Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0002049

Physical Location & Seq

Genomic Coordinates Forward (+)

24939265 .. 24939830

Gene Structure 566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g21930.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGAGGTTGCGTCAATTGAGGAAATGTACGAGAAATGACAGAATACGTATCCGGATGATTCTAAGCATCCTGTGGAGAAATATTGTTAATACGTCCATGGGCTTATTGTCGTCCCCCACGACCTCTACTAGCTTGATTATTTCGCCCCTGCACAGCATGGCTCTGACTTGGCTGACCAGGTTGCCTCGAAGATCGATCTACACTACTGGAAGCAATCTCTACTTGATGGGGTTGTCCTCCCTAGTACCACTGAGATCCACTAGCTGGAATGGGAGGATACGTACGGATCCTGGGAATACTGATACTACCCTGAAGCATAAGGAGCGGTGTCACCCTAATAATGGTAAGCACCACCACGACTCATCTGTTTATAACTACCAAACCCTGGAACTTGTTGGATTGGCACTAGTGGTGGCAAAGAAGGCTGATGGGGCCTCTGCTCATTCTGGGGACAATTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000248 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016717 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0070704 GO:0071704 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 ko01130 map00100 map01100 map01110 map01130

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

154

Amino Acids

17.22

Weight (kDa)

10.91

Isoelectric Point (pI)

