG 3 cut(s) 238, 259, 301
FaiI YATR 6 cut(s) 179, 236, 257, 281, 299, 344
FatI CATG 3 cut(s) 234, 255, 297
Fnu4HI GCNGC 3 cut(s) 220, 272, 302
FokI GGATG 1 cut(s) 301
Fsp4HI GCNGC 3 cut(s) 220, 272, 302
GluI GCNGC 3 cut(s) 220, 272, 302
HapII CCGG 1 cut(s) 370
Hin1II CATG 3 cut(s) 238, 259, 301
HincII GTYRAC 1 cut(s) 102
HindII GTYRAC 1 cut(s) 102
HinfI GANTC 1 cut(s) 142
HpaII CCGG 1 cut(s) 370
HphI GGTGA 4 cut(s) 61, 137, 281, 349
Hpy166II GTNNAC 1 cut(s) 102
Hpy8I GTNNAC 1 cut(s) 102
HpyAV CCTTC 1 cut(s) 128
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 4 cut(s) 21, 65, 304, 390
HpyF10VI GCNNNNNNNGC 1 cut(s) 412
HpyF3I CTNAG 2 cut(s) 15, 78
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 3 cut(s) 238, 259, 301
Kzo9I GATC 2 cut(s) 150, 160
LpnPI CCDG 8 cut(s) 24, 31, 58, 107, 332, 370, 383, 401
Lsp1109I GCAGC 2 cut(s) 231, 288
LweI GCATC 3 cut(s) 30, 313, 345
MaeII ACGT 1 cut(s) 33
MalI GATC 2 cut(s) 152, 162
MboI GATC 2 cut(s) 150, 160
MboII GAAGA 3 cut(s) 118, 151, 170
MflI RGATCY 1 cut(s) 160
MluCI AATT 1 cut(s) 246
MlyI GAGTC 1 cut(s) 136
MmeI TCCRAC 1 cut(s) 112
MnlI CCTC 2 cut(s) 105, 359
MseI TTAA 3 cut(s) 111, 453, 469
MspI CCGG 1 cut(s) 370
MspR9I CCNGG 2 cut(s) 46, 371
MvaI CCWGG 1 cut(s) 46
MvnI CGCG 1 cut(s) 274
MwoI GCNNNNNNNGC 1 cut(s) 412
NciI CCSGG 1 cut(s) 371
NdeII GATC 2 cut(s) 150, 160
NlaIII CATG 3 cut(s) 238, 259, 301
PcsI WCGNNNNNNNCGW 1 cut(s) 30
PfoI TCCNGGA 1 cut(s) 369
PkrI GCNGC 3 cut(s) 221, 273, 303
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
Psp6I CCWGG 1 cut(s) 44
PspGI CCWGG 1 cut(s) 44
PsuI RGATCY 1 cut(s) 160
SaqAI TTAA 3 cut(s) 111, 453, 469
SatI GCNGC 3 cut(s) 220, 272, 302
Sau3AI GATC 2 cut(s) 150, 160
SchI GAGTC 1 cut(s) 136
ScrFI CCNGG 2 cut(s) 46, 371
SetI ASST 4 cut(s) 36, 97, 351, 389
SfaNI GCATC 3 cut(s) 30, 313, 345
Sse9I AATT 1 cut(s) 246
SsiI CCGC 1 cut(s) 272
StyD4I CCNGG 2 cut(s) 44, 369
TaiI ACGT 1 cut(s) 36
TaqI TCGA 1 cut(s) 351
TasI AATT 1 cut(s) 246
TauI GCSGC 1 cut(s) 274
Tru1I TTAA 3 cut(s) 111, 453, 469
Tru9I TTAA 3 cut(s) 111, 453, 469
TseI GCWGC 2 cut(s) 219, 301
TspDTI ATGAA 1 cut(s) 239
TspGWI ACGGA 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.