41.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002049)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g00950 pycom01g02230 pycom01g02530 pycom01g03240 pycom01g03780 pycom01g03960 pycom01g10590 pycom02g05860 pycom02g18140 pycom02g18750 pycom02g25820 pycom03g06900 pycom03g14140 pycom04g13490 pycom05g06800 pycom05g08060 pycom05g11020 pycom06g01480 pycom07g11130 pycom08g10990 pycom08g12630 pycom08g15990 pycom09g16180 pycom10g06310 pycom11g05150 pycom11g21930 pycom12g00360 pycom12g03890 pycom12g08360 pycom13g22190 pycom13g23920 pycom13g25930 pycom13g26530 pycom13g27310 pycom13g27750 pycom13g28850 pycom15g23410 pycom15g30270 pycom15g35580 pycom16g01960 pycom17g21240 pycom420g00260 pycom808g00230
rosa_chinensis	RchiOBHm_Chr2g0089581
rosa_roxburghii	Rroxscaffold_5G00351150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	372
AccB7I	CCANNNNNTGG	2 cut(s)	264, 385
AccBSI	CCGCTC	1 cut(s)	325
AccIII	TCCGGA	1 cut(s)	51
AciI	CCGC	1 cut(s)	325
AclWI	GGATC	3 cut(s)	249, 281, 294
AcuI	CTGAAG	1 cut(s)	332
AfaI	GTAC	3 cut(s)	28, 246, 283
AfiI	CCNNNNNNNGG	3 cut(s)	264, 341, 385
AhlI	ACTAGT	1 cut(s)	406
AjnI	CCWGG	3 cut(s)	176, 289, 384
AluBI	AGCT	2 cut(s)	132, 264
AluI	AGCT	2 cut(s)	132, 264
AlwI	GGATC	3 cut(s)	249, 281, 294
Aor13HI	TCCGGA	1 cut(s)	51
AoxI	GGCC	1 cut(s)	432
AspS9I	GGNCC	1 cut(s)	432
AsuHPI	GGTGA	1 cut(s)	323
BamHI	GGATCC	1 cut(s)	286
BccI	CCATC	2 cut(s)	220, 422
BciT130I	CCWGG	3 cut(s)	178, 291, 386
BciVI	GTATCC	2 cut(s)	59, 270
BcuI	ACTAGT	1 cut(s)	406
BfaI	CTAG	4 cut(s)	129, 242, 261, 407
BfuI	GTATCC	2 cut(s)	59, 270
Bme1390I	CCNGG	3 cut(s)	178, 291, 386
BmgT120I	GGNCC	1 cut(s)	432
BmiI	GGNNCC	2 cut(s)	288, 433
BmrFI	CCNGG	3 cut(s)	178, 291, 386
BmsI	GCATC	1 cut(s)	75
Bsa29I	ATCGAT	1 cut(s)	194
BsaAI	YACGTR	2 cut(s)	47, 281
BsaJI	CCNNGG	3 cut(s)	96, 290, 384
BsaWI	WCCGGW	1 cut(s)	51
BsaXI	ACNNNNNCTCC	2 cut(s)	265, 295
Bsc4I	CCNNNNNNNGG	3 cut(s)	264, 341, 385
Bse1I	ACTGG	1 cut(s)	211
BseAI	TCCGGA	1 cut(s)	51
BseBI	CCWGG	3 cut(s)	178, 291, 386
BseCI	ATCGAT	1 cut(s)	194
BseDI	CCNNGG	3 cut(s)	96, 290, 384
BseGI	GGATG	2 cut(s)	60, 66
BseLI	CCNNNNNNNGG	3 cut(s)	264, 341, 385
BseMII	CTCAG	1 cut(s)	242
BseNI	ACTGG	1 cut(s)	211
BsgI	GTGCAG	1 cut(s)	134
BshFI	GGCC	1 cut(s)	434
BshVI	ATCGAT	1 cut(s)	194
BsiSI	CCGG	1 cut(s)	52
BsiWI	CGTACG	1 cut(s)	281
BslFI	GGGAC	1 cut(s)	97
BslI	CCNNNNNNNGG	3 cut(s)	264, 341, 385
BsmFI	GGGAC	1 cut(s)	97
BsnI	GGCC	1 cut(s)	434
Bsp13I	TCCGGA	1 cut(s)	51
Bsp143I	GATC	4 cut(s)	191, 195, 254, 286
Bsp19I	CCATGG	1 cut(s)	96
BspACI	CCGC	1 cut(s)	325
BspANI	GGCC	1 cut(s)	434
BspCNI	CTCAG	1 cut(s)	243
BspDI	ATCGAT	1 cut(s)	194
BspEI	TCCGGA	1 cut(s)	51
BspLI	GGNNCC	2 cut(s)	288, 433
BspPI	GGATC	3 cut(s)	249, 281, 294
BsrBI	CCGCTC	1 cut(s)	325
BsrI	ACTGG	1 cut(s)	211
BssECI	CCNNGG	3 cut(s)	96, 290, 384
BssMI	GATC	4 cut(s)	191, 195, 254, 286
BssT1I	CCWWGG	1 cut(s)	96
Bst2UI	CCWGG	3 cut(s)	178, 291, 386
BstBAI	YACGTR	2 cut(s)	47, 281
BstDEI	CTNAG	2 cut(s)	62, 251
BstDSI	CCRYGG	1 cut(s)	96
BstF5I	GGATG	2 cut(s)	60, 66
BstKTI	GATC	4 cut(s)	194, 198, 257, 289
BstMBI	GATC	4 cut(s)	191, 195, 254, 286
BstMWI	GCNNNNNNNGC	3 cut(s)	322, 422, 431
BstNI	CCWGG	3 cut(s)	178, 291, 386
BstSCI	CCNGG	3 cut(s)	176, 289, 384
BstSNI	TACGTA	2 cut(s)	47, 281
BstX2I	RGATCY	2 cut(s)	254, 286
BstYI	RGATCY	2 cut(s)	254, 286
Bsu15I	ATCGAT	1 cut(s)	194
BsuI	GTATCC	2 cut(s)	59, 270
BsuRI	GGCC	1 cut(s)	434
BsuTUI	ATCGAT	1 cut(s)	194
BtgI	CCRYGG	1 cut(s)	96
BtsCI	GGATG	2 cut(s)	60, 66
BtsIMutI	CAGTG	1 cut(s)	248
Cfr13I	GGNCC	1 cut(s)	432
ClaI	ATCGAT	1 cut(s)	194
CsiI	ACCWGGT	1 cut(s)	176
Csp6I	GTAC	3 cut(s)	27, 245, 282
CviAII	CATG	2 cut(s)	97, 157
CviJI	RGCY	7 cut(s)	102, 132, 161, 172, 264, 425, 434
CviKI_1	RGCY	7 cut(s)	102, 132, 161, 172, 264, 425, 434
CviQI	GTAC	3 cut(s)	27, 245, 282
DdeI	CTNAG	2 cut(s)	62, 251
DpnI	GATC	4 cut(s)	193, 197, 256, 288
DpnII	GATC	4 cut(s)	191, 195, 254, 286
Eco105I	TACGTA	2 cut(s)	47, 281
Eco130I	CCWWGG	1 cut(s)	96
Eco57I	CTGAAG	1 cut(s)	332
EcoO109I	RGGNCCY	1 cut(s)	432
EcoRII	CCWGG	3 cut(s)	176, 289, 384
EcoT14I	CCWWGG	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	96
FaeI	CATG	2 cut(s)	100, 160
FaiI	YATR	5 cut(s)	98, 158, 318, 372, 460
FaqI	GGGAC	1 cut(s)	97
FatI	CATG	2 cut(s)	96, 156
FokI	GGATG	2 cut(s)	53, 67
FspBI	CTAG	4 cut(s)	129, 242, 261, 407
HaeIII	GGCC	1 cut(s)	434
HapII	CCGG	1 cut(s)	52
Hin1II	CATG	2 cut(s)	100, 160
HinfI	GANTC	2 cut(s)	58, 359
HpaII	CCGG	1 cut(s)	52
HphI	GGTGA	1 cut(s)	323
Hpy188I	TCNGA	1 cut(s)	165
Hpy188III	TCNNGA	1 cut(s)	52
HpyAV	CCTTC	1 cut(s)	415
HpyCH4IV	ACGT	3 cut(s)	46, 92, 280
HpyCH4V	TGCA	1 cut(s)	151
HpyF10VI	GCNNNNNNNGC	3 cut(s)	322, 422, 431
HpyF3I	CTNAG	2 cut(s)	62, 251
HpySE526I	ACGT	3 cut(s)	46, 92, 280
Hsp92II	CATG	2 cut(s)	100, 160
Kpn2I	TCCGGA	1 cut(s)	51
Kzo9I	GATC	4 cut(s)	191, 195, 254, 286
LmnI	GCTCC	1 cut(s)	322
LweI	GCATC	1 cut(s)	75
MabI	ACCWGGT	1 cut(s)	176
MaeI	CTAG	4 cut(s)	129, 242, 261, 407
MaeII	ACGT	3 cut(s)	46, 92, 280
MaeIII	GTNAC	1 cut(s)	329
MalI	GATC	4 cut(s)	193, 197, 256, 288
MbiI	CCGCTC	1 cut(s)	325
MboI	GATC	4 cut(s)	191, 195, 254, 286
MboII	GAAGA	1 cut(s)	201
MfeI	CAATTG	1 cut(s)	14
MflI	RGATCY	2 cut(s)	254, 286
MluCI	AATT	2 cut(s)	14, 454
MlyI	GAGTC	1 cut(s)	353
MmeI	TCCRAC	1 cut(s)	376
MnlI	CCTC	6 cut(s)	12, 133, 195, 247, 267, 445
MroI	TCCGGA	1 cut(s)	51
MseI	TTAA	1 cut(s)	87
MspI	CCGG	1 cut(s)	52
MspR9I	CCNGG	3 cut(s)	178, 291, 386
MunI	CAATTG	1 cut(s)	14
MvaI	CCWGG	3 cut(s)	178, 291, 386
MwoI	GCNNNNNNNGC	3 cut(s)	322, 422, 431
NcoI	CCATGG	1 cut(s)	96
NdeII	GATC	4 cut(s)	191, 195, 254, 286
NlaIII	CATG	2 cut(s)	100, 160
NlaIV	GGNNCC	2 cut(s)	288, 433
NmuCI	GTSAC	1 cut(s)	329
PcsI	WCGNNNNNNNCGW	1 cut(s)	116
PfeI	GAWTC	1 cut(s)	58
Pfl23II	CGTACG	1 cut(s)	281
PflMI	CCANNNNNTGG	2 cut(s)	264, 385
PleI	GAGTC	1 cut(s)	353
PpsI	GAGTC	1 cut(s)	353
Ppu21I	YACGTR	2 cut(s)	47, 281
PsiI	TTATAA	1 cut(s)	372
Psp6I	CCWGG	3 cut(s)	176, 289, 384
PspGI	CCWGG	3 cut(s)	176, 289, 384
PspLI	CGTACG	1 cut(s)	281
PspN4I	GGNNCC	2 cut(s)	288, 433
PspPI	GGNCC	1 cut(s)	432
PsuI	RGATCY	2 cut(s)	254, 286
RsaI	GTAC	3 cut(s)	28, 246, 283
RsaNI	GTAC	3 cut(s)	27, 245, 282
SaqAI	TTAA	1 cut(s)	87
Sau3AI	GATC	4 cut(s)	191, 195, 254, 286
Sau96I	GGNCC	1 cut(s)	432
SchI	GAGTC	1 cut(s)	353
ScrFI	CCNGG	3 cut(s)	178, 291, 386
SetI	ASST	8 cut(s)	8, 49, 95, 125, 134, 182, 266, 283
SexAI	ACCWGGT	1 cut(s)	176
SfaNI	GCATC	1 cut(s)	75
SnaBI	TACGTA	2 cut(s)	47, 281
SpeI	ACTAGT	1 cut(s)	406
Sse9I	AATT	2 cut(s)	14, 454
SsiI	CCGC	1 cut(s)	325
SspI	AATATT	1 cut(s)	82
SspMI	CTAG	4 cut(s)	129, 242, 261, 407
StyD4I	CCNGG	3 cut(s)	176, 289, 384
StyI	CCWWGG	1 cut(s)	96
TaiI	ACGT	3 cut(s)	49, 95, 283
TaqI	TCGA	2 cut(s)	187, 194
TasI	AATT	2 cut(s)	14, 454
TfiI	GAWTC	1 cut(s)	58
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TscAI	CASTG	1 cut(s)	255
TseFI	GTSAC	1 cut(s)	329
Tsp45I	GTSAC	1 cut(s)	329
TspGWI	ACGGA	1 cut(s)	299
TspRI	CASTG	1 cut(s)	255
Van91I	CCANNNNNTGG	2 cut(s)	264, 385
XspI	CTAG	4 cut(s)	129, 242, 261, 407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